Experiment set39IT039 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Lithium chloride 200 mM

200 most important genes:

  gene name fitness t score description  
PP_4724 -7.6 -12.2 Carbamoyl-phosphate synthase small chain compare
PP_4723 -7.1 -28.1 Carbamoyl-phosphate synthase large chain compare
PP_4999 -6.9 -4.8 dihydroorotase-like protein compare
PP_0787 -6.4 -4.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.4 -4.4 Indole-3-glycerol phosphate synthase compare
PP_1079 -6.3 -4.4 Ornithine carbamoyltransferase compare
PP_1995 -6.3 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -6.0 -8.3 Argininosuccinate synthase compare
PP_4678 -5.8 -8.0 Ketol-acid reductoisomerase compare
PP_2327 -5.8 -7.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4909 -5.8 -5.6 phosphoserine phosphatase compare
PP_3511 -5.7 -8.8 Branched-chain-amino-acid aminotransferase compare
PP_4890 -5.7 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0966 -5.6 -10.2 Histidinol dehydrogenase compare
PP_1988 -5.6 -6.7 3-isopropylmalate dehydrogenase compare
PP_5097 -5.6 -10.1 homoserine O-acetyltransferase compare
PP_0293 -5.6 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5346 -5.4 -14.3 pyruvate carboxylase subunit B compare
PP_4680 -5.3 -9.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1231 -5.3 -6.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0965 -5.1 -12.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -5.1 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -5.1 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4679 -5.0 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0290 -4.9 -5.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -4.8 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5289 -4.8 -4.7 Acetylglutamate kinase compare
PP_1985 -4.8 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_5098 -4.6 -8.3 methionine biosynthesis protein MetW compare
PP_2001 -4.6 -8.5 O-succinylhomoserine sulfhydrylase compare
PP_5347 -4.4 -14.2 pyruvate carboxylase subunit A compare
PP_0184 -4.4 -4.3 Argininosuccinate lyase compare
PP_0289 -4.4 -8.5 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -4.3 -5.2 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.3 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4700 -4.3 -6.6 pantothenate synthetase compare
PP_0691 -4.3 -20.3 Glutamate 5-kinase compare
PP_5128 -4.3 -8.0 Dihydroxy-acid dehydratase compare
PP_0292 -4.2 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_0421 -4.2 -6.7 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.1 -2.8 tryptophan synthase beta chain compare
PP_1986 -4.0 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_0339 -3.9 -3.8 Pyruvate dehydrogenase E1 component compare
PP_4696 -3.6 -6.0 Nitrogen regulation protein NR(I) compare
PP_5155 -3.5 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0735 -3.4 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_5348 -3.4 -9.4 Transcriptional regulator, LysR family compare
PP_1233 -3.3 -9.0 sulfurtransferase compare
PP_5303 -3.2 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5095 -3.2 -9.6 pyrroline-5-carboxylate reductase compare
PP_2328 -3.0 -7.8 Phosphoadenosine phosphosulfate reductase compare
PP_0420 -3.0 -8.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1362 -2.9 -3.9 pyruvate kinase II compare
PP_2000 -2.9 -2.8 amidophosphoribosyl transferase compare
PP_0417 -2.8 -17.9 Anthranilate synthase component 1 compare
PP_5014 -2.6 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_2370 -2.6 -3.1 conserved protein of unknown function compare
PP_5104 -2.6 -8.8 thiazole synthase compare
PP_1664 -2.6 -5.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_3105 -2.6 -2.0 conserved membrane protein of unknown function compare
PP_0164 -2.5 -11.4 conserved protein of unknown function compare
PP_2168 -2.4 -11.6 Transaldolase compare
PP_4782 -2.4 -6.4 Phosphomethylpyrimidine kinase compare
PP_4699 -2.3 -6.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5350 -2.3 -4.1 Transcriptional regulator, RpiR family compare
PP_0362 -2.3 -10.3 Biotin synthase compare
