Experiment set39IT040 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Lithium chloride 200 mM

200 most important genes:

  gene name fitness t score description  
PP_4724 -8.0 -14.5 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.8 -25.5 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.4 -4.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.9 -4.8 dihydroorotase-like protein compare
PP_3511 -6.5 -6.4 Branched-chain-amino-acid aminotransferase compare
PP_1995 -6.3 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -6.2 -7.3 Argininosuccinate synthase compare
PP_1079 -6.0 -5.9 Ornithine carbamoyltransferase compare
PP_0422 -6.0 -5.8 Indole-3-glycerol phosphate synthase compare
PP_1985 -5.8 -5.7 3-isopropylmalate dehydratase large subunit compare
PP_4909 -5.8 -6.9 phosphoserine phosphatase compare
PP_1988 -5.8 -6.9 3-isopropylmalate dehydrogenase compare
PP_0965 -5.8 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0787 -5.7 -5.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4680 -5.7 -5.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -5.7 -12.7 pyruvate carboxylase subunit B compare
PP_4678 -5.7 -9.5 Ketol-acid reductoisomerase compare
PP_5097 -5.6 -10.8 homoserine O-acetyltransferase compare
PP_0967 -5.5 -9.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1231 -5.5 -6.5 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5289 -5.3 -3.6 Acetylglutamate kinase compare
PP_0966 -5.2 -10.6 Histidinol dehydrogenase compare
PP_2433 -5.2 -3.2 conserved protein of unknown function compare
PP_5185 -5.1 -5.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5098 -5.1 -6.9 methionine biosynthesis protein MetW compare
PP_4679 -5.0 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -4.9 -9.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0691 -4.8 -19.3 Glutamate 5-kinase compare
PP_4700 -4.7 -5.6 pantothenate synthetase compare
PP_0290 -4.7 -6.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4890 -4.6 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -4.5 -13.7 pyruvate carboxylase subunit A compare
PP_2001 -4.5 -9.0 O-succinylhomoserine sulfhydrylase compare
PP_2371 -4.5 -4.4 Sulphite reductase hemoprotein, beta subunit compare
PP_0184 -4.5 -3.1 Argininosuccinate lyase compare
PP_5015 -4.4 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5348 -4.4 -12.4 Transcriptional regulator, LysR family compare
PP_0289 -4.3 -7.7 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -4.3 -6.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0421 -4.2 -6.9 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_1986 -4.1 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_0292 -4.1 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -4.1 -2.8 tryptophan synthase beta chain compare
PP_5350 -3.9 -6.0 Transcriptional regulator, RpiR family compare
PP_5095 -3.9 -8.8 pyrroline-5-carboxylate reductase compare
PP_5303 -3.8 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0339 -3.7 -4.4 Pyruvate dehydrogenase E1 component compare
PP_3105 -3.6 -2.8 conserved membrane protein of unknown function compare
PP_5128 -3.6 -6.3 Dihydroxy-acid dehydratase compare
PP_4517 -3.5 -2.4 conserved protein of unknown function compare
PP_5014 -3.4 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4701 -3.3 -1.2 glucose-6-phosphate isomerase compare
PP_2414 -3.2 -2.0 conserved exported protein of unknown function compare
PP_0291 -3.1 -5.8 conserved protein of unknown function compare
PP_1362 -3.0 -4.6 pyruvate kinase II compare
PP_4696 -3.0 -6.2 Nitrogen regulation protein NR(I) compare
PP_0164 -3.0 -11.8 conserved protein of unknown function compare
PP_5104 -2.9 -10.0 thiazole synthase compare
PP_0417 -2.9 -18.6 Anthranilate synthase component 1 compare
PP_2499 -2.9 -1.5 conserved protein of unknown function compare
PP_2000 -2.9 -2.8 amidophosphoribosyl transferase compare
PP_0420 -2.8 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4782 -2.6 -7.5 Phosphomethylpyrimidine kinase compare
PP_0362 -2.5 -11.1 Biotin synthase compare
PP_5155 -2.5 -2.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2168 -2.5 -11.4 Transaldolase compare
