Experiment set39IT041 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Sodium Chloride 200 mM

200 most important genes:

  gene name fitness t score description  
PP_4724 -8.3 -14.8 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.3 -25.1 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.3 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.7 -4.6 dihydroorotase-like protein compare
PP_5346 -6.2 -10.4 pyruvate carboxylase subunit B compare
PP_3511 -6.2 -7.4 Branched-chain-amino-acid aminotransferase compare
PP_0787 -6.2 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1079 -6.2 -4.3 Ornithine carbamoyltransferase compare
PP_1988 -6.0 -4.2 3-isopropylmalate dehydrogenase compare
PP_0967 -6.0 -7.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1995 -5.9 -5.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -5.9 -7.0 Argininosuccinate synthase compare
PP_2327 -5.8 -6.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0966 -5.7 -7.8 Histidinol dehydrogenase compare
PP_1231 -5.6 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4678 -5.6 -8.6 Ketol-acid reductoisomerase compare
PP_5097 -5.6 -9.3 homoserine O-acetyltransferase compare
PP_0965 -5.6 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4680 -5.5 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -5.5 -5.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -5.5 -7.5 phosphoserine phosphatase compare
PP_0691 -5.4 -10.0 Glutamate 5-kinase compare
PP_4700 -5.3 -3.6 pantothenate synthetase compare
PP_5348 -5.3 -11.8 Transcriptional regulator, LysR family compare
PP_5098 -5.2 -6.2 methionine biosynthesis protein MetW compare
PP_0417 -5.2 -15.7 Anthranilate synthase component 1 compare
PP_5015 -5.2 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1985 -5.1 -6.1 3-isopropylmalate dehydratase large subunit compare
PP_5185 -5.1 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -4.9 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -4.8 -5.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_5347 -4.8 -11.5 pyruvate carboxylase subunit A compare
PP_4890 -4.7 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -4.5 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_2001 -4.4 -11.1 O-succinylhomoserine sulfhydrylase compare
PP_3999 -4.4 -4.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5128 -4.4 -8.6 Dihydroxy-acid dehydratase compare
PP_3821 -4.3 -17.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0421 -4.2 -8.9 Anthranilate phosphoribosyltransferase compare
PP_0184 -4.2 -4.0 Argininosuccinate lyase compare
PP_0292 -4.1 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5289 -4.0 -4.7 Acetylglutamate kinase compare
PP_0082 -4.0 -2.7 tryptophan synthase alpha chain compare
PP_0289 -4.0 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4696 -3.8 -5.2 Nitrogen regulation protein NR(I) compare
PP_2168 -3.8 -13.8 Transaldolase compare
PP_5303 -3.8 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4364 -3.8 -5.6 putative Anti-sigma F factor antagonist compare
PP_0339 -3.8 -2.6 Pyruvate dehydrogenase E1 component compare
PP_0164 -3.7 -9.3 conserved protein of unknown function compare
PP_5095 -3.6 -7.0 pyrroline-5-carboxylate reductase compare
PP_5104 -3.6 -9.1 thiazole synthase compare
PP_1233 -3.6 -10.4 sulfurtransferase compare
PP_5350 -3.5 -4.8 Transcriptional regulator, RpiR family compare
PP_4940 -3.5 -10.6 Putative glycosyltransferase compare
PP_0291 -3.3 -4.2 conserved protein of unknown function compare
PP_5014 -3.3 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -3.3 -4.5 tryptophan synthase beta chain compare
PP_0735 -3.3 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_4782 -3.3 -7.2 Phosphomethylpyrimidine kinase compare
PP_0362 -3.3 -10.9 Biotin synthase compare
PP_4922 -3.1 -13.6 Phosphomethylpyrimidine synthase compare
PP_2328 -3.1 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_0420 -3.1 -9.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2433 -3.1 -2.4 conserved protein of unknown function compare
