Experiment set39IT044 for Pseudomonas putida KT2440

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DL-3-Hydroxyisobutyric acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -9.1 -24.5 Carbamoyl-phosphate synthase large chain compare
PP_4724 -8.3 -12.3 Carbamoyl-phosphate synthase small chain compare
PP_0293 -7.5 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0055 -7.1 -4.9 transcriptional regulator compare
PP_4999 -6.9 -4.7 dihydroorotase-like protein compare
PP_5348 -6.8 -4.7 Transcriptional regulator, LysR family compare
PP_0691 -6.8 -13.7 Glutamate 5-kinase compare
PP_0967 -6.4 -6.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -6.4 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5015 -6.4 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2335 -6.4 -9.7 methylcitrate synthase compare
PP_0965 -6.4 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -6.3 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_0422 -6.3 -4.4 Indole-3-glycerol phosphate synthase compare
PP_1995 -6.3 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0057 -6.3 -15.2 major facilitator family transporter compare
PP_1985 -6.3 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.2 -4.3 3-isopropylmalate dehydrogenase compare
PP_1079 -6.1 -5.9 Ornithine carbamoyltransferase compare
PP_5095 -6.0 -7.5 pyrroline-5-carboxylate reductase compare
PP_2327 -6.0 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0966 -6.0 -8.2 Histidinol dehydrogenase compare
PP_5346 -5.9 -9.7 pyruvate carboxylase subunit B compare
PP_1088 -5.9 -10.7 Argininosuccinate synthase compare
PP_0417 -5.9 -11.4 Anthranilate synthase component 1 compare
PP_4909 -5.8 -5.7 phosphoserine phosphatase compare
PP_4678 -5.8 -8.0 Ketol-acid reductoisomerase compare
PP_5097 -5.7 -9.6 homoserine O-acetyltransferase compare
PP_0056 -5.7 -13.4 choline dehydrogenase compare
PP_0597 -5.7 -14.7 methylmalonate-semialdehyde dehydrogenase compare
PP_5347 -5.6 -3.9 pyruvate carboxylase subunit A compare
PP_5098 -5.5 -5.3 methionine biosynthesis protein MetW compare
PP_2334 -5.4 -3.7 2-methylisocitrate lyase compare
PP_4700 -5.4 -3.7 pantothenate synthetase compare
PP_1231 -5.4 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0290 -5.3 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2433 -5.2 -3.0 conserved protein of unknown function compare
PP_4680 -5.2 -9.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4679 -5.0 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -5.0 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -5.0 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_4667 -4.9 -11.9 methylmalonate-semialdehyde dehydrogenase compare
PP_4058 -4.9 -10.0 1,4-alpha-glucan branching enzyme compare
PP_4890 -4.8 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_2001 -4.8 -7.9 O-succinylhomoserine sulfhydrylase compare
PP_4666 -4.7 -8.3 3-hydroxyisobutyrate dehydrogenase compare
PP_3999 -4.7 -3.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0362 -4.6 -12.8 Biotin synthase compare
PP_4699 -4.6 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2371 -4.6 -4.4 Sulphite reductase hemoprotein, beta subunit compare
PP_1025 -4.6 -15.8 2-isopropylmalate synthase compare
PP_5128 -4.5 -8.8 Dihydroxy-acid dehydratase compare
PP_4696 -4.5 -3.1 Nitrogen regulation protein NR(I) compare
PP_0184 -4.5 -3.1 Argininosuccinate lyase compare
PP_0421 -4.4 -7.5 Anthranilate phosphoribosyltransferase compare
PP_2031 -4.4 -2.5 conserved protein of unknown function compare
PP_0595 -4.3 -10.4 Transcriptional regulator, LysR family compare
PP_5104 -4.3 -10.9 thiazole synthase compare
PP_0289 -4.2 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_5289 -4.1 -4.8 Acetylglutamate kinase compare
PP_0083 -4.1 -2.8 tryptophan synthase beta chain compare
PP_1426 -4.0 -15.6 L-aspartate oxidase compare
PP_0339 -3.9 -2.7 Pyruvate dehydrogenase E1 component compare
PP_4628 -3.8 -5.1 conserved protein of unknown function compare
PP_2328 -3.6 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_4364 -3.6 -4.1 putative Anti-sigma F factor antagonist compare
