Experiment set39IT042 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Sodium Chloride 200 mM

200 most important genes:

  gene name fitness t score description  
PP_4724 -7.7 -13.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.7 -24.8 Carbamoyl-phosphate synthase large chain compare
PP_4999 -6.7 -4.6 dihydroorotase-like protein compare
PP_3511 -6.3 -6.2 Branched-chain-amino-acid aminotransferase compare
PP_0787 -6.2 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0965 -6.2 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.0 -4.1 3-isopropylmalate dehydrogenase compare
PP_0967 -5.9 -7.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4678 -5.7 -5.6 Ketol-acid reductoisomerase compare
PP_0966 -5.7 -7.8 Histidinol dehydrogenase compare
PP_5346 -5.7 -11.0 pyruvate carboxylase subunit B compare
PP_1079 -5.7 -5.5 Ornithine carbamoyltransferase compare
PP_1995 -5.7 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -5.6 -9.4 Argininosuccinate synthase compare
PP_2327 -5.6 -7.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5098 -5.6 -3.8 methionine biosynthesis protein MetW compare
PP_0293 -5.5 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1231 -5.2 -5.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4700 -5.2 -3.6 pantothenate synthetase compare
PP_4909 -5.2 -8.0 phosphoserine phosphatase compare
PP_0417 -5.2 -15.9 Anthranilate synthase component 1 compare
PP_5097 -5.2 -11.0 homoserine O-acetyltransferase compare
PP_5348 -5.1 -11.8 Transcriptional regulator, LysR family compare
PP_2001 -5.1 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_5185 -5.0 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5303 -5.0 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0290 -5.0 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -5.0 -9.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -4.9 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_0691 -4.9 -13.3 Glutamate 5-kinase compare
PP_4679 -4.8 -3.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_0422 -4.8 -5.4 Indole-3-glycerol phosphate synthase compare
PP_5347 -4.7 -10.9 pyruvate carboxylase subunit A compare
PP_0291 -4.6 -3.2 conserved protein of unknown function compare
PP_5155 -4.5 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3999 -4.5 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -4.4 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5104 -4.1 -11.4 thiazole synthase compare
PP_0184 -4.1 -4.8 Argininosuccinate lyase compare
PP_0289 -4.1 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -4.0 -2.8 tryptophan synthase alpha chain compare
PP_5289 -4.0 -4.7 Acetylglutamate kinase compare
PP_0421 -4.0 -8.1 Anthranilate phosphoribosyltransferase compare
PP_5128 -4.0 -7.6 Dihydroxy-acid dehydratase compare
PP_4364 -3.9 -7.2 putative Anti-sigma F factor antagonist compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_0292 -3.8 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2414 -3.8 -2.5 conserved exported protein of unknown function compare
PP_0339 -3.7 -3.6 Pyruvate dehydrogenase E1 component compare
PP_4696 -3.7 -5.0 Nitrogen regulation protein NR(I) compare
PP_0420 -3.7 -11.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0362 -3.7 -11.6 Biotin synthase compare
PP_5095 -3.6 -6.6 pyrroline-5-carboxylate reductase compare
PP_5508 -3.6 -1.3 conserved protein of unknown function compare
PP_0164 -3.6 -9.7 conserved protein of unknown function compare
PP_0276 -3.5 -1.3 Transcriptional regulator, Cro/CI family compare
PP_2168 -3.5 -13.6 Transaldolase compare
PP_5015 -3.5 -5.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4940 -3.4 -8.5 Putative glycosyltransferase compare
PP_3821 -3.4 -12.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4699 -3.4 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0127 -3.4 -6.7 Thiol:disulfide interchange protein compare
PP_5014 -3.3 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0735 -3.3 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4701 -3.1 -1.1 glucose-6-phosphate isomerase compare
PP_0363 -3.0 -14.0 8-amino-7-oxononanoate synthase compare