PP_4699 -3.0 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1664 -3.0 -6.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_5054 -2.9 -2.0 glutaredoxin 3 compare
PP_1025 -2.9 -8.5 2-isopropylmalate synthase compare
PP_0363 -2.9 -12.5 8-amino-7-oxononanoate synthase compare
PP_0127 -2.8 -6.3 Thiol:disulfide interchange protein compare
PP_0366 -2.8 -8.9 dethiobiotin synthetase compare
PP_2883 -2.8 -1.4 conserved protein of unknown function compare
PP_2414 -2.7 -1.7 conserved exported protein of unknown function compare
PP_4984 -2.7 -13.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2000 -2.6 -2.5 amidophosphoribosyl transferase compare
PP_5075 -2.5 -12.9 glutamate synthase (NADPH) beta subunit compare
PP_1493 -2.4 -5.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5393 -2.4 -1.1 putative metal-binding chaperone compare
PP_4213 -2.4 -3.8 putative dipeptidase compare
PP_0365 -2.2 -9.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4004 -2.2 -4.9 DNA translocase FtsK compare
PP_1217 -2.1 -1.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4363 -2.0 -9.5 Sensor histidine kinase/response regulator compare
PP_0122 -2.0 -3.6 conserved exported protein of unknown function compare
PP_2348 -2.0 -4.7 Sensor histidine kinase compare
PP_5076 -1.9 -12.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_0364 -1.9 -9.2 pimeloyl-[acp] methyl ester esterase compare
PP_4943 -1.9 -1.3 putative Glycosyl transferase compare
PP_1054 -1.9 -2.0 Type II secretion pathway protein XcpZ compare
PP_1362 -1.9 -4.5 pyruvate kinase II compare
PP_1654 -1.9 -3.1 cysteine synthase B compare
PP_4874 -1.9 -1.2 50S ribosomal protein L9 compare
PP_5706 -1.9 -2.8 Sec translocation complex - SecG subunit compare
PP_1348 -1.9 -7.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4130 -1.8 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1428 -1.8 -3.5 Sigma factor AlgU negative regulatory protein compare
PP_5610 -1.8 -1.3 protein of unknown function compare
PP_1568 -1.8 -1.1 conserved protein of unknown function compare
PP_1468 -1.7 -3.7 Tyrosine recombinase XerD compare
PP_2087 -1.7 -2.3 CmpX protein compare
PP_1022 -1.7 -3.5 glucose 6-phosphate-1-dehydrogenase compare
PP_2442 -1.7 -1.8 conserved protein of unknown function, DUF480 family compare
PP_2370 -1.7 -2.0 conserved protein of unknown function compare
PP_3105 -1.6 -2.1 conserved membrane protein of unknown function compare
PP_2136 -1.6 -4.7 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_0246 -1.6 -2.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_4701 -1.6 -0.8 glucose-6-phosphate isomerase compare
PP_2309 -1.6 -1.1 conserved protein of unknown function compare
PP_5227 -1.5 -6.8 diaminopimelate decarboxylase compare
PP_5216 -1.5 -4.8 exopolyphosphatase compare
PP_3637 -1.5 -3.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1656 -1.4 -3.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_1216 -1.4 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2302 -1.4 -4.9 DNA-binding, ATP-dependent protease compare
PP_3505 -1.4 -1.7 conserved protein of unknown function compare
PP_0065 -1.4 -2.7 NAD-binding component of TrK potassium transporter compare
PP_0377 -1.4 -1.1 coenzyme PQQ synthesis protein D compare
PP_4895 -1.4 -2.5 tRNA dimethylallyltransferase compare
PP_3876 -1.4 -1.1 conserved protein of unknown function compare
PP_4917 -1.4 -3.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5486 -1.4 -2.9 conserved protein of unknown function compare
PP_3359 -1.4 -1.1 putative Hydroxycinnamic acid degradation regulator compare
PP_3487 -1.4 -1.6 conserved exported protein of unknown function compare
PP_2439 -1.3 -1.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4902 -1.3 -2.6 Oligoribonuclease compare
PP_3603 -1.3 -4.6 Transcriptional regulator, GntR family compare
PP_1779 -1.3 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4804 -1.3 -3.9 RlpA-like lipoprotein compare
PP_4122 -1.3 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0401 -1.3 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_3649 -1.3 -0.9 Transcriptional regulator, GntR family compare
