Experiment set39IT045 for Pseudomonas putida KT2440

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DL-3-Hydroxybutyric acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -8.9 -24.2 Carbamoyl-phosphate synthase large chain compare
PP_4724 -7.8 -13.3 Carbamoyl-phosphate synthase small chain compare
PP_0691 -7.4 -10.7 Glutamate 5-kinase compare
PP_0293 -7.3 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.8 -4.7 dihydroorotase-like protein compare
PP_3123 -6.6 -4.6 acetoacetyl CoA-transferase (subunit B) compare
PP_0787 -6.3 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3511 -6.2 -6.1 Branched-chain-amino-acid aminotransferase compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_4116 -6.1 -7.3 isocitrate lyase compare
PP_1079 -6.0 -5.8 Ornithine carbamoyltransferase compare
PP_0967 -5.9 -9.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -5.9 -7.0 Argininosuccinate synthase compare
PP_0356 -5.9 -4.1 malate synthase G compare
PP_1988 -5.9 -5.7 3-isopropylmalate dehydrogenase compare
PP_4678 -5.8 -6.9 Ketol-acid reductoisomerase compare
PP_4364 -5.8 -5.6 putative Anti-sigma F factor antagonist compare
PP_2327 -5.8 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4909 -5.8 -5.6 phosphoserine phosphatase compare
PP_5097 -5.8 -8.8 homoserine O-acetyltransferase compare
PP_0417 -5.6 -13.2 Anthranilate synthase component 1 compare
PP_0966 -5.6 -8.6 Histidinol dehydrogenase compare
PP_5098 -5.6 -3.9 methionine biosynthesis protein MetW compare
PP_0422 -5.6 -6.7 Indole-3-glycerol phosphate synthase compare
PP_4890 -5.6 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4680 -5.6 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3121 -5.5 -3.8 transcriptional regulator, LysR family compare
PP_5095 -5.5 -8.3 pyrroline-5-carboxylate reductase compare
PP_5659 -5.5 -3.8 protein of unknown function compare
PP_2001 -5.4 -9.8 O-succinylhomoserine sulfhydrylase compare
PP_4700 -5.4 -3.7 pantothenate synthetase compare
PP_1231 -5.3 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -5.2 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5289 -5.1 -3.6 Acetylglutamate kinase compare
PP_5185 -5.1 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -5.1 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0290 -5.0 -4.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4679 -4.9 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3075 -4.9 -3.4 putative transcriptional regulator compare
PP_1986 -4.9 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_1233 -4.8 -9.3 sulfurtransferase compare
PP_4699 -4.5 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1826 -4.5 -3.1 Hydrolase, isochorismatase family compare
PP_3073 -4.5 -8.6 3-hydroxybutyrate dehydrogenase compare
PP_5128 -4.4 -8.5 Dihydroxy-acid dehydratase compare
PP_2371 -4.4 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0184 -4.4 -3.0 Argininosuccinate lyase compare
PP_3999 -4.4 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0420 -4.3 -13.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5104 -4.3 -12.1 thiazole synthase compare
PP_0421 -4.3 -7.7 Anthranilate phosphoribosyltransferase compare
PP_0289 -4.2 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_4696 -4.0 -4.8 Nitrogen regulation protein NR(I) compare
PP_0292 -4.0 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -4.0 -2.8 tryptophan synthase beta chain compare
PP_1110 -3.9 -6.5 serine acetyltransferase compare
PP_3122 -3.6 -4.9 acetoacetyl CoA-transferase (subunit A) compare
PP_4922 -3.6 -14.7 Phosphomethylpyrimidine synthase compare
PP_5014 -3.4 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1109 -3.3 -15.7 Transcriptional regulator, GntR family compare
PP_2000 -3.2 -2.2 amidophosphoribosyl transferase compare
PP_1215 -3.2 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_3378 -3.1 -1.5 putative 2-ketogluconokinase compare
PP_2168 -3.1 -11.5 Transaldolase compare
PP_3074 -3.1 -8.7 D-beta-hydroxybutyrate permease compare
PP_4782 -3.0 -7.3 Phosphomethylpyrimidine kinase compare
PP_5155 -3.0 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4695 -3.0 -9.2 Sensory box histidine kinase compare