PP_2328 -2.5 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_1233 -2.4 -8.1 sulfurtransferase compare
PP_2388 -2.4 -7.0 Transporter, LysE family compare
PP_4699 -2.4 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2370 -2.3 -2.9 conserved protein of unknown function compare
PP_1025 -2.3 -6.3 2-isopropylmalate synthase compare
PP_1664 -2.3 -5.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1022 -2.2 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_1217 -2.2 -1.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0065 -2.2 -3.3 NAD-binding component of TrK potassium transporter compare
PP_1656 -2.1 -6.2 ATP:GTP 3'-pyrophosphotransferase compare
PP_4922 -2.1 -12.0 Phosphomethylpyrimidine synthase compare
PP_5075 -2.0 -11.8 glutamate synthase (NADPH) beta subunit compare
PP_3821 -1.9 -12.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2348 -1.9 -4.9 Sensor histidine kinase compare
PP_4364 -1.9 -4.7 putative Anti-sigma F factor antagonist compare
PP_5267 -1.9 -2.2 putative cytochrome c5 compare
PP_0735 -1.8 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_4943 -1.8 -1.7 putative Glycosyl transferase compare
PP_5076 -1.8 -12.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_0856 -1.8 -3.7 conserved lipoprotein of unknown function compare
PP_4004 -1.8 -4.4 DNA translocase FtsK compare
PP_0593 -1.7 -0.8 putative ribosome-binding factor compare
PP_1994 -1.6 -2.6 tRNA pseudouridine (38-40)synthase compare
PP_1428 -1.6 -3.4 Sigma factor AlgU negative regulatory protein compare
PP_4199 -1.6 -1.3 putative Lipoprotein compare
PP_2773 -1.6 -1.7 conserved protein of unknown function compare
PP_2060 -1.6 -1.9 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_3637 -1.6 -3.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1310 -1.6 -3.4 conserved hypothetical protein compare
PP_5571 -1.6 -1.2 conserved protein of unknown function compare
PP_1763 -1.5 -3.0 putative oxidoreductase compare
PP_4993 -1.5 -3.6 Glutathione synthetase compare
PP_1468 -1.5 -2.2 Tyrosine recombinase XerD compare
PP_0127 -1.5 -7.9 Thiol:disulfide interchange protein compare
PP_0152 -1.5 -1.3 conserved exported protein of unknown function compare
PP_4122 -1.5 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4952 -1.4 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4515 -1.4 -4.8 Transcriptional regulator, MarR family compare
PP_4500 -1.4 -4.2 TrpH family protein compare
PP_2864 -1.4 -2.8 conserved protein of unknown function compare
PP_0122 -1.4 -2.8 conserved exported protein of unknown function compare
PP_1655 -1.4 -2.9 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4507 -1.3 -8.3 potassium transporter compare
PP_1309 -1.3 -4.9 conserved exported protein of unknown function compare
PP_1348 -1.3 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2581 -1.3 -1.2 conserved protein of unknown function compare
PP_2439 -1.3 -1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_1654 -1.3 -3.2 cysteine synthase B compare
PP_0846 -1.3 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_1293 -1.3 -1.1 molybdopterin synthase small subunit compare
PP_1783 -1.3 -0.8 dTDP-glucose pyrophosphorylase compare
PP_5309 -1.3 -0.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3443 -1.2 -7.8 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_5248 -1.2 -0.8 putative hydrolase compare
PP_1041 -1.2 -1.2 twin arginine protein export complex subunit compare
PP_4880 -1.2 -4.4 exoribonuclease R compare
PP_1683 -1.2 -1.7 Transcriptional regulator, MarR family compare
PP_5168 -1.2 -1.3 sulfate/thiosulfate import ATP-binding protein compare
PP_4121 -1.2 -1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_3551 -1.2 -1.0 DNA-binding response regulator, LuxR family compare
PP_1629 -1.2 -3.5 Protein RecA compare
PP_2899 -1.1 -1.2 conserved exported protein of unknown function compare
PP_2203 -1.1 -1.6 conserved protein of unknown function compare
PP_5232 -1.1 -1.6 conserved protein of unknown function compare
PP_2302 -1.1 -4.4 DNA-binding, ATP-dependent protease compare
PP_1912 -1.1 -4.1 Phosphate acyltransferase compare
PP_4697 -1.1 -2.6 poly(A) polymerase compare
