Experiment set39IT043 for Pseudomonas putida KT2440

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DL-3-Hydroxyisobutyric acid sodium salt carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -10.1 -29.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -7.9 -14.5 Carbamoyl-phosphate synthase small chain compare
PP_0293 -7.3 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5346 -6.8 -6.7 pyruvate carboxylase subunit B compare
PP_4999 -6.7 -4.6 dihydroorotase-like protein compare
PP_2335 -6.5 -7.7 methylcitrate synthase compare
PP_0691 -6.4 -12.1 Glutamate 5-kinase compare
PP_0055 -6.3 -8.7 transcriptional regulator compare
PP_5348 -6.3 -7.5 Transcriptional regulator, LysR family compare
PP_4364 -6.3 -4.3 putative Anti-sigma F factor antagonist compare
PP_0787 -6.2 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0967 -6.2 -7.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0057 -6.2 -13.2 major facilitator family transporter compare
PP_1079 -6.2 -4.3 Ornithine carbamoyltransferase compare
PP_0422 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.0 -4.2 3-isopropylmalate dehydrogenase compare
PP_0965 -5.9 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -5.9 -7.0 homoserine O-acetyltransferase compare
PP_2327 -5.8 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0966 -5.8 -8.8 Histidinol dehydrogenase compare
PP_1088 -5.7 -9.6 Argininosuccinate synthase compare
PP_4678 -5.7 -6.8 Ketol-acid reductoisomerase compare
PP_0417 -5.7 -11.0 Anthranilate synthase component 1 compare
PP_1231 -5.7 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -5.6 -3.9 methionine biosynthesis protein MetW compare
PP_5015 -5.6 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4680 -5.6 -5.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -5.5 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -5.5 -3.8 pyruvate carboxylase subunit A compare
PP_0056 -5.5 -14.1 choline dehydrogenase compare
PP_4909 -5.4 -6.5 phosphoserine phosphatase compare
PP_2001 -5.4 -9.7 O-succinylhomoserine sulfhydrylase compare
PP_0597 -5.3 -14.9 methylmalonate-semialdehyde dehydrogenase compare
PP_2334 -5.3 -3.6 2-methylisocitrate lyase compare
PP_3511 -5.2 -9.4 Branched-chain-amino-acid aminotransferase compare
PP_0290 -5.1 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -5.1 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2433 -5.1 -2.9 conserved protein of unknown function compare
PP_4667 -5.0 -10.1 methylmalonate-semialdehyde dehydrogenase compare
PP_4679 -4.9 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4700 -4.9 -4.7 pantothenate synthetase compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_1025 -4.8 -15.0 2-isopropylmalate synthase compare
PP_5095 -4.8 -8.5 pyrroline-5-carboxylate reductase compare
PP_4058 -4.8 -9.1 1,4-alpha-glucan branching enzyme compare
PP_5289 -4.6 -4.5 Acetylglutamate kinase compare
PP_0362 -4.6 -12.2 Biotin synthase compare
PP_1233 -4.6 -10.2 sulfurtransferase compare
PP_5128 -4.6 -8.7 Dihydroxy-acid dehydratase compare
PP_2371 -4.5 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.3 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -4.3 -3.0 Nitrogen regulation protein NR(I) compare
PP_0184 -4.3 -3.0 Argininosuccinate lyase compare
PP_0289 -4.3 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_4699 -4.2 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0421 -4.1 -6.3 Anthranilate phosphoribosyltransferase compare
PP_0292 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4666 -4.0 -8.4 3-hydroxyisobutyrate dehydrogenase compare
PP_0082 -4.0 -2.8 tryptophan synthase alpha chain compare
PP_0048 -4.0 -1.4 conserved protein of unknown function compare
PP_0595 -3.9 -9.8 Transcriptional regulator, LysR family compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_2328 -3.9 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_5104 -3.8 -10.1 thiazole synthase compare
PP_4628 -3.8 -5.7 conserved protein of unknown function compare
PP_0339 -3.8 -2.6 Pyruvate dehydrogenase E1 component compare
PP_1426 -3.7 -15.0 L-aspartate oxidase compare
