Experiment set39IT037 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Sodium Fluoroacetate 80 mM

200 most important genes:

  gene name fitness t score description  
PP_4724 -7.6 -17.5 Carbamoyl-phosphate synthase small chain compare
PP_4999 -7.3 -5.0 dihydroorotase-like protein compare
PP_3511 -7.0 -4.9 Branched-chain-amino-acid aminotransferase compare
PP_4723 -6.8 -30.2 Carbamoyl-phosphate synthase large chain compare
PP_1079 -6.7 -4.6 Ornithine carbamoyltransferase compare
PP_2327 -6.6 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1985 -6.5 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.4 -4.4 3-isopropylmalate dehydrogenase compare
PP_4678 -6.4 -7.6 Ketol-acid reductoisomerase compare
PP_0965 -6.3 -10.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5098 -6.2 -4.3 methionine biosynthesis protein MetW compare
PP_0691 -6.2 -17.5 Glutamate 5-kinase compare
PP_5097 -6.1 -11.0 homoserine O-acetyltransferase compare
PP_4890 -6.1 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_1088 -6.1 -11.7 Argininosuccinate synthase compare
PP_0293 -6.1 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2001 -6.0 -9.2 O-succinylhomoserine sulfhydrylase compare
PP_1025 -6.0 -10.8 2-isopropylmalate synthase compare
PP_0354 -6.0 -15.0 CBS domain protein compare
PP_5015 -5.9 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4909 -5.9 -9.0 phosphoserine phosphatase compare
PP_4700 -5.8 -4.0 pantothenate synthetase compare
PP_1995 -5.7 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2168 -5.7 -8.7 Transaldolase compare
PP_5289 -5.7 -3.9 Acetylglutamate kinase compare
PP_5185 -5.7 -3.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0787 -5.7 -6.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -5.7 -8.0 Indole-3-glycerol phosphate synthase compare
PP_0417 -5.5 -19.9 Anthranilate synthase component 1 compare
PP_4001 -5.5 -10.2 Putative fluoride ion transporter CrcB compare
PP_4680 -5.5 -11.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.4 -13.1 Histidinol dehydrogenase compare
PP_0967 -5.4 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5095 -5.3 -6.6 pyrroline-5-carboxylate reductase compare
PP_0290 -5.3 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -5.2 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_4679 -5.1 -5.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0420 -5.0 -13.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0289 -5.0 -11.6 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -4.9 -3.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0184 -4.9 -3.4 Argininosuccinate lyase compare
PP_1231 -4.8 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5303 -4.8 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4099 -4.8 -37.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5346 -4.8 -16.1 pyruvate carboxylase subunit B compare
PP_2371 -4.7 -3.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1650 -4.6 -22.1 Sensor protein GacS compare
PP_5347 -4.6 -16.7 pyruvate carboxylase subunit A compare
PP_5128 -4.6 -7.9 Dihydroxy-acid dehydratase compare
PP_0353 -4.6 -13.1 Exonuclease compare
PP_0083 -4.5 -3.1 tryptophan synthase beta chain compare
PP_3417 -4.5 -5.3 D-gluconate transporter compare
PP_5104 -4.4 -11.6 thiazole synthase compare
PP_0082 -4.3 -4.2 tryptophan synthase alpha chain compare
PP_0378 -4.2 -14.2 Pyrroloquinoline-quinone synthase compare
PP_0379 -4.1 -12.0 Coenzyme PQQ synthesis protein B compare
PP_0421 -4.1 -7.6 Anthranilate phosphoribosyltransferase compare
PP_5350 -4.0 -6.7 Transcriptional regulator, RpiR family compare
PP_1233 -4.0 -9.0 sulfurtransferase compare
PP_1444 -4.0 -17.0 quinoprotein glucose dehydrogenase compare
PP_4696 -3.9 -7.0 Nitrogen regulation protein NR(I) compare
PP_0339 -3.9 -3.8 Pyruvate dehydrogenase E1 component compare
PP_0376 -3.8 -12.1 Coenzyme PQQ synthesis protein E compare
PP_0735 -3.7 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1362 -3.6 -3.5 pyruvate kinase II compare
PP_1623 -3.5 -8.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_4782 -3.5 -6.4 Phosphomethylpyrimidine kinase compare