PP_2883 -2.9 -1.4 conserved protein of unknown function compare
PP_2328 -2.7 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -2.7 -8.0 2-isopropylmalate synthase compare
PP_1111 -2.7 -8.5 putative Synthetase compare
PP_1428 -2.6 -4.0 Sigma factor AlgU negative regulatory protein compare
PP_3603 -2.5 -6.4 Transcriptional regulator, GntR family compare
PP_0368 -2.5 -12.3 putative Acyl-CoA dehydrogenase compare
PP_3105 -2.5 -2.0 conserved membrane protein of unknown function compare
PP_4122 -2.5 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1654 -2.5 -1.7 cysteine synthase B compare
PP_0057 -2.4 -14.0 major facilitator family transporter compare
PP_3790 -2.4 -10.0 diaminopimelate epimerase compare
PP_5054 -2.4 -2.3 glutaredoxin 3 compare
PP_4342 -2.4 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_5085 -2.3 -7.8 malic enzyme B compare
PP_0735 -2.3 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_1664 -2.3 -6.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_2433 -2.3 -1.9 conserved protein of unknown function compare
PP_5313 -2.2 -2.0 DNA-binding protein HU-alpha compare
PP_0291 -2.2 -2.6 conserved protein of unknown function compare
PP_5717 -2.2 -4.3 conserved protein of unknown function compare
PP_3484 -2.1 -4.2 Response regulator receiver protein compare
PP_4943 -2.1 -1.4 putative Glycosyl transferase compare
PP_5217 -2.0 -17.1 Polyphosphate kinase compare
PP_0250 -2.0 -1.8 heat shock protein Hsp15 involved in ribosome recycling compare
PP_3821 -2.0 -10.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4480 -2.0 -10.1 arginine N-succinyltransferase, subunit alpha compare
PP_2302 -2.0 -5.9 DNA-binding, ATP-dependent protease compare
PP_4874 -2.0 -1.3 50S ribosomal protein L9 compare
PP_1493 -1.9 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3487 -1.9 -1.8 conserved exported protein of unknown function compare
PP_2499 -1.9 -1.1 conserved protein of unknown function compare
PP_1655 -1.8 -2.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0848 -1.8 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1237 -1.8 -1.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1217 -1.8 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2136 -1.7 -4.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5227 -1.7 -8.0 diaminopimelate decarboxylase compare
PP_5393 -1.7 -1.1 putative metal-binding chaperone compare
PP_0056 -1.7 -7.1 choline dehydrogenase compare
PP_2402 -1.7 -1.9 putative Sensor histidine kinase compare
PP_4130 -1.6 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1198 -1.6 -2.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4008 -1.6 -6.5 ATP-dependent serine protease compare
PP_4895 -1.6 -2.8 tRNA dimethylallyltransferase compare
PP_4701 -1.6 -0.7 glucose-6-phosphate isomerase compare
PP_1656 -1.6 -3.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_2806 -1.6 -5.1 Transcriptional regulator, TetR family compare
PP_5230 -1.6 -2.1 Tyrosine recombinase XerC compare
PP_0362 -1.5 -7.8 Biotin synthase compare
PP_4131 -1.5 -3.1 NADH-quinone oxidoreductase subunit N compare
PP_4136 -1.5 -0.7 Transcriptional regulator, LuxR family compare
PP_2773 -1.5 -1.4 conserved protein of unknown function compare
PP_4517 -1.5 -1.4 conserved protein of unknown function compare
PP_5347 -1.5 -7.9 pyruvate carboxylase subunit A compare
PP_3392 -1.5 -1.2 conserved protein of unknown function compare
PP_5346 -1.5 -8.4 pyruvate carboxylase subunit B compare
PP_2345 -1.4 -2.2 conserved exported protein of unknown function compare
PP_2029 -1.4 -1.3 von Willebrand factor type A domain protein compare
PP_5706 -1.4 -3.1 Sec translocation complex - SecG subunit compare
PP_2370 -1.4 -1.6 conserved protein of unknown function compare
PP_4940 -1.4 -6.1 Putative glycosyltransferase compare
PP_3649 -1.4 -0.9 Transcriptional regulator, GntR family compare
PP_1348 -1.4 -5.2 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0401 -1.4 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_0055 -1.4 -5.1 transcriptional regulator compare
PP_4120 -1.4 -1.0 NADH-quinone oxidoreductase subunit B compare