PP_0596 -3.6 -12.6 Omega-amino acid--pyruvate aminotransferase compare
PP_5014 -3.4 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0735 -3.3 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0356 -3.3 -9.6 malate synthase G compare
PP_5155 -3.2 -3.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5217 -3.2 -22.9 Polyphosphate kinase compare
PP_4782 -3.1 -5.6 Phosphomethylpyrimidine kinase compare
PP_2000 -3.1 -2.2 amidophosphoribosyl transferase compare
PP_4695 -3.1 -10.1 Sensory box histidine kinase compare
PP_2337 -3.1 -2.1 aconitate isomerase compare
PP_4668 -3.1 -11.9 Transcriptional regulator, LysR family compare
PP_0366 -3.0 -9.0 dethiobiotin synthetase compare
PP_5085 -2.9 -8.1 malic enzyme B compare
PP_0420 -2.9 -8.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0365 -2.9 -11.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2168 -2.9 -12.4 Transaldolase compare
PP_0363 -2.8 -11.9 8-amino-7-oxononanoate synthase compare
PP_1683 -2.8 -2.1 Transcriptional regulator, MarR family compare
PP_2402 -2.8 -1.9 putative Sensor histidine kinase compare
PP_5227 -2.7 -9.8 diaminopimelate decarboxylase compare
PP_4984 -2.7 -9.8 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1293 -2.7 -1.3 molybdopterin synthase small subunit compare
PP_1186 -2.7 -4.0 two component system DNA-binding transcriptional dual regulator compare
PP_1493 -2.7 -4.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5659 -2.6 -3.8 protein of unknown function compare
PP_0164 -2.6 -10.8 conserved protein of unknown function compare
PP_0291 -2.6 -2.9 conserved protein of unknown function compare
PP_0630 -2.5 -1.2 DNA gyrase inhibitor YacG compare
PP_0364 -2.5 -10.5 pimeloyl-[acp] methyl ester esterase compare
PP_4922 -2.5 -12.1 Phosphomethylpyrimidine synthase compare
PP_1654 -2.4 -1.6 cysteine synthase B compare
PP_5717 -2.4 -4.2 conserved protein of unknown function compare
PP_2336 -2.3 -1.6 aconitate hydratase 1 compare
PP_5232 -2.3 -1.6 conserved protein of unknown function compare
PP_0833 -2.2 -3.3 queuine tRNA-ribosyltransferase compare
PP_2773 -2.1 -1.7 conserved protein of unknown function compare
PP_1826 -2.1 -3.5 Hydrolase, isochorismatase family compare
PP_5230 -2.1 -2.0 Tyrosine recombinase XerC compare
PP_0274 -2.0 -1.0 putative transcriptional regulator containing HTH domain compare
PP_1428 -2.0 -3.2 Sigma factor AlgU negative regulatory protein compare
PP_3874 -2.0 -2.4 conserved protein of unknown function compare
PP_4517 -2.0 -2.1 conserved protein of unknown function compare
PP_0232 -1.9 -0.9 ATP-binding taurine transporter subunit compare
PP_4726 -1.9 -2.6 Chaperone protein DnaJ compare
PP_2306 -1.9 -1.7 conserved exported protein of unknown function compare
PP_2883 -1.8 -1.2 conserved protein of unknown function compare
PP_2868 -1.8 -7.3 Transcriptional regulator, Cro/CI family compare
PP_1664 -1.8 -6.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_5054 -1.8 -2.0 glutaredoxin 3 compare
PP_2333 -1.8 -2.9 GntR family transcriptional regulator compare
PP_2087 -1.8 -2.4 CmpX protein compare
PP_2793 -1.8 -2.4 Acyl-CoA dehydrogenase family protein compare
PP_3603 -1.8 -6.9 Transcriptional regulator, GntR family compare
PP_2203 -1.7 -2.8 conserved protein of unknown function compare
PP_2029 -1.7 -2.1 von Willebrand factor type A domain protein compare
PP_1656 -1.7 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4480 -1.7 -8.9 arginine N-succinyltransferase, subunit alpha compare
PP_5203 -1.7 -6.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_1237 -1.7 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4895 -1.6 -3.0 tRNA dimethylallyltransferase compare
PP_0513 -1.6 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1994 -1.6 -2.1 tRNA pseudouridine (38-40)synthase compare
PP_4701 -1.6 -0.8 glucose-6-phosphate isomerase compare
PP_1055 -1.6 -0.7 Type II secretion pathway protein GspN compare
PP_1217 -1.6 -1.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5706 -1.5 -3.6 Sec translocation complex - SecG subunit compare
PP_2217 -1.5 -3.3 enoyl-CoA hydratase compare
