Experiment set39IT038 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Sodium Fluoroacetate 80 mM

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.7 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -7.1 -4.9 dihydroorotase-like protein compare
PP_4724 -7.1 -15.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -6.9 -28.6 Carbamoyl-phosphate synthase large chain compare
PP_3511 -6.6 -6.5 Branched-chain-amino-acid aminotransferase compare
PP_0787 -6.6 -4.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2327 -6.4 -4.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1985 -6.3 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.2 -4.3 3-isopropylmalate dehydrogenase compare
PP_1079 -6.2 -6.0 Ornithine carbamoyltransferase compare
PP_0691 -6.2 -15.4 Glutamate 5-kinase compare
PP_4678 -6.1 -7.3 Ketol-acid reductoisomerase compare
PP_1088 -6.1 -9.4 Argininosuccinate synthase compare
PP_1995 -6.1 -7.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -6.0 -9.3 homoserine O-acetyltransferase compare
PP_4909 -6.0 -7.2 phosphoserine phosphatase compare
PP_0422 -6.0 -5.6 Indole-3-glycerol phosphate synthase compare
PP_5098 -6.0 -4.1 methionine biosynthesis protein MetW compare
PP_2001 -6.0 -8.2 O-succinylhomoserine sulfhydrylase compare
PP_4001 -5.9 -9.9 Putative fluoride ion transporter CrcB compare
PP_4680 -5.9 -5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0354 -5.9 -14.3 CBS domain protein compare
PP_0966 -5.7 -10.9 Histidinol dehydrogenase compare
PP_0967 -5.6 -11.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1025 -5.5 -12.4 2-isopropylmalate synthase compare
PP_0417 -5.5 -20.8 Anthranilate synthase component 1 compare
PP_2168 -5.3 -8.9 Transaldolase compare
PP_5185 -5.3 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -5.3 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0290 -5.2 -5.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0420 -5.1 -13.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5104 -5.1 -12.2 thiazole synthase compare
PP_5015 -5.0 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3417 -5.0 -3.5 D-gluconate transporter compare
PP_1986 -5.0 -3.4 3-isopropylmalate dehydratase small subunit compare
PP_4700 -4.9 -5.9 pantothenate synthetase compare
PP_4099 -4.9 -34.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3999 -4.8 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1650 -4.8 -21.3 Sensor protein GacS compare
PP_1231 -4.8 -8.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1233 -4.8 -10.6 sulfurtransferase compare
PP_4696 -4.7 -3.3 Nitrogen regulation protein NR(I) compare
PP_0184 -4.7 -3.3 Argininosuccinate lyase compare
PP_4890 -4.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_5303 -4.6 -5.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2371 -4.6 -3.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5289 -4.6 -5.4 Acetylglutamate kinase compare
PP_5347 -4.5 -15.3 pyruvate carboxylase subunit A compare
PP_0353 -4.4 -12.8 Exonuclease compare
PP_0421 -4.4 -7.4 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.4 -3.1 tryptophan synthase alpha chain compare
PP_2545 -4.4 -7.8 trans-aconitate methyltransferase compare
PP_0083 -4.3 -3.0 tryptophan synthase beta chain compare
PP_4679 -4.3 -5.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -4.3 -11.8 pyruvate carboxylase subunit B compare
PP_0378 -4.2 -13.2 Pyrroloquinoline-quinone synthase compare
PP_5128 -4.2 -7.1 Dihydroxy-acid dehydratase compare
PP_0339 -4.1 -2.9 Pyruvate dehydrogenase E1 component compare
PP_0376 -4.0 -15.1 Coenzyme PQQ synthesis protein E compare
PP_5095 -4.0 -10.1 pyrroline-5-carboxylate reductase compare
PP_0289 -3.8 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4782 -3.8 -7.5 Phosphomethylpyrimidine kinase compare
PP_1623 -3.8 -12.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_5014 -3.7 -2.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_4922 -3.6 -15.9 Phosphomethylpyrimidine synthase compare
PP_1493 -3.6 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0735 -3.5 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1362 -3.5 -2.4 pyruvate kinase II compare
