Experiment set39IT040 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Lithium chloride 200 mM

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +3.7 20.0 Phosphocarrier protein HPr compare
PP_5145 +3.5 29.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0340 +1.9 14.9 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4642 +1.6 1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_5483 +1.4 1.5 conserved protein of unknown function compare
PP_5146 +1.4 4.8 RNA pyrophosphohydrolase compare
PP_4593 +1.3 1.9 conserved protein of unknown function compare
PP_5441 +1.2 2.5 protein of unknown function compare
PP_3726 +1.1 1.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_1808 +1.1 3.0 glucose-6-phosphate isomerase compare
PP_1215 +1.1 1.3 Crossover junction endodeoxyribonuclease RuvC compare
PP_2640 +1.0 3.3 Acetyltransferase, GNAT family compare
PP_3417 +1.0 4.8 D-gluconate transporter compare
PP_4504 +1.0 1.2 conserved exported protein of unknown function compare
PP_3874 +1.0 2.1 conserved protein of unknown function compare
PP_3365 +1.0 1.3 Acetolactate synthase compare
PP_1650 +1.0 8.8 Sensor protein GacS compare
PP_5048 +1.0 4.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2403 +1.0 1.4 Chemotaxis protein CheY compare
PP_3239 +0.9 1.9 putative cointegrate resolution protein T Tn4652 compare
PP_4944 +0.9 5.5 Carbamoyltransferase compare
PP_5652 +0.9 1.7 conserved protein of unknown function, phage origin compare
PP_2387 +0.9 2.4 conserved protein of unknown function compare
PP_0276 +0.9 1.0 Transcriptional regulator, Cro/CI family compare
PP_3829 +0.9 3.8 Molybdenum transport system permease protein ModB compare
PP_2101 +0.9 3.1 DNA-binding response regulator in two-component regulatory system with EvgS compare
PP_1328 +0.9 1.6 Protein MraZ compare
PP_4099 +0.9 8.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0232 +0.8 0.9 ATP-binding taurine transporter subunit compare
PP_2309 +0.8 1.1 conserved protein of unknown function compare
PP_4171 +0.8 6.7 conserved exported protein of unknown function compare
PP_0574 +0.8 6.0 DNA-binding response regulator, LuxR family compare
PP_1513 +0.8 2.1 Ribosomal RNA small subunit methyltransferase J compare
PP_4833 +0.8 2.6 SURF1 domain protein compare
PP_3880 +0.8 1.3 conserved exported protein of unknown function compare
PP_0806 +0.8 7.6 putative Surface adhesion protein compare
PP_4845 +0.8 2.1 putative Urea ABC transporter, ATP-binding protein compare
PP_2378 +0.8 2.4 Fe/S biogenesis protein NfuA compare
PP_5329 +0.8 5.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2118 +0.7 2.4 conserved protein of unknown function compare
PP_0643 +0.7 1.4 protein of unknown function compare
PP_4247 +0.7 1.1 Exonuclease compare
PP_1445 +0.7 5.3 carbohydrate-selective porin compare
PP_5176 +0.7 1.6 conserved protein of unknown function compare
PP_5359 +0.7 0.9 CobW/P47K family protein compare
PP_1268 +0.7 2.3 putative HtrA suppressor protein sohA compare
PP_5328 +0.7 2.9 putative phosphate transport system permease protein compare
PP_2878 +0.7 0.9 conserved protein of unknown function compare
PP_0509 +0.7 1.5 conserved protein of unknown function compare
PP_3312 +0.7 1.7 putative Heat shock protein compare
PP_0547 +0.7 3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1017 +0.7 3.3 mannose/glucose ABC transporter, permease protein compare
PP_0959 +0.7 2.1 phospholipid ABC transporter compare
PP_0137 +0.7 4.4 glutamate/aspartate-proton DAACS transporter compare
PP_2526 +0.7 1.3 conserved membrane protein of unknown function compare
PP_5475 +0.7 1.2 conserved protein of unknown function compare
PP_0685 +0.7 2.5 conserved protein of unknown function compare
PP_5093 +0.7 0.5 twitching motility protein compare
PP_4942 +0.7 1.3 conserved protein of unknown function compare
PP_0839 +0.7 1.0 tRNA Cm32/Um32 methyltransferase compare
PP_4836 +0.7 2.8 conserved exported protein of unknown function compare
PP_1623 +0.7 4.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_0246 +0.7 1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_2031 +0.7 1.2 conserved protein of unknown function compare
PP_1099 +0.7 1.3 Cold shock protein CapB compare
PP_5545 +0.6 3.2 protein of unknown function compare
PP_4957 +0.6 1.5 conserved protein of unknown function compare