PP_1826 -3.5 -4.8 Hydrolase, isochorismatase family compare
PP_0596 -3.5 -10.3 Omega-amino acid--pyruvate aminotransferase compare
PP_5155 -3.4 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0735 -3.4 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_2000 -3.3 -2.2 amidophosphoribosyl transferase compare
PP_2337 -3.2 -2.2 aconitate isomerase compare
PP_1215 -3.2 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_0292 -3.2 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_3378 -3.2 -1.5 putative 2-ketogluconokinase compare
PP_4782 -3.1 -6.4 Phosphomethylpyrimidine kinase compare
PP_5217 -3.1 -23.5 Polyphosphate kinase compare
PP_2370 -3.1 -2.9 conserved protein of unknown function compare
PP_0366 -3.0 -9.4 dethiobiotin synthetase compare
PP_4720 -3.0 -2.3 putative RNA binding protein compare
PP_0356 -3.0 -7.8 malate synthase G compare
PP_4695 -3.0 -8.8 Sensory box histidine kinase compare
PP_4668 -2.9 -12.9 Transcriptional regulator, LysR family compare
PP_1233 -2.9 -7.8 sulfurtransferase compare
PP_5227 -2.9 -10.6 diaminopimelate decarboxylase compare
PP_1493 -2.9 -5.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0420 -2.8 -8.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5085 -2.8 -9.3 malic enzyme B compare
PP_0363 -2.7 -10.9 8-amino-7-oxononanoate synthase compare
PP_0364 -2.7 -10.8 pimeloyl-[acp] methyl ester esterase compare
PP_5014 -2.6 -2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4984 -2.6 -11.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2868 -2.5 -7.1 Transcriptional regulator, Cro/CI family compare
PP_2336 -2.4 -1.6 aconitate hydratase 1 compare
PP_5423 -2.4 -2.3 conserved membrane protein of unknown function compare
PP_5508 -2.3 -1.1 conserved protein of unknown function compare
PP_2168 -2.3 -9.4 Transaldolase compare
PP_1664 -2.2 -7.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1428 -2.2 -3.8 Sigma factor AlgU negative regulatory protein compare
PP_1654 -2.2 -3.0 cysteine synthase B compare
PP_4922 -2.2 -11.6 Phosphomethylpyrimidine synthase compare
PP_0365 -2.1 -8.2 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_3505 -2.1 -3.0 conserved protein of unknown function compare
PP_4902 -2.0 -3.1 Oligoribonuclease compare
PP_4895 -2.0 -3.1 tRNA dimethylallyltransferase compare
PP_4910 -2.0 -1.4 conserved protein of unknown function compare
PP_0087 -2.0 -2.0 conserved exported protein of unknown function compare
PP_3105 -1.9 -2.2 conserved membrane protein of unknown function compare
PP_2439 -1.9 -1.8 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_2132 -1.8 -4.7 Universal stress protein compare
PP_1217 -1.8 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3506 -1.8 -5.2 Magnesium chelatase, subunit ChII compare
PP_2442 -1.7 -1.2 conserved protein of unknown function, DUF480 family compare
PP_2217 -1.7 -3.8 enoyl-CoA hydratase compare
PP_4701 -1.7 -0.8 glucose-6-phosphate isomerase compare
PP_0001 -1.7 -1.1 probable chromosome-partitioning protein compare
PP_3946 -1.7 -1.2 HTH-type transcriptional repressor NicR compare
PP_0513 -1.7 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5717 -1.6 -2.4 conserved protein of unknown function compare
PP_0164 -1.6 -6.9 conserved protein of unknown function compare
PP_2414 -1.5 -1.9 conserved exported protein of unknown function compare
PP_4480 -1.5 -7.6 arginine N-succinyltransferase, subunit alpha compare
PP_4943 -1.5 -1.8 putative Glycosyl transferase compare
PP_0250 -1.5 -1.4 heat shock protein Hsp15 involved in ribosome recycling compare
PP_5203 -1.5 -6.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_3603 -1.5 -6.5 Transcriptional regulator, GntR family compare
PP_1468 -1.5 -2.7 Tyrosine recombinase XerD compare
PP_4131 -1.5 -3.3 NADH-quinone oxidoreductase subunit N compare
PP_1656 -1.5 -3.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_1568 -1.5 -1.0 conserved protein of unknown function compare
PP_5045 -1.5 -4.4 tRNA sulfurtransferase compare
PP_0291 -1.5 -1.5 conserved protein of unknown function compare
PP_1655 -1.5 -2.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1198 -1.4 -2.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5338 -1.4 -1.7 aspartate ammonia-lyase compare