PP_1233 -3.0 -6.8 sulfurtransferase compare
PP_1664 -3.0 -6.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1493 -3.0 -4.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4922 -2.9 -14.6 Phosphomethylpyrimidine synthase compare
PP_2328 -2.9 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_4782 -2.8 -6.2 Phosphomethylpyrimidine kinase compare
PP_2370 -2.8 -2.7 conserved protein of unknown function compare
PP_1025 -2.7 -8.0 2-isopropylmalate synthase compare
PP_1041 -2.7 -1.3 twin arginine protein export complex subunit compare
PP_3417 -2.7 -6.2 D-gluconate transporter compare
PP_2000 -2.6 -2.6 amidophosphoribosyl transferase compare
PP_0366 -2.6 -9.2 dethiobiotin synthetase compare
PP_0365 -2.6 -9.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1362 -2.5 -4.2 pyruvate kinase II compare
PP_4984 -2.5 -11.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1348 -2.5 -5.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0364 -2.4 -10.8 pimeloyl-[acp] methyl ester esterase compare
PP_5075 -2.4 -12.0 glutamate synthase (NADPH) beta subunit compare
PP_5350 -2.4 -5.4 Transcriptional regulator, RpiR family compare
PP_4342 -2.3 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_2087 -2.2 -2.9 CmpX protein compare
PP_5076 -2.2 -14.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_2433 -2.2 -1.9 conserved protein of unknown function compare
PP_1022 -2.0 -4.1 glucose 6-phosphate-1-dehydrogenase compare
PP_2348 -2.0 -4.4 Sensor histidine kinase compare
PP_4943 -1.9 -1.3 putative Glycosyl transferase compare
PP_4874 -1.9 -1.2 50S ribosomal protein L9 compare
PP_2302 -1.8 -5.7 DNA-binding, ATP-dependent protease compare
PP_1428 -1.8 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_1656 -1.8 -4.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_0846 -1.8 -1.3 DnaK-like molecular chaperone specific for IscU compare
PP_4500 -1.7 -3.2 TrpH family protein compare
PP_5216 -1.7 -3.6 exopolyphosphatase compare
PP_3243 -1.7 -2.4 Acetyltransferase, GNAT family compare
PP_0122 -1.7 -4.4 conserved exported protein of unknown function compare
PP_1293 -1.7 -1.2 molybdopterin synthase small subunit compare
PP_4004 -1.7 -4.3 DNA translocase FtsK compare
PP_4254 -1.6 -1.4 conserved protein of unknown function compare
PP_1468 -1.6 -2.7 Tyrosine recombinase XerD compare
PP_0513 -1.6 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1912 -1.6 -5.4 Phosphate acyltransferase compare
PP_4895 -1.6 -2.7 tRNA dimethylallyltransferase compare
PP_0856 -1.6 -3.3 conserved lipoprotein of unknown function compare
PP_0065 -1.6 -2.6 NAD-binding component of TrK potassium transporter compare
PP_5331 -1.5 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_5313 -1.5 -1.6 DNA-binding protein HU-alpha compare
PP_0612 -1.5 -7.5 FAD-dependent glycine/D-amino acid oxidase compare
PP_4363 -1.5 -6.6 Sensor histidine kinase/response regulator compare
PP_1216 -1.4 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1344 -1.4 -1.8 conserved protein of unknown function compare
PP_4227 -1.4 -1.5 conserved protein of unknown function compare
PP_5227 -1.4 -6.6 diaminopimelate decarboxylase compare
PP_2378 -1.4 -2.9 Fe/S biogenesis protein NfuA compare
PP_1629 -1.3 -3.4 Protein RecA compare
PP_2337 -1.3 -2.1 aconitate isomerase compare
PP_4130 -1.3 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1366 -1.3 -2.5 Transcriptional regulator MvaT, P16 subunit compare
PP_3935 -1.3 -1.9 conserved protein of unknown function compare
PP_5453 -1.3 -1.1 conserved protein of unknown function compare
PP_2402 -1.3 -1.7 putative Sensor histidine kinase compare
PP_1215 -1.3 -1.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_4213 -1.3 -2.4 putative dipeptidase compare
PP_1454 -1.2 -3.0 conserved protein of unknown function compare
PP_4642 -1.2 -0.6 Cyclic diguanosine monophosphate-binding protein compare
PP_2439 -1.2 -1.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_1217 -1.2 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0809 -1.2 -6.4 disulfide bond formation protein B compare
PP_4902 -1.2 -2.5 Oligoribonuclease compare
PP_4848 -1.2 -2.0 Curved DNA-binding protein compare