PP_4122 -1.5 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1655 -1.5 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3821 -1.5 -8.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3409 -1.5 -2.5 putative Cobalamin biosynthesis protein cobE compare
PP_2442 -1.5 -1.6 conserved protein of unknown function, DUF480 family compare
PP_2414 -1.5 -1.8 conserved exported protein of unknown function compare
PP_4130 -1.5 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1041 -1.5 -1.2 twin arginine protein export complex subunit compare
PP_2302 -1.5 -4.6 DNA-binding, ATP-dependent protease compare
PP_3505 -1.5 -1.5 conserved protein of unknown function compare
PP_1216 -1.4 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1906 -1.4 -4.0 ribosomal large subunit pseudouridine synthase C compare
PP_2370 -1.4 -1.6 conserved protein of unknown function compare
PP_0856 -1.4 -3.2 conserved lipoprotein of unknown function compare
PP_2820 -1.4 -4.0 HTH-type transcriptional regulator nfxB compare
PP_3487 -1.3 -1.6 conserved exported protein of unknown function compare
PP_3359 -1.3 -1.8 putative Hydroxycinnamic acid degradation regulator compare
PP_5487 -1.3 -1.7 conserved protein of unknown function compare
PP_1322 -1.3 -1.0 putative Lipoprotein compare
PP_4116 -1.3 -7.9 isocitrate lyase compare
PP_3649 -1.3 -0.9 Transcriptional regulator, GntR family compare
PP_0368 -1.3 -6.8 putative Acyl-CoA dehydrogenase compare
PP_1038 -1.3 -1.2 conserved protein of unknown function compare
PP_2439 -1.3 -1.8 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4902 -1.3 -2.2 Oligoribonuclease compare
PP_0276 -1.3 -0.7 Transcriptional regulator, Cro/CI family compare
PP_3417 -1.2 -3.6 D-gluconate transporter compare
PP_4793 -1.2 -2.6 conserved protein of unknown function compare
PP_2677 -1.2 -1.5 conserved exported protein of unknown function compare
PP_4159 -1.2 -1.6 Potassium-transporting ATPase C chain compare
PP_3637 -1.2 -2.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_2132 -1.2 -2.9 Universal stress protein compare
PP_5359 -1.2 -1.2 CobW/P47K family protein compare
PP_3102 -1.1 -3.2 conserved protein of unknown function compare
PP_3647 -1.1 -1.9 putative Oxidoreductase compare
PP_2765 -1.1 -1.1 putative Sulfonate monooxygenase MsuD compare
PP_1999 -1.1 -1.6 membrane protein required for colicin V production compare
PP_5309 -1.1 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_5146 -1.1 -6.7 RNA pyrophosphohydrolase compare
PP_1351 -1.1 -4.4 putative 2-dehydropantoate 2-reductase compare
PP_1872 -1.1 -5.9 glutamate-pyruvate aminotransferase compare
PP_4131 -1.1 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_2348 -1.1 -2.5 Sensor histidine kinase compare
PP_1215 -1.1 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0250 -1.1 -1.0 heat shock protein Hsp15 involved in ribosome recycling compare
PP_1677 -1.1 -3.9 Adenosyl-cobyric acid synthase compare
PP_3506 -1.1 -2.7 Magnesium chelatase, subunit ChII compare
PP_4124 -1.1 -1.7 NADH-quinone oxidoreductase subunit G compare
PP_4120 -1.0 -1.6 NADH-quinone oxidoreductase subunit B compare
PP_5045 -1.0 -2.8 tRNA sulfurtransferase compare
PP_0666 -1.0 -1.8 conserved protein of unknown function compare
PP_0948 -1.0 -2.2 Phosphocarrier protein HPr compare
PP_5329 -1.0 -5.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4121 -1.0 -1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_5445 -1.0 -1.8 conserved protein of unknown function compare
PP_2928 -1.0 -4.6 Saccharopine dehydrogenase compare
PP_4693 -1.0 -1.7 RNA polymerase-binding transcription factor DksA compare
PP_4880 -1.0 -3.8 exoribonuclease R compare
PP_3539 -1.0 -2.5 putative Transcriptional regulator compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4004 -1.0 -2.9 DNA translocase FtsK compare
PP_2929 -1.0 -5.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_3904 -1.0 -2.2 conserved protein of unknown function compare
PP_4943 -1.0 -1.4 putative Glycosyl transferase compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source DL-3-Hydroxyisobutyric acid sodium salt in Pseudomonas putida KT2440

For carbon source DL-3-Hydroxyisobutyric acid sodium salt across organisms