Experiment set39IT042 for Pseudomonas putida KT2440
MOPS minimal media_Glucose20mM with Sodium Chloride 200 mM
Group: stressMedia: MOPS minimal media_Glucose20mM + Sodium Chloride (200 mM)
Culturing: Putida_ML5_JBEI, 24-well plate, Aerobic, at 30 (C), shaken=200 rpm
By: Allie Pearson on 28-Sep
Media components: 20 mM D-Glucose, 9.5 mM Ammonium chloride, 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 2 genes in this experiment
For stress Sodium Chloride in Pseudomonas putida KT2440
For stress Sodium Chloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Thiamin biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| glyphosate degradation II | 1 | 1 | 1 |
| thiazole component of thiamine diphosphate biosynthesis II | 7 | 4 | 1 |
| butanol and isobutanol biosynthesis (engineered) | 8 | 3 | 1 |
| superpathway of thiamine diphosphate biosynthesis II | 11 | 8 | 1 |