PP_2718 -1.3 -2.7 arsenic resistance transcriptional regulator compare
PP_1912 -1.3 -4.0 Phosphate acyltransferase compare
PP_4961 -1.3 -1.1 putative Lipoprotein compare
PP_0368 -1.3 -6.7 putative Acyl-CoA dehydrogenase compare
PP_4726 -1.2 -1.6 Chaperone protein DnaJ compare
PP_0612 -1.2 -7.2 FAD-dependent glycine/D-amino acid oxidase compare
PP_2499 -1.2 -1.0 conserved protein of unknown function compare
PP_1218 -1.2 -1.5 putative acyl-CoA thioesterase compare
PP_1763 -1.2 -1.6 putative oxidoreductase compare
PP_4546 -1.2 -3.0 ATP-dependent helicase HrpA compare
PP_3417 -1.2 -2.9 D-gluconate transporter compare
PP_t29 -1.2 -1.3 tRNA-Ala compare
PP_3484 -1.1 -4.2 Response regulator receiver protein compare
PP_2402 -1.1 -1.6 putative Sensor histidine kinase compare
PP_4964 -1.1 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4936 -1.1 -5.1 O-antigen polymerase compare
PP_4098 -1.1 -0.7 UvrABC system protein C compare
PP_0833 -1.1 -2.2 queuine tRNA-ribosyltransferase compare
PP_1826 -1.1 -2.0 Hydrolase, isochorismatase family compare
PP_1672 -1.1 -4.6 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0856 -1.1 -2.6 conserved lipoprotein of unknown function compare
PP_5248 -1.1 -0.7 putative hydrolase compare
PP_5203 -1.1 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_2650 -1.1 -1.3 putative 4-hydroxybutyrate dehydrogenase compare
PP_5309 -1.1 -0.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2345 -1.1 -2.3 conserved exported protein of unknown function compare
PP_1673 -1.1 -3.8 cobyrinate a,c-diamide synthase compare
PP_3899 -1.1 -2.1 conserved protein of unknown function, hicB family compare
PP_5240 -1.0 -2.4 Response regulator compare
PP_3790 -1.0 -6.9 diaminopimelate epimerase compare
PP_0809 -1.0 -5.2 disulfide bond formation protein B compare
PP_1237 -1.0 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0381 -1.0 -4.6 Coenzyme PQQ synthesis protein F compare
PP_4591 -1.0 -2.9 Ribonuclease D compare
PP_1009 -1.0 -4.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_1304 -1.0 -5.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1836 -1.0 -2.4 putative metal transporter, ZIP family compare
PP_4215 -1.0 -2.5 pyoverdine biosynthesis related protein compare
PP_1655 -1.0 -1.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3730 -1.0 -1.4 Transcriptional regulatory protein AruR compare
PP_0916 -0.9 -1.2 Amino acid transporter LysE compare
PP_1176 -0.9 -1.5 conserved protein of unknown function compare
PP_1491 -0.9 -2.4 CheW domain protein compare
PP_2378 -0.9 -2.4 Fe/S biogenesis protein NfuA compare
PP_2597 -0.9 -3.4 conserved protein of unknown function compare
PP_4776 -0.9 -5.2 AsnC family transcriptional regulator compare
PP_0703 -0.9 -1.7 putative Transmembrane sensor compare
PP_5035 -0.9 -3.6 Histidine utilization repressor compare
PP_1734 -0.9 -0.6 Probable septum site-determining protein MinC compare
PP_4630 -0.9 -2.5 Transcriptional regulator, MerR family compare
PP_4124 -0.9 -1.8 NADH-quinone oxidoreductase subunit G compare
PP_2714 -0.9 -4.0 Sensor histidine kinase compare
PP_4507 -0.9 -5.2 potassium transporter compare
PP_2533 -0.9 -2.8 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_4695 -0.9 -4.0 Sensory box histidine kinase compare
PP_2003 -0.9 -2.8 conserved protein of unknown function compare
PP_0393 -0.9 -0.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1310 -0.9 -1.3 conserved hypothetical protein compare
PP_4938 -0.8 -4.7 putative Glycosyl transferase compare
PP_4693 -0.8 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_0585 -0.8 -1.6 putative metal-sensitive transcriptional regulator, MerR family compare
PP_4977 -0.8 -5.6 5,10-methylenetetrahydrofolate reductase compare
PP_0007 -0.8 -1.4 conserved hypothetical protein compare
PP_1552 -0.8 -1.6 putative Phage replication protein compare
PP_2388 -0.8 -3.1 Transporter, LysE family compare
PP_3198 -0.8 -1.3 Ferredoxin, 2Fe-2S compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chloride in Pseudomonas putida KT2440

For stress Sodium Chloride across organisms