Experiment set39IT049 for Pseudomonas putida KT2440

Compare to:

2-Methylbutanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.0 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4724 -6.9 -12.0 Carbamoyl-phosphate synthase small chain compare
PP_4723 -6.3 -30.0 Carbamoyl-phosphate synthase large chain compare
PP_2335 -6.2 -8.4 methylcitrate synthase compare
PP_0967 -5.9 -5.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -5.9 -12.6 Glutamate 5-kinase compare
PP_0965 -5.9 -7.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -5.8 -4.0 Ornithine carbamoyltransferase compare
PP_1985 -5.8 -4.0 3-isopropylmalate dehydratase large subunit compare
PP_1988 -5.7 -3.9 3-isopropylmalate dehydrogenase compare
PP_2216 -5.6 -10.8 short-chain acyl-CoA dehydrogenase compare
PP_1995 -5.5 -6.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0422 -5.5 -5.3 Indole-3-glycerol phosphate synthase compare
PP_3511 -5.5 -7.5 Branched-chain-amino-acid aminotransferase compare
PP_1088 -5.5 -9.8 Argininosuccinate synthase compare
PP_5015 -5.4 -5.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -5.4 -7.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1231 -5.3 -3.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -5.2 -3.6 methionine biosynthesis protein MetW compare
PP_2215 -5.2 -3.6 acetyl-CoA acetyltransferase compare
PP_3821 -5.2 -16.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4909 -5.2 -7.1 phosphoserine phosphatase compare
PP_2217 -5.2 -3.2 enoyl-CoA hydratase compare
PP_0966 -5.1 -9.3 Histidinol dehydrogenase compare
PP_2211 -5.1 -7.0 Transcriptional regulator, AraC family compare
PP_4890 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4678 -5.1 -9.2 Ketol-acid reductoisomerase compare
PP_4680 -5.1 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -5.1 -9.1 O-succinylhomoserine sulfhydrylase compare
PP_0420 -5.0 -9.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -4.9 -15.2 Anthranilate synthase component 1 compare
PP_4700 -4.9 -3.4 pantothenate synthetase compare
PP_2334 -4.8 -3.3 2-methylisocitrate lyase compare
PP_2213 -4.8 -7.4 putative acyl-CoA synthetase compare
PP_5097 -4.8 -11.7 homoserine O-acetyltransferase compare
PP_0787 -4.8 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5289 -4.7 -3.3 Acetylglutamate kinase compare
PP_5185 -4.7 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1025 -4.7 -12.9 2-isopropylmalate synthase compare
PP_3756 -4.6 -6.3 TetR family transcriptional regulator compare
PP_0290 -4.6 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4364 -4.6 -4.5 putative Anti-sigma F factor antagonist compare
PP_4999 -4.5 -3.6 dihydroorotase-like protein compare
PP_1986 -4.4 -3.0 3-isopropylmalate dehydratase small subunit compare
PP_5090 -4.3 -2.3 putative cell division protein compare
PP_4116 -4.2 -15.3 isocitrate lyase compare
PP_5104 -4.1 -9.6 thiazole synthase compare
PP_0289 -4.1 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -4.1 -2.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2168 -4.1 -12.4 Transaldolase compare
PP_4679 -4.0 -4.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -4.0 -2.7 Nitrogen regulation protein NR(I) compare
PP_3999 -3.9 -3.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -3.9 -2.7 Argininosuccinate lyase compare
PP_4699 -3.9 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4058 -3.9 -12.3 1,4-alpha-glucan branching enzyme compare
PP_3754 -3.7 -4.2 Beta-ketothiolase BktB compare
PP_0292 -3.7 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0421 -3.6 -6.6 Anthranilate phosphoribosyltransferase compare
PP_5168 -3.6 -2.3 sulfate/thiosulfate import ATP-binding protein compare
PP_0082 -3.6 -2.5 tryptophan synthase alpha chain compare
PP_0083 -3.5 -2.4 tryptophan synthase beta chain compare
PP_5128 -3.5 -6.0 Dihydroxy-acid dehydratase compare
PP_5095 -3.5 -8.4 pyrroline-5-carboxylate reductase compare
PP_4782 -3.5 -6.9 Phosphomethylpyrimidine kinase compare
PP_4940 -3.5 -7.0 Putative glycosyltransferase compare
PP_2214 -3.3 -3.2 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_t29 -3.2 -2.0 tRNA-Ala compare