PP_4122 -1.4 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4130 -1.4 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2474 -1.4 -2.7 Glutathione S-transferase family protein compare
PP_4546 -1.4 -3.6 ATP-dependent helicase HrpA compare
PP_0401 -1.4 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_5393 -1.3 -0.7 putative metal-binding chaperone compare
PP_1629 -1.3 -3.8 Protein RecA compare
PP_4120 -1.3 -1.3 NADH-quinone oxidoreductase subunit B compare
PP_0368 -1.3 -7.5 putative Acyl-CoA dehydrogenase compare
PP_2820 -1.3 -3.5 HTH-type transcriptional regulator nfxB compare
PP_2550 -1.3 -2.1 putative transcriptional regulatory protein compare
PP_2373 -1.3 -1.9 conserved protein of unknown function compare
PP_1269 -1.3 -0.7 Universal stress protein family compare
PP_5313 -1.3 -1.6 DNA-binding protein HU-alpha compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_3806 -1.2 -1.4 Hydrolase, isochorismatase family compare
PP_3649 -1.2 -1.1 Transcriptional regulator, GntR family compare
PP_4124 -1.2 -1.8 NADH-quinone oxidoreductase subunit G compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4121 -1.2 -1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_0856 -1.2 -3.1 conserved lipoprotein of unknown function compare
PP_4342 -1.2 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_5328 -1.2 -4.1 putative phosphate transport system permease protein compare
PP_0007 -1.1 -1.8 conserved hypothetical protein compare
PP_5659 -1.1 -2.6 protein of unknown function compare
PP_5572 -1.1 -2.7 protein of unknown function compare
PP_3637 -1.1 -2.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1111 -1.1 -5.2 putative Synthetase compare
PP_2402 -1.1 -1.7 putative Sensor histidine kinase compare
PP_2302 -1.1 -4.6 DNA-binding, ATP-dependent protease compare
PP_3239 -1.1 -1.3 putative cointegrate resolution protein T Tn4652 compare
PP_2908 -1.1 -3.5 DNA-binding transcriptional repressor compare
PP_1979 -1.1 -1.9 putative Hydrolase compare
PP_3491 -1.1 -5.1 Enoly-coenzyme A hydratase/isomerase family protein compare
PP_4116 -1.1 -6.9 isocitrate lyase compare
PP_4471 -1.1 -3.7 Magnesium transporter compare
PP_5146 -1.1 -5.9 RNA pyrophosphohydrolase compare
PP_5274 -1.1 -1.0 conserved protein of unknown function compare
PP_0377 -1.1 -1.3 coenzyme PQQ synthesis protein D compare
PP_1683 -1.1 -1.6 Transcriptional regulator, MarR family compare
PP_4500 -1.1 -3.0 TrpH family protein compare
PP_2030 -1.1 -3.4 conserved protein of unknown function compare
PP_5035 -1.0 -4.7 Histidine utilization repressor compare
PP_0852 -1.0 -2.0 Transcriptional regulator, Cro/CI family compare
PP_2333 -1.0 -1.9 GntR family transcriptional regulator compare
PP_1366 -1.0 -2.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1099 -1.0 -1.3 Cold shock protein CapB compare
PP_0888 -1.0 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4126 -1.0 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4952 -1.0 -0.9 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4227 -1.0 -1.4 conserved protein of unknown function compare
PP_4004 -1.0 -2.9 DNA translocase FtsK compare
PP_1679 -1.0 -2.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4532 -1.0 -3.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1734 -1.0 -0.7 Probable septum site-determining protein MinC compare
PP_4009 -1.0 -3.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_3904 -1.0 -1.3 conserved protein of unknown function compare
PP_0486 -1.0 -6.4 Transcriptional regulator, GntR family compare
PP_5507 -1.0 -1.6 protein of unknown function compare
PP_1216 -1.0 -0.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4913 -1.0 -2.2 conserved protein of unknown function compare
PP_2027 -0.9 -2.8 conserved exported protein of unknown function compare
PP_5487 -0.9 -1.8 conserved protein of unknown function compare
PP_5705 -0.9 -1.0 protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source DL-3-Hydroxyisobutyric acid sodium salt in Pseudomonas putida KT2440

For carbon source DL-3-Hydroxyisobutyric acid sodium salt across organisms