PP_5155 -3.5 -3.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4922 -3.4 -13.5 Phosphomethylpyrimidine synthase compare
PP_0292 -3.3 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2337 -3.3 -2.2 aconitate isomerase compare
PP_2370 -3.2 -3.0 conserved protein of unknown function compare
PP_1011 -3.0 -10.6 glucokinase compare
PP_5348 -3.0 -9.9 Transcriptional regulator, LysR family compare
PP_5014 -3.0 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2302 -3.0 -6.6 DNA-binding, ATP-dependent protease compare
PP_2545 -3.0 -7.1 trans-aconitate methyltransferase compare
PP_t12 -2.9 -0.9 tRNA-Thr compare
PP_0377 -2.8 -1.5 coenzyme PQQ synthesis protein D compare
PP_1656 -2.7 -6.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1493 -2.7 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1348 -2.7 -4.8 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0362 -2.6 -12.1 Biotin synthase compare
PP_2414 -2.4 -4.6 conserved exported protein of unknown function compare
PP_4910 -2.4 -1.6 conserved protein of unknown function compare
PP_3105 -2.4 -2.5 conserved membrane protein of unknown function compare
PP_4342 -2.4 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_0856 -2.4 -4.7 conserved lipoprotein of unknown function compare
PP_4776 -2.4 -11.9 AsnC family transcriptional regulator compare
PP_1215 -2.3 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_5145 -2.3 -16.2 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1022 -2.3 -5.8 glucose 6-phosphate-1-dehydrogenase compare
PP_1655 -2.3 -5.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_2348 -2.3 -4.5 Sensor histidine kinase compare
PP_0948 -2.3 -3.7 Phosphocarrier protein HPr compare
PP_2144 -2.3 -3.9 Transcriptional regulator, TetR family compare
PP_1013 -2.2 -8.9 Sensor histidine kinase compare
PP_4994 -2.2 -6.6 conserved protein of unknown function compare
PP_1016 -2.2 -9.3 mannose/glucose ABC transporter, permease protein compare
PP_1898 -2.2 -5.6 MotA/TolQ/ExbB proton channel family protein compare
PP_1012 -2.1 -6.3 DNA-binding response regulator compare
PP_5706 -2.1 -3.1 Sec translocation complex - SecG subunit compare
PP_4975 -2.1 -5.9 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1017 -2.1 -7.9 mannose/glucose ABC transporter, permease protein compare
PP_0719 -2.0 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3506 -2.0 -4.8 Magnesium chelatase, subunit ChII compare
PP_3790 -2.0 -9.4 diaminopimelate epimerase compare
PP_4364 -2.0 -5.2 putative Anti-sigma F factor antagonist compare
PP_5227 -2.0 -8.7 diaminopimelate decarboxylase compare
PP_0949 -2.0 -8.3 putative ATP-binding protein UPF0042 compare
PP_5232 -1.9 -1.4 conserved protein of unknown function compare
PP_0380 -1.9 -5.3 Coenzyme PQQ synthesis protein A compare
PP_2328 -1.8 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_4122 -1.8 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1015 -1.8 -8.2 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_1216 -1.8 -1.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5610 -1.8 -1.7 protein of unknown function compare
PP_2000 -1.8 -2.9 amidophosphoribosyl transferase compare
PP_2333 -1.8 -4.0 GntR family transcriptional regulator compare
PP_1664 -1.8 -4.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_2088 -1.8 -4.3 RNA polymerase sigma factor SigX compare
PP_5047 -1.8 -4.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3821 -1.7 -9.6 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4828 -1.7 -1.5 Precorrin-8X methylmutase compare
PP_0164 -1.7 -6.2 conserved protein of unknown function compare
PP_0127 -1.7 -10.4 Thiol:disulfide interchange protein compare
PP_1018 -1.7 -6.0 mannose/glucose ABC transporter - ATP binding subunit compare
PP_3946 -1.7 -1.3 HTH-type transcriptional repressor NicR compare
PP_0888 -1.6 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_0809 -1.6 -8.8 disulfide bond formation protein B compare
PP_0381 -1.6 -6.6 Coenzyme PQQ synthesis protein F compare