PP_5621 -1.4 -1.5 protein of unknown function compare
PP_4058 -1.4 -8.8 1,4-alpha-glucan branching enzyme compare
PP_4936 -1.4 -5.3 O-antigen polymerase compare
PP_4693 -1.3 -1.6 RNA polymerase-binding transcription factor DksA compare
PP_1683 -1.3 -1.0 Transcriptional regulator, MarR family compare
PP_1468 -1.3 -2.1 Tyrosine recombinase XerD compare
PP_2084 -1.3 -5.6 Putative regulator of ribonuclease activity compare
PP_0063 -1.3 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5445 -1.3 -1.5 conserved protein of unknown function compare
PP_3866 -1.3 -2.2 conserved protein of unknown function compare
PP_4265 -1.3 -2.5 DNA-binding transcriptional dual regulator compare
PP_1466 -1.3 -2.0 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_4253 -1.3 -2.3 cytochrome c oxidase subunit, cbb3-type compare
PP_5035 -1.3 -4.4 Histidine utilization repressor compare
PP_4964 -1.3 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_1994 -1.2 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4804 -1.2 -3.3 RlpA-like lipoprotein compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_4124 -1.2 -1.4 NADH-quinone oxidoreductase subunit G compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3277 -1.2 -3.4 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_0880 -1.2 -2.1 dipeptide ABC transporter - putative membrane subunit compare
PP_0832 -1.2 -4.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3808 -1.2 -0.9 Antibiotic synthesis protein MbtH compare
PP_0905 -1.2 -0.9 conserved exported protein of unknown function compare
PP_4582 -1.2 -3.2 conserved membrane protein of unknown function compare
PP_0048 -1.2 -0.8 conserved protein of unknown function compare
PP_4254 -1.2 -1.1 conserved protein of unknown function compare
PP_2847 -1.2 -0.9 Urease accessory protein UreJ compare
PP_0122 -1.1 -2.4 conserved exported protein of unknown function compare
PP_1216 -1.1 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0393 -1.1 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4121 -1.1 -1.5 NADH-quinone oxidoreductase subunit C/D compare
PP_1304 -1.1 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1571 -1.1 -2.5 conserved protein of unknown function compare
PP_4126 -1.1 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_0164 -1.1 -5.3 conserved protein of unknown function compare
PP_1352 -1.1 -1.7 UPF0234 protein PP_1352 compare
PP_3076 -1.1 -6.1 putative ABC transporter permease protein compare
PP_5499 -1.1 -2.7 conserved protein of unknown function compare
PP_0694 -1.1 -4.1 conserved protein of unknown function compare
PP_1269 -1.1 -0.6 Universal stress protein family compare
PP_2820 -1.1 -2.2 HTH-type transcriptional regulator nfxB compare
PP_1673 -1.1 -4.2 cobyrinate a,c-diamide synthase compare
PP_0413 -1.1 -6.9 Polyamine ABC transporter, permease protein compare
PP_5348 -1.1 -5.1 Transcriptional regulator, LysR family compare
PP_1804 -1.1 -6.7 Glycosyl transferase WbpL compare
PP_0719 -1.1 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1293 -1.0 -0.7 molybdopterin synthase small subunit compare
PP_4227 -1.0 -1.4 conserved protein of unknown function compare
PP_0022 -1.0 -0.6 hypothetical protein compare
PP_2439 -1.0 -1.8 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4917 -1.0 -3.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4938 -1.0 -4.2 putative Glycosyl transferase compare
PP_4726 -1.0 -1.9 Chaperone protein DnaJ compare
PP_4268 -1.0 -0.9 nucleoid-associated broad specificity regulator compare
PP_2137 -1.0 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_0319 -1.0 -1.5 conserved protein of unknown function compare
PP_1303 -1.0 -4.0 Sulfate adenylyltransferase subunit 2 compare
PP_5303 -1.0 -3.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4504 -1.0 -1.0 conserved exported protein of unknown function compare
PP_0220 -1.0 -2.2 methionine import ATP-binding protein metN2 compare
PP_3902 -1.0 -1.8 conserved protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source DL-3-Hydroxybutyric acid sodium salt in Pseudomonas putida KT2440

For carbon source DL-3-Hydroxybutyric acid sodium salt across organisms