PP_4136 +0.6 0.5 Transcriptional regulator, LuxR family compare
PP_2903 +0.6 1.2 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3802 +0.6 2.4 putative Cation ABC transporter, ATP-binding protein compare
PP_1646 +0.6 3.4 putative Thioredoxin compare
PP_1466 +0.6 1.7 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1841 +0.6 2.5 Cytochrome c family protein compare
PP_5547 +0.6 2.7 protein of unknown function compare
PP_5225 +0.6 0.8 frataxin compare
PP_3245 +0.6 1.2 conserved protein of unknown function compare
PP_3903 +0.6 1.3 conserved protein of unknown function compare
PP_1381 +0.6 1.5 4-carboxymuconolactone decarboxylase compare
PP_t49 +0.6 2.4 tRNA-Met compare
PP_1938 +0.6 1.7 conserved protein of unknown function compare
PP_0833 +0.6 1.8 queuine tRNA-ribosyltransferase compare
PP_1385 +0.6 5.5 Probable efflux pump membrane transporter TtgB compare
PP_2192 +0.6 1.7 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_4941 +0.6 3.9 conserved exported protein of unknown function compare
PP_5423 +0.6 0.7 conserved membrane protein of unknown function compare
PP_5546 +0.6 1.2 conserved protein of unknown function compare
PP_0058 +0.6 5.5 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_5528 +0.6 1.2 conserved protein of unknown function compare
PP_5707 +0.6 1.3 conserved protein of unknown function compare
PP_1208 +0.6 1.5 conserved protein of unknown function, SlyX family compare
PP_4262 +0.6 1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0313 +0.6 1.3 putative electron transfer flavoprotein beta subunit compare
PP_4273 +0.6 0.7 Transcriptional regulator, MerR family compare
PP_4844 +0.6 1.5 putative Urea ABC transporter, ATP-binding protein compare
PP_0891 +0.6 2.1 conserved exported protein of unknown function compare
PP_2361 +0.6 2.6 putative chaperone protein compare
PP_5038 +0.6 1.0 conserved lipoprotein of unknown function compare
PP_0804 +0.6 3.7 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_2575 +0.6 0.7 conserved exported protein of unknown function compare
PP_5456 +0.5 0.5 conserved protein of unknown function compare
PP_0805 +0.5 4.1 Outer membrane efflux protein compare
PP_2181 +0.5 2.0 Transcriptional regulator, Cro/CI family compare
PP_5473 +0.5 1.5 putative transcriptional regulator, LuxR family compare
PP_0826 +0.5 2.7 phosphonate ABC transporter, permease protein compare
PP_4451 +0.5 2.3 conserved protein of unknown function compare
PP_1018 +0.5 2.1 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5167 +0.5 1.4 conserved hypothetical protein compare
PP_4228 +0.5 1.4 conserved protein of unknown function compare
PP_1015 +0.5 2.5 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_0803 +0.5 3.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1589 +0.5 3.7 uridylyltransferase compare
PP_1153 +0.5 1.3 putative lipoprotein compare
PP_1067 +0.5 3.8 Sensor histidine kinase compare
PP_5532 +0.5 2.6 conserved protein of unknown function compare
PP_4929 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_4018 +0.5 1.6 Acetyltransferase, GNAT family compare
PP_1568 +0.5 0.6 conserved protein of unknown function compare
PP_3585 +0.5 2.7 multidrug efflux transport system - putative membrane fusion protein compare
PP_0607 +0.5 1.0 putative Type IV pili biogenesis protein FimT compare
PP_5001 +0.5 1.0 protease HslVU, ATPase component compare
PP_5327 +0.5 4.1 putative phosphate ABC transporter, permease subunit compare
PP_2633 +0.5 0.8 conserved protein of unknown function compare
PP_1987 +0.5 0.9 Methlytransferase, UbiE/COQ5 family compare
PP_2360 +0.5 2.7 putative type 1 pili subunit CsuA/B protein compare
PP_3846 +0.5 2.3 (R)-stereoselective amidase compare
PP_t12 +0.5 0.4 tRNA-Thr compare
PP_4184 +0.5 3.0 branched chain amino acid transporter compare
PP_2147 +0.5 1.9 conserved exported protein of unknown function compare
PP_4159 +0.5 0.8 Potassium-transporting ATPase C chain compare
PP_1369 +0.5 2.2 conserved protein of unknown function compare
PP_1689 +0.5 3.6 putative Long-chain fatty acid transporter compare
PP_4663 +0.5 2.8 conserved transmembrane protein of unknown function compare
PP_5658 +0.5 1.4 protein of unknown function compare
PP_3944 +0.5 2.5 6-hydroxynicotinate 3-monooxygenase compare