PP_1387 -1.1 -3.4 Probable HTH-type transcriptional regulator TtgR compare
PP_4528 -1.1 -0.8 conserved protein of unknown function compare
PP_4940 -1.1 -5.4 Putative glycosyltransferase compare
PP_1493 -1.0 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3505 -1.0 -2.3 conserved protein of unknown function compare
PP_0393 -1.0 -1.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4296 -1.0 -1.1 conserved exported protein of unknown function compare
PP_5054 -1.0 -1.5 glutaredoxin 3 compare
PP_2441 -1.0 -2.5 conserved protein of unknown function compare
PP_4631 -1.0 -3.7 conserved protein of unknown function compare
PP_4130 -1.0 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4917 -1.0 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3522 -1.0 -1.4 conserved protein of unknown function compare
PP_5508 -1.0 -0.7 conserved protein of unknown function compare
PP_2029 -0.9 -1.3 von Willebrand factor type A domain protein compare
PP_1774 -0.9 -1.4 conserved exported protein of unknown function compare
PP_2402 -0.9 -1.3 putative Sensor histidine kinase compare
PP_2714 -0.9 -3.7 Sensor histidine kinase compare
PP_2299 -0.9 -2.3 Trigger factor compare
PP_1145 -0.9 -5.6 RNA polymerase-associated protein RapA compare
PP_0319 -0.9 -1.5 conserved protein of unknown function compare
PP_2107 -0.9 -1.8 conserved protein of unknown function compare
PP_5706 -0.9 -1.6 Sec translocation complex - SecG subunit compare
PP_5701 -0.9 -0.9 conserved protein of unknown function compare
PP_3765 -0.9 -3.2 H-NS family protein MvaT compare
PP_2087 -0.9 -1.6 CmpX protein compare
PP_1111 -0.9 -3.2 putative Synthetase compare
PP_2137 -0.9 -1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_5437 -0.9 -2.7 protein of unknown function compare
PP_2682 -0.9 -2.3 Fe-containing alcohol dehydrogenase compare
PP_1322 -0.9 -0.9 putative Lipoprotein compare
PP_5331 -0.8 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_1734 -0.8 -1.1 Probable septum site-determining protein MinC compare
PP_0801 -0.8 -1.5 conserved exported protein of unknown function compare
PP_4977 -0.8 -5.3 5,10-methylenetetrahydrofolate reductase compare
PP_3248 -0.8 -0.6 Dyp-type peroxidase family protein compare
PP_5110 -0.8 -0.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2794 -0.8 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4804 -0.8 -2.9 RlpA-like lipoprotein compare
PP_0401 -0.8 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_2136 -0.8 -3.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4707 -0.8 -1.2 OsmY-related protein compare
PP_5227 -0.8 -4.0 diaminopimelate decarboxylase compare
PP_2540 -0.8 -1.5 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1679 -0.8 -3.2 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4799 -0.8 -0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1552 -0.8 -2.6 putative Phage replication protein compare
PP_0150 -0.8 -2.6 conserved exported protein of unknown function compare
PP_3649 -0.8 -1.1 Transcriptional regulator, GntR family compare
PP_4980 -0.8 -4.3 ATP-dependent RNA helicase compare
PP_4892 -0.8 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1057 -0.8 -3.0 Transcriptional regulator, PadR family compare
PP_5717 -0.8 -1.8 conserved protein of unknown function compare
PP_5201 -0.8 -1.3 conserved protein of unknown function, UPF0149 family compare
PP_5216 -0.8 -1.7 exopolyphosphatase compare
PP_4254 -0.8 -0.9 conserved protein of unknown function compare
PP_3241 -0.8 -0.5 conserved exported protein of unknown function compare
PP_0218 -0.8 -4.5 Sensory box protein compare
PP_3508 -0.8 -1.8 Protein CobW compare
PP_5114 -0.7 -0.5 putative adenine methyltransferase compare
PP_2768 -0.7 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5313 -0.7 -1.1 DNA-binding protein HU-alpha compare
PP_3064 -0.7 -0.6 Phage tail protein compare
PP_2409 -0.7 -2.0 cobalt-zinc-cadmium resistance protein compare
PP_4342 -0.7 -1.7 flagellar synthesis regulator, putative ATPase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Lithium chloride in Pseudomonas putida KT2440

For stress Lithium chloride across organisms