PP_1444 -3.5 -14.8 quinoprotein glucose dehydrogenase compare
PP_0292 -3.5 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5155 -3.4 -4.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0379 -3.3 -7.1 Coenzyme PQQ synthesis protein B compare
PP_2000 -3.3 -2.3 amidophosphoribosyl transferase compare
PP_2414 -3.3 -4.5 conserved exported protein of unknown function compare
PP_2433 -3.3 -2.4 conserved protein of unknown function compare
PP_0291 -3.3 -3.6 conserved protein of unknown function compare
PP_5348 -3.2 -10.2 Transcriptional regulator, LysR family compare
PP_2337 -3.1 -2.1 aconitate isomerase compare
PP_1011 -3.1 -11.5 glucokinase compare
PP_2087 -3.1 -2.9 CmpX protein compare
PP_5054 -3.0 -2.9 glutaredoxin 3 compare
PP_1656 -3.0 -7.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_4776 -2.8 -11.4 AsnC family transcriptional regulator compare
PP_4364 -2.8 -4.9 putative Anti-sigma F factor antagonist compare
PP_1428 -2.7 -3.6 Sigma factor AlgU negative regulatory protein compare
PP_2029 -2.6 -2.5 von Willebrand factor type A domain protein compare
PP_5706 -2.5 -3.8 Sec translocation complex - SecG subunit compare
PP_0362 -2.5 -11.9 Biotin synthase compare
PP_2302 -2.4 -6.2 DNA-binding, ATP-dependent protease compare
PP_1017 -2.4 -7.8 mannose/glucose ABC transporter, permease protein compare
PP_3064 -2.4 -2.2 Phage tail protein compare
PP_1012 -2.4 -7.6 DNA-binding response regulator compare
PP_1664 -2.4 -5.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1655 -2.4 -6.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4268 -2.3 -1.3 nucleoid-associated broad specificity regulator compare
PP_5350 -2.3 -5.7 Transcriptional regulator, RpiR family compare
PP_0274 -2.3 -1.1 putative transcriptional regulator containing HTH domain compare
PP_5145 -2.3 -16.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5610 -2.3 -1.8 protein of unknown function compare
PP_1013 -2.2 -6.9 Sensor histidine kinase compare
PP_0127 -2.2 -7.5 Thiol:disulfide interchange protein compare
PP_1015 -2.2 -8.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_0948 -2.1 -3.4 Phosphocarrier protein HPr compare
PP_2144 -2.1 -3.3 Transcriptional regulator, TetR family compare
PP_1898 -2.1 -4.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4994 -2.1 -6.7 conserved protein of unknown function compare
PP_5338 -2.0 -2.0 aspartate ammonia-lyase compare
PP_1348 -2.0 -6.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3790 -2.0 -12.8 diaminopimelate epimerase compare
PP_0380 -2.0 -3.9 Coenzyme PQQ synthesis protein A compare
PP_1022 -2.0 -4.1 glucose 6-phosphate-1-dehydrogenase compare
PP_5090 -2.0 -2.2 putative cell division protein compare
PP_1016 -2.0 -8.4 mannose/glucose ABC transporter, permease protein compare
PP_4975 -2.0 -5.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_0250 -2.0 -2.2 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0513 -1.9 -1.2 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0809 -1.9 -8.5 disulfide bond formation protein B compare
PP_0856 -1.9 -4.0 conserved lipoprotein of unknown function compare
PP_0719 -1.9 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0949 -1.9 -8.1 putative ATP-binding protein UPF0042 compare
PP_1366 -1.9 -3.2 Transcriptional regulator MvaT, P16 subunit compare
PP_4699 -1.8 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2336 -1.8 -2.9 aconitate hydratase 1 compare
PP_2334 -1.8 -6.0 2-methylisocitrate lyase compare
PP_5227 -1.8 -7.3 diaminopimelate decarboxylase compare
PP_0381 -1.8 -8.1 Coenzyme PQQ synthesis protein F compare
PP_2328 -1.8 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_1216 -1.7 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4902 -1.7 -3.5 Oligoribonuclease compare
PP_0377 -1.7 -1.7 coenzyme PQQ synthesis protein D compare
PP_2439 -1.6 -1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_5047 -1.6 -3.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4951 -1.6 -7.1 Drug resistance transporter, EmrB/QacA family compare
PP_0164 -1.6 -7.9 conserved protein of unknown function compare
PP_1672 -1.6 -5.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4122 -1.6 -2.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0401 -1.6 -1.1 Ribosomal RNA small subunit methyltransferase A compare