PP_1304 -1.2 -5.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4131 -1.2 -3.2 NADH-quinone oxidoreductase subunit N compare
PP_4018 -1.2 -2.8 Acetyltransferase, GNAT family compare
PP_3035 -1.2 -1.7 conserved protein of unknown function compare
PP_4098 -1.1 -0.8 UvrABC system protein C compare
PP_2031 -1.1 -1.3 conserved protein of unknown function compare
PP_3790 -1.1 -6.4 diaminopimelate epimerase compare
PP_0368 -1.1 -5.9 putative Acyl-CoA dehydrogenase compare
PP_2136 -1.1 -3.0 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4695 -1.1 -4.8 Sensory box histidine kinase compare
PP_5035 -1.1 -4.7 Histidine utilization repressor compare
PP_3603 -1.1 -4.4 Transcriptional regulator, GntR family compare
PP_5309 -1.1 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2029 -1.1 -1.4 von Willebrand factor type A domain protein compare
PP_4726 -1.1 -1.5 Chaperone protein DnaJ compare
PP_2908 -1.1 -3.2 DNA-binding transcriptional repressor compare
PP_0087 -1.1 -1.8 conserved exported protein of unknown function compare
PP_3876 -1.1 -1.3 conserved protein of unknown function compare
PP_3241 -1.1 -0.6 conserved exported protein of unknown function compare
PP_5198 -1.1 -2.7 conserved protein of unknown function compare
PP_1491 -1.1 -3.1 CheW domain protein compare
PP_4546 -1.1 -2.6 ATP-dependent helicase HrpA compare
PP_0381 -1.0 -5.0 Coenzyme PQQ synthesis protein F compare
PP_4124 -1.0 -1.7 NADH-quinone oxidoreductase subunit G compare
PP_2081 -1.0 -4.7 putative phosphoenolpyruvate synthase regulatory protein compare
PP_3506 -1.0 -2.6 Magnesium chelatase, subunit ChII compare
PP_4828 -1.0 -1.0 Precorrin-8X methylmutase compare
PP_1892 -1.0 -1.9 conserved protein of unknown function compare
PP_5203 -1.0 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_1994 -1.0 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_4776 -1.0 -5.4 AsnC family transcriptional regulator compare
PP_3539 -1.0 -2.3 putative Transcriptional regulator compare
PP_4739 -1.0 -1.1 conserved protein of unknown function compare
PP_4532 -1.0 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5110 -1.0 -0.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4121 -1.0 -1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_0738 -0.9 -1.6 conserved protein of unknown function compare
PP_3481 -0.9 -1.2 conserved exported protein of unknown function compare
PP_5717 -0.9 -2.3 conserved protein of unknown function compare
PP_3649 -0.9 -1.0 Transcriptional regulator, GntR family compare
PP_5427 -0.9 -1.4 conserved exported protein of unknown function compare
PP_1826 -0.9 -1.9 Hydrolase, isochorismatase family compare
PP_1009 -0.9 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PP_3817 -0.9 -2.9 Polyamine ABC transporter, ATP-binding protein compare
PP_1677 -0.9 -4.0 Adenosyl-cobyric acid synthase compare
PP_t29 -0.9 -0.8 tRNA-Ala compare
PP_0833 -0.9 -1.8 queuine tRNA-ribosyltransferase compare
PP_5168 -0.9 -1.1 sulfate/thiosulfate import ATP-binding protein compare
PP_1734 -0.9 -0.8 Probable septum site-determining protein MinC compare
PP_3637 -0.9 -2.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4120 -0.9 -1.5 NADH-quinone oxidoreductase subunit B compare
PP_1655 -0.9 -1.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5232 -0.9 -1.2 conserved protein of unknown function compare
PP_4266 -0.9 -2.6 Adenine phosphoribosyltransferase compare
PP_3384 -0.9 -3.1 gluconate 2-dehydrogenase gamma subunit compare
PP_1778 -0.9 -3.9 Lipopolysaccharide ABC export system, permease protein compare
PP_3105 -0.9 -1.1 conserved membrane protein of unknown function compare
PP_1038 -0.8 -0.9 conserved protein of unknown function compare
PP_5241 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
PP_4693 -0.8 -1.7 RNA polymerase-binding transcription factor DksA compare
PP_1045 -0.8 -1.7 Type II secretion pathway protein XcpP compare
PP_2375 -0.8 -5.9 cobalamin-dependent methionine synthase compare
PP_5217 -0.8 -6.9 Polyphosphate kinase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Sodium Chloride in Pseudomonas putida KT2440

For stress Sodium Chloride across organisms