PP_1215 -2.2 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1022 -2.2 -4.9 glucose 6-phosphate-1-dehydrogenase compare
PP_3821 -2.2 -12.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0856 -2.2 -4.1 conserved lipoprotein of unknown function compare
PP_0276 -2.1 -1.1 Transcriptional regulator, Cro/CI family compare
PP_1025 -2.1 -5.8 2-isopropylmalate synthase compare
PP_4922 -2.1 -12.2 Phosphomethylpyrimidine synthase compare
PP_1656 -2.1 -6.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4364 -2.1 -5.2 putative Anti-sigma F factor antagonist compare
PP_3110 -2.0 -2.6 protein of unknown function compare
PP_5054 -2.0 -2.3 glutaredoxin 3 compare
PP_3241 -2.0 -1.0 conserved exported protein of unknown function compare
PP_0122 -1.9 -3.4 conserved exported protein of unknown function compare
PP_0291 -1.9 -2.0 conserved protein of unknown function compare
PP_4004 -1.9 -4.9 DNA translocase FtsK compare
PP_2442 -1.9 -2.1 conserved protein of unknown function, DUF480 family compare
PP_5076 -1.9 -13.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_1428 -1.8 -3.6 Sigma factor AlgU negative regulatory protein compare
PP_2388 -1.8 -5.6 Transporter, LysE family compare
PP_5075 -1.8 -9.2 glutamate synthase (NADPH) beta subunit compare
PP_0065 -1.7 -3.0 NAD-binding component of TrK potassium transporter compare
PP_5456 -1.7 -0.9 conserved protein of unknown function compare
PP_2087 -1.7 -2.5 CmpX protein compare
PP_4993 -1.7 -4.0 Glutathione synthetase compare
PP_2414 -1.7 -1.0 conserved exported protein of unknown function compare
PP_1309 -1.7 -4.7 conserved exported protein of unknown function compare
PP_0086 -1.6 -2.3 conserved protein of unknown function compare
PP_2348 -1.6 -4.9 Sensor histidine kinase compare
PP_3938 -1.6 -1.5 conserved protein of unknown function compare
PP_1493 -1.6 -4.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3378 -1.6 -1.3 putative 2-ketogluconokinase compare
PP_4507 -1.6 -10.5 potassium transporter compare
PP_1128 -1.5 -2.8 OmpA family protein compare
PP_2433 -1.5 -1.5 conserved protein of unknown function compare
PP_4073 -1.5 -2.7 conserved exported protein of unknown function compare
PP_5508 -1.5 -0.9 conserved protein of unknown function compare
PP_4964 -1.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1186 -1.4 -2.4 two component system DNA-binding transcriptional dual regulator compare
PP_3637 -1.4 -3.5 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0127 -1.4 -6.2 Thiol:disulfide interchange protein compare
PP_1387 -1.4 -5.0 Probable HTH-type transcriptional regulator TtgR compare
PP_4943 -1.4 -1.8 putative Glycosyl transferase compare
PP_4500 -1.3 -3.3 TrpH family protein compare
PP_4910 -1.3 -1.3 conserved protein of unknown function compare
PP_2439 -1.3 -1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4098 -1.3 -0.8 UvrABC system protein C compare
PP_1269 -1.3 -0.8 Universal stress protein family compare
PP_5309 -1.3 -0.9 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1655 -1.3 -2.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5216 -1.2 -3.3 exopolyphosphatase compare
PP_4121 -1.2 -1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_4227 -1.2 -1.4 conserved protein of unknown function compare
PP_4130 -1.2 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4546 -1.2 -3.1 ATP-dependent helicase HrpA compare
PP_4124 -1.2 -1.6 NADH-quinone oxidoreductase subunit G compare
PP_2302 -1.2 -4.7 DNA-binding, ATP-dependent protease compare
PP_2714 -1.2 -5.6 Sensor histidine kinase compare
PP_4880 -1.2 -4.2 exoribonuclease R compare
PP_2737 -1.2 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4940 -1.2 -5.6 Putative glycosyltransferase compare
PP_3035 -1.2 -1.8 conserved protein of unknown function compare
PP_1629 -1.2 -3.4 Protein RecA compare
PP_1348 -1.1 -3.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3443 -1.1 -7.2 putative glyceraldehyde-3-phosphate dehydrogenase compare
PP_1145 -1.1 -6.9 RNA polymerase-associated protein RapA compare
PP_1217 -1.1 -2.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0274 -1.1 -0.7 putative transcriptional regulator containing HTH domain compare