PP_2354 -3.2 -13.9 Sensory box histidine kinase/response regulator compare
PP_0164 -3.1 -9.3 conserved protein of unknown function compare
PP_0735 -3.1 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_5303 -3.1 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2356 -3.1 -12.6 putative Phytochrome family protein compare
PP_1233 -3.0 -8.4 sulfurtransferase compare
PP_1800 -3.0 -13.7 Oxidoreductase Rmd compare
PP_1778 -3.0 -8.8 Lipopolysaccharide ABC export system, permease protein compare
PP_0593 -2.9 -0.9 putative ribosome-binding factor compare
PP_1804 -2.9 -14.2 Glycosyl transferase WbpL compare
PP_0291 -2.9 -3.1 conserved protein of unknown function compare
PP_5155 -2.9 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4922 -2.9 -11.8 Phosphomethylpyrimidine synthase compare
PP_1801 -2.8 -15.0 Glycosyl transferase WbpY compare
PP_1799 -2.8 -16.3 GDP-mannose 4,6-dehydratase compare
PP_5014 -2.7 -3.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_1802 -2.7 -18.0 glycosyl transferase compare
PP_4762 -2.7 -7.7 Acyl-CoA thioesterase II compare
PP_1805 -2.6 -18.3 Polysaccharide biosynthesis protein compare
PP_3755 -2.6 -6.3 3-hydroxybutyryl-CoA dehydrogenase compare
PP_2337 -2.6 -1.8 aconitate isomerase compare
PP_2333 -2.6 -4.3 GntR family transcriptional regulator compare
PP_4938 -2.6 -13.0 putative Glycosyl transferase compare
PP_3365 -2.5 -1.1 Acetolactate synthase compare
PP_4628 -2.5 -3.6 conserved protein of unknown function compare
PP_1776 -2.5 -16.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5659 -2.5 -3.3 protein of unknown function compare
PP_0368 -2.5 -9.6 putative Acyl-CoA dehydrogenase compare
PP_0794 -2.3 -4.1 1-phosphofructokinase monomer compare
PP_2000 -2.3 -2.2 amidophosphoribosyl transferase compare
PP_4481 -2.3 -7.8 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3753 -2.3 -6.3 Transcriptional regulator, AraC family compare
PP_1780 -2.3 -17.1 putative mannosyltransferase compare
PP_1664 -2.2 -4.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_5227 -2.2 -8.8 diaminopimelate decarboxylase compare
PP_4993 -2.2 -3.0 Glutathione synthetase compare
PP_2370 -2.2 -2.5 conserved protein of unknown function compare
PP_3946 -2.2 -1.3 HTH-type transcriptional repressor NicR compare
PP_1803 -2.1 -12.5 UDP-sugar epimerase compare
PP_3590 -2.1 -5.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0365 -2.1 -8.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2328 -2.1 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_3411 -2.1 -1.8 conserved protein of unknown function compare
PP_0356 -2.0 -6.9 malate synthase G compare
PP_4984 -1.9 -9.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0364 -1.9 -8.5 pimeloyl-[acp] methyl ester esterase compare
PP_0366 -1.9 -7.3 dethiobiotin synthetase compare
PP_0339 -1.9 -6.9 Pyruvate dehydrogenase E1 component compare
PP_0362 -1.9 -8.4 Biotin synthase compare
PP_4500 -1.9 -3.5 TrpH family protein compare
PP_1589 -1.8 -8.3 uridylyltransferase compare
PP_1303 -1.8 -8.6 Sulfate adenylyltransferase subunit 2 compare
PP_1826 -1.8 -2.6 Hydrolase, isochorismatase family compare
PP_4902 -1.8 -2.1 Oligoribonuclease compare
PP_4936 -1.8 -7.0 O-antigen polymerase compare
PP_4695 -1.8 -7.2 Sensory box histidine kinase compare
PP_4778 -1.8 -3.3 23S rRNA pseudouridine 2457 synthase compare
PP_2029 -1.8 -2.0 von Willebrand factor type A domain protein compare
PP_2336 -1.8 -1.2 aconitate hydratase 1 compare
PP_1269 -1.7 -0.8 Universal stress protein family compare
PP_2402 -1.7 -1.6 putative Sensor histidine kinase compare
PP_4895 -1.7 -2.3 tRNA dimethylallyltransferase compare
PP_1764 -1.7 -8.8 Phosphoglycolate phosphatase 2 compare
PP_0406 -1.7 -6.3 Nucleotidyltransferase family protein compare
PP_2084 -1.7 -9.4 Putative regulator of ribonuclease activity compare
PP_2365 -1.7 -3.2 Transcriptional regulator, AraC family compare
PP_2499 -1.7 -1.0 conserved protein of unknown function compare
PP_3359 -1.7 -1.8 putative Hydroxycinnamic acid degradation regulator compare
PP_0363 -1.7 -9.3 8-amino-7-oxononanoate synthase compare