PP_4910 -1.6 -1.5 conserved protein of unknown function compare
PP_3105 -1.6 -1.8 conserved membrane protein of unknown function compare
PP_0191 -1.6 -1.7 Transcriptional regulatory protein AlgQ compare
PP_4482 -1.5 -4.2 Transcriptional regulator, AraC family compare
PP_5393 -1.5 -1.2 putative metal-binding chaperone compare
PP_3649 -1.5 -1.0 Transcriptional regulator, GntR family compare
PP_0852 -1.5 -2.5 Transcriptional regulator, Cro/CI family compare
PP_2633 -1.5 -1.3 conserved protein of unknown function compare
PP_3098 -1.5 -1.6 conserved protein of unknown function compare
PP_4515 -1.5 -4.3 Transcriptional regulator, MarR family compare
PP_3637 -1.5 -3.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3506 -1.5 -3.7 Magnesium chelatase, subunit ChII compare
PP_1018 -1.5 -6.0 mannose/glucose ABC transporter - ATP binding subunit compare
PP_1678 -1.5 -4.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1004 -1.5 -2.5 conserved protein of unknown function compare
PP_5309 -1.5 -1.0 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4130 -1.5 -4.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2402 -1.5 -1.9 putative Sensor histidine kinase compare
PP_1217 -1.4 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2348 -1.4 -3.3 Sensor histidine kinase compare
PP_4045 -1.4 -1.5 conserved protein of unknown function compare
PP_4989 -1.4 -2.3 Protein PilJ compare
PP_4977 -1.4 -8.1 5,10-methylenetetrahydrofolate reductase compare
PP_0834 -1.4 -1.7 Sec translocation complex subunit YajC compare
PP_1676 -1.4 -6.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0880 -1.4 -3.4 dipeptide ABC transporter - putative membrane subunit compare
PP_4098 -1.4 -0.9 UvrABC system protein C compare
PP_1198 -1.4 -2.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1009 -1.4 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4124 -1.4 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_4734 -1.4 -6.8 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4943 -1.4 -2.0 putative Glycosyl transferase compare
PP_3508 -1.4 -4.2 Protein CobW compare
PP_2375 -1.4 -10.1 cobalamin-dependent methionine synthase compare
PP_4826 -1.4 -5.4 Precorrin-3B C17-methyltransferase compare
PP_4695 -1.4 -5.9 Sensory box histidine kinase compare
PP_2568 -1.4 -1.0 Ring-cleaving dioxygenase compare
PP_3821 -1.4 -8.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4832 -1.4 -5.1 Precorrin-6x reductase compare
PP_2333 -1.4 -4.4 GntR family transcriptional regulator compare
PP_4131 -1.3 -4.1 NADH-quinone oxidoreductase subunit N compare
PP_1654 -1.3 -3.2 cysteine synthase B compare
PP_4804 -1.3 -4.1 RlpA-like lipoprotein compare
PP_1677 -1.3 -4.3 Adenosyl-cobyric acid synthase compare
PP_2499 -1.3 -0.9 conserved protein of unknown function compare
PP_2370 -1.3 -1.4 conserved protein of unknown function compare
PP_4879 -1.3 -2.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_3507 -1.3 -8.9 Aerobic cobaltochelatase subunit CobN compare
PP_1764 -1.3 -5.0 Phosphoglycolate phosphatase 2 compare
PP_3505 -1.3 -1.8 conserved protein of unknown function compare
PP_1553 -1.3 -1.9 conserved protein of unknown function compare
PP_4827 -1.2 -7.9 Precorrin-2 C(20)-methyltransferase compare
PP_1912 -1.2 -5.0 Phosphate acyltransferase compare
PP_4848 -1.2 -3.0 Curved DNA-binding protein compare
PP_4223 -1.2 -1.6 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4940 -1.2 -4.8 Putative glycosyltransferase compare
PP_2088 -1.2 -3.7 RNA polymerase sigma factor SigX compare
PP_4984 -1.2 -7.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1164 -1.2 -2.1 Transcriptional regulator, LysR family compare
PP_1673 -1.2 -4.3 cobyrinate a,c-diamide synthase compare
PP_0366 -1.2 -4.4 dethiobiotin synthetase compare
PP_1681 -1.2 -6.8 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_0122 -1.2 -2.3 conserved exported protein of unknown function compare


Specific Phenotypes

For 21 genes in this experiment

For stress Sodium Fluoroacetate in Pseudomonas putida KT2440

For stress Sodium Fluoroacetate across organisms