PP_2402 -1.1 -1.3 putative Sensor histidine kinase compare
PP_1783 -1.1 -1.0 dTDP-glucose pyrophosphorylase compare
PP_2029 -1.1 -1.5 von Willebrand factor type A domain protein compare
PP_1534 -1.1 -2.5 conserved protein of unknown function compare
PP_4213 -1.0 -1.7 putative dipeptidase compare
PP_1734 -1.0 -0.7 Probable septum site-determining protein MinC compare
PP_4196 -1.0 -1.0 conserved exported protein of unknown function compare
PP_1216 -1.0 -0.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1774 -1.0 -1.2 conserved exported protein of unknown function compare
PP_0250 -1.0 -0.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_3808 -1.0 -1.1 Antibiotic synthesis protein MbtH compare
PP_4515 -1.0 -3.6 Transcriptional regulator, MarR family compare
PP_0593 -1.0 -0.6 putative ribosome-binding factor compare
PP_4977 -1.0 -6.5 5,10-methylenetetrahydrofolate reductase compare
PP_3935 -1.0 -1.7 conserved protein of unknown function compare
PP_4693 -1.0 -2.2 RNA polymerase-binding transcription factor DksA compare
PP_1654 -1.0 -2.6 cysteine synthase B compare
PP_2403 -0.9 -0.8 Chemotaxis protein CheY compare
PP_3649 -0.9 -1.2 Transcriptional regulator, GntR family compare
PP_1468 -0.9 -1.8 Tyrosine recombinase XerD compare
PP_3926 -0.9 -1.2 short-chain dehydrogenase compare
PP_5198 -0.9 -2.1 conserved protein of unknown function compare
PP_0152 -0.9 -1.2 conserved exported protein of unknown function compare
PP_0001 -0.9 -0.8 probable chromosome-partitioning protein compare
PP_3505 -0.9 -1.7 conserved protein of unknown function compare
PP_4131 -0.9 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_5204 -0.9 -2.5 conserved protein of unknown function compare
PP_3551 -0.9 -0.9 DNA-binding response regulator, LuxR family compare
PP_5240 -0.9 -2.0 Response regulator compare
PP_4892 -0.9 -4.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2429 -0.9 -1.6 putative Membrane protein compare
PP_3898 -0.9 -1.5 conserved protein of unknown function compare
PP_0007 -0.9 -1.8 conserved hypothetical protein compare
PP_1097 -0.9 -1.4 Methionine--tRNA ligase compare
PP_3248 -0.9 -0.6 Dyp-type peroxidase family protein compare
PP_5227 -0.9 -4.4 diaminopimelate decarboxylase compare
PP_1110 -0.9 -1.5 serine acetyltransferase compare
PP_1742 -0.8 -2.2 conserved inner membrane protein of unknown function compare
PP_1111 -0.8 -4.0 putative Synthetase compare
PP_2044 -0.8 -1.2 conserved inner membrane protein of unknown function compare
PP_5028 -0.8 -2.3 proline iminopeptidase compare
PP_1994 -0.8 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_4005 -0.8 -2.3 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4980 -0.8 -4.9 ATP-dependent RNA helicase compare
PP_0401 -0.8 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_3506 -0.8 -3.0 Magnesium chelatase, subunit ChII compare
PP_0435 -0.8 -7.3 Peptidase, M23/M37 family compare
PP_1109 -0.8 -5.7 Transcriptional regulator, GntR family compare
PP_0855 -0.8 -1.7 conserved protein of unknown function compare
PP_5022 -0.8 -1.0 Glutamine transport ATP-binding protein GlnQ compare
PP_4799 -0.8 -0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0989 -0.8 -3.5 glycine cleavage system H protein 1 compare
PP_1048 -0.8 -1.1 putative protein secretion protein for export compare
PP_1912 -0.8 -3.7 Phosphate acyltransferase compare
PP_5393 -0.8 -0.7 putative metal-binding chaperone compare
PP_4726 -0.8 -1.7 Chaperone protein DnaJ compare
PP_4642 -0.8 -0.5 Cyclic diguanosine monophosphate-binding protein compare
PP_2337 -0.8 -1.3 aconitate isomerase compare
PP_1122 -0.8 -1.0 OmpA family protein compare
PP_2107 -0.8 -1.2 conserved protein of unknown function compare
PP_0512 -0.8 -2.1 hypothetical protein compare
PP_2794 -0.8 -2.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4094 -0.7 -1.1 conserved protein of unknown function compare
PP_0677 -0.7 -1.8 putative Lipoprotein compare
PP_2520 -0.7 -2.1 conserved protein of unknown function compare
PP_5712 -0.7 -3.4 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For stress Lithium chloride in Pseudomonas putida KT2440

For stress Lithium chloride across organisms