PP_2136 -1.6 -3.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4517 -1.6 -1.7 conserved protein of unknown function compare
PP_5346 -1.6 -8.0 pyruvate carboxylase subunit B compare
PP_2655 -1.6 -1.8 conserved protein of unknown function compare
PP_1654 -1.6 -1.9 cysteine synthase B compare
PP_3833 -1.6 -4.5 Response regulator compare
PP_5329 -1.6 -7.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2631 -1.6 -2.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1779 -1.6 -3.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2044 -1.6 -1.2 conserved inner membrane protein of unknown function compare
PP_5348 -1.5 -7.8 Transcriptional regulator, LysR family compare
PP_3662 -1.5 -6.1 conserved protein of unknown function compare
PP_5717 -1.5 -3.1 conserved protein of unknown function compare
PP_2899 -1.5 -0.9 conserved exported protein of unknown function compare
PP_2145 -1.5 -6.5 beta-N-acetylglucosaminidase compare
PP_1355 -1.5 -13.1 Muropeptide permease AmpG compare
PP_0152 -1.5 -1.5 conserved exported protein of unknown function compare
PP_3286 -1.5 -4.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0833 -1.5 -2.5 queuine tRNA-ribosyltransferase compare
PP_4943 -1.5 -0.9 putative Glycosyl transferase compare
PP_0434 -1.5 -8.8 Anhydro-N-acetylmuramic acid kinase compare
PP_4910 -1.4 -1.0 conserved protein of unknown function compare
PP_5328 -1.4 -6.6 putative phosphate transport system permease protein compare
PP_5350 -1.4 -4.0 Transcriptional regulator, RpiR family compare
PP_0405 -1.4 -11.9 conserved protein of unknown function compare
PP_5347 -1.4 -7.9 pyruvate carboxylase subunit A compare
PP_2439 -1.4 -1.0 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4874 -1.4 -0.9 50S ribosomal protein L9 compare
PP_1426 -1.4 -7.8 L-aspartate oxidase compare
PP_5054 -1.4 -1.4 glutaredoxin 3 compare
PP_2324 -1.4 -5.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2322 -1.4 -8.2 Major outer membrane lipoprotein compare
PP_0775 -1.3 -0.8 conserved protein of unknown function compare
PP_3880 -1.3 -1.0 conserved exported protein of unknown function compare
PP_3790 -1.3 -6.8 diaminopimelate epimerase compare
PP_1304 -1.3 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5035 -1.3 -4.6 Histidine utilization repressor compare
PP_0261 -1.3 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1692 -1.3 -1.4 conserved protein of unknown function compare
PP_4942 -1.3 -1.7 conserved protein of unknown function compare
PP_5327 -1.3 -7.1 putative phosphate ABC transporter, permease subunit compare
PP_3603 -1.3 -5.6 Transcriptional regulator, GntR family compare
PP_0319 -1.3 -1.6 conserved protein of unknown function compare
PP_1328 -1.3 -1.4 Protein MraZ compare
PP_1198 -1.3 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5582 -1.3 -0.8 conserved protein of unknown function compare
PP_4939 -1.2 -3.4 conserved protein of unknown function compare
PP_0260 -1.2 -5.7 ADP-sugar pyrophosphorylase compare
PP_5198 -1.2 -2.9 conserved protein of unknown function compare
PP_1217 -1.2 -1.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1655 -1.2 -2.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2137 -1.2 -2.7 beta-ketoadipyl CoA thiolase, beta component compare
PP_2442 -1.2 -1.3 conserved protein of unknown function, DUF480 family compare
PP_0122 -1.2 -2.3 conserved exported protein of unknown function compare
PP_1742 -1.2 -2.4 conserved inner membrane protein of unknown function compare
PP_3052 -1.2 -2.0 conserved protein of unknown function compare
PP_1054 -1.2 -1.3 Type II secretion pathway protein XcpZ compare
PP_0232 -1.1 -0.6 ATP-binding taurine transporter subunit compare
PP_5313 -1.1 -1.3 DNA-binding protein HU-alpha compare
PP_4847 -1.1 -1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_3378 -1.1 -0.9 putative 2-ketogluconokinase compare
PP_1410 -1.1 -1.0 conserved protein of unknown function compare
PP_0888 -1.1 -1.3 Photosynthetic apparatus regulatory protein RegA compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source 2-Methylbutanoic acid in Pseudomonas putida KT2440

For carbon source 2-Methylbutanoic acid across organisms