PP_4204 +0.5 2.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4139 +0.5 1.5 conserved protein of unknown function compare
PP_2070 +0.5 1.3 Transcriptional regulator, AraC family compare
PP_4214 +0.5 1.8 pyoverdine biosynthesis related protein compare
PP_5640 +0.5 1.1 conserved protein of unknown function compare
PP_1386 +0.5 3.0 Probable efflux pump periplasmic linker TtgA compare
PP_4628 +0.5 1.6 conserved protein of unknown function compare
PP_1459 +0.5 1.8 CBS domain protein compare
PP_3191 +0.5 1.9 putative threonine ammonia-lyase / dehydratase compare
PP_2960 +0.5 1.4 transcriptional regulator, AraC family compare
PP_5647 +0.5 2.7 conserved protein of unknown function compare
PP_4629 +0.5 1.5 Sensory box protein compare
PP_1521 +0.5 2.1 conserved protein of unknown function compare
PP_3825 +0.5 1.6 conserved protein of unknown function compare
PP_2804 +0.5 1.6 Hydrolase, alpha/beta fold family compare
PP_3204 +0.5 1.2 conserved protein of unknown function compare
PP_1020 +0.5 1.6 putative glucose-6-phosphate 1-epimerase compare
PP_1292 +0.5 2.4 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1384 +0.5 3.8 Probable efflux pump outer membrane protein TtgC compare
PP_3012 +0.5 1.6 conserved protein of unknown function compare
PP_0591 +0.5 1.9 Adenine deaminase compare
PP_3488 +0.5 2.1 Sco1/SenC family protein compare
PP_4848 +0.4 1.1 Curved DNA-binding protein compare
PP_2648 +0.4 1.8 Universal stress protein family compare
PP_4493 +0.4 3.4 D-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
PP_2927 +0.4 2.9 conserved protein of unknown function compare
PP_1739 +0.4 1.4 conserved membrane protein of unknown function compare
PP_0848 +0.4 0.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3560 +0.4 1.5 Transcriptional regulator, LysR family compare
PP_4094 +0.4 0.8 conserved protein of unknown function compare
PP_5SB +0.4 1.4 5S ribosomal RNA compare
PP_2759 +0.4 1.2 ribose ABC transporter - ATP-binding subunit compare
PP_3924 +0.4 2.1 conserved protein of unknown function compare
PP_0202 +0.4 1.4 CBS domain-containing protein compare
PP_1042 +0.4 2.3 Type II secretion system protein K compare
PP_1839 +0.4 2.7 conserved protein of unknown function compare
PP_2243 +0.4 1.4 conserved protein of unknown function compare
PP_5042 +0.4 1.7 conserved protein of unknown function compare
PP_5666 +0.4 2.4 putative microcin B17-like processing protein, McbB family compare
PP_0001 +0.4 0.6 probable chromosome-partitioning protein compare
PP_1817 +0.4 2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0960 +0.4 2.5 phospholipid ABC transporter binding protein compare
PP_2937 +0.4 1.6 putative Integrase compare
PP_3043 +0.4 0.6 conserved protein of unknown function compare
PP_5333 +0.4 2.3 conserved exported protein of unknown function compare
PP_1504 +0.4 2.6 conserved protein of unknown function compare
PP_1473 +0.4 1.7 conserved protein of unknown function compare
PP_2313 +0.4 1.4 conserved membrane protein of unknown function compare
PP_3810 +0.4 0.7 conserved protein of unknown function compare
PP_1922 +0.4 1.2 conserved protein of unknown function compare
PP_1122 +0.4 0.6 OmpA family protein compare
PP_0191 +0.4 0.9 Transcriptional regulatory protein AlgQ compare
PP_0980 +0.4 2.1 Probable cytosol aminopeptidase compare
PP_0134 +0.4 2.4 conserved exported protein of unknown function compare
PP_3061 +0.4 1.3 conserved protein of unknown function compare
PP_3523 +0.4 1.9 conserved protein of unknown function compare
PP_5735 +0.4 1.0 conserved hypothetical protein compare
PP_2319 +0.4 1.8 conserved protein of unknown function compare
PP_4268 +0.4 0.7 nucleoid-associated broad specificity regulator compare
PP_0195 +0.4 0.5 conserved protein of unknown function compare
PP_1071 +0.4 2.5 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_3051 +0.4 1.7 Pyocin R2_PP, tail spike protein compare
PP_5355 +0.4 2.5 putative Sodium/proton antiporter compare
PP_4406 +0.4 1.5 conserved protein of unknown function compare
PP_1016 +0.4 2.6 mannose/glucose ABC transporter, permease protein compare
PP_4197 +0.4 2.9 Transcriptional regulator, GntR family compare


Specific Phenotypes

For 1 genes in this experiment

For stress Lithium chloride in Pseudomonas putida KT2440

For stress Lithium chloride across organisms