PP_5309 -1.6 -1.1 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2345 -1.6 -1.5 conserved exported protein of unknown function compare
PP_1808 -1.6 -2.2 glucose-6-phosphate isomerase compare
PP_2334 -1.6 -3.6 2-methylisocitrate lyase compare
PP_4130 -1.5 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4826 -1.5 -6.1 Precorrin-3B C17-methyltransferase compare
PP_2402 -1.5 -1.8 putative Sensor histidine kinase compare
PP_3241 -1.5 -0.8 conserved exported protein of unknown function compare
PP_1654 -1.5 -3.9 cysteine synthase B compare
PP_4120 -1.5 -2.2 NADH-quinone oxidoreductase subunit B compare
PP_1912 -1.5 -4.8 Phosphate acyltransferase compare
PP_2336 -1.5 -2.7 aconitate hydratase 1 compare
PP_0291 -1.5 -1.7 conserved protein of unknown function compare
PP_4984 -1.5 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4098 -1.5 -1.0 UvrABC system protein C compare
PP_2499 -1.5 -1.1 conserved protein of unknown function compare
PP_4247 -1.5 -1.0 Exonuclease compare
PP_4699 -1.5 -4.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2375 -1.5 -9.5 cobalamin-dependent methionine synthase compare
PP_0274 -1.5 -0.8 putative transcriptional regulator containing HTH domain compare
PP_2737 -1.4 -0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1764 -1.4 -6.1 Phosphoglycolate phosphatase 2 compare
PP_3507 -1.4 -10.0 Aerobic cobaltochelatase subunit CobN compare
PP_4902 -1.4 -2.4 Oligoribonuclease compare
PP_4829 -1.4 -2.7 putative precorrin-3B synthase compare
PP_2433 -1.4 -1.3 conserved protein of unknown function compare
PP_3637 -1.4 -3.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4196 -1.4 -1.5 conserved exported protein of unknown function compare
PP_2340 -1.4 -3.4 conserved protein of unknown function compare
PP_0276 -1.4 -0.8 Transcriptional regulator, Cro/CI family compare
PP_0612 -1.4 -7.8 FAD-dependent glycine/D-amino acid oxidase compare
PP_1774 -1.3 -1.1 conserved exported protein of unknown function compare
PP_3508 -1.3 -3.7 Protein CobW compare
PP_5110 -1.3 -1.3 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4951 -1.3 -6.3 Drug resistance transporter, EmrB/QacA family compare
PP_4734 -1.3 -6.1 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0122 -1.3 -4.3 conserved exported protein of unknown function compare
PP_4124 -1.3 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_1681 -1.3 -8.7 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4126 -1.3 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_1678 -1.3 -2.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_1009 -1.3 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4004 -1.3 -4.0 DNA translocase FtsK compare
PP_3409 -1.3 -2.4 putative Cobalamin biosynthesis protein cobE compare
PP_3649 -1.3 -1.4 Transcriptional regulator, GntR family compare
PP_2650 -1.3 -1.8 putative 4-hydroxybutyrate dehydrogenase compare
PP_4977 -1.3 -6.6 5,10-methylenetetrahydrofolate reductase compare
PP_4827 -1.2 -7.9 Precorrin-2 C(20)-methyltransferase compare
PP_1415 -1.2 -3.2 putative membrane associated enzyme subunit compare
PP_1428 -1.2 -3.3 Sigma factor AlgU negative regulatory protein compare
PP_1629 -1.2 -3.8 Protein RecA compare
PP_1673 -1.2 -5.0 cobyrinate a,c-diamide synthase compare
PP_1552 -1.2 -1.6 putative Phage replication protein compare
PP_4121 -1.2 -2.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1778 -1.2 -4.7 Lipopolysaccharide ABC export system, permease protein compare
PP_4830 -1.2 -4.7 precorrin-6Y C(5,15)-methyltransferase compare
PP_5719 -1.2 -3.1 choline-responsive transcriptional repressor BetI compare
PP_3286 -1.2 -4.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_0793 -1.2 -5.1 Phosphotransferase system, fructose-specific EI/HPr/EIIA components compare
PP_2908 -1.2 -3.5 DNA-binding transcriptional repressor compare
PP_1014 -1.2 -6.0 aldose-ketose isomerase compare
PP_4695 -1.2 -4.9 Sensory box histidine kinase compare
PP_2107 -1.2 -1.8 conserved protein of unknown function compare
PP_0022 -1.2 -0.7 hypothetical protein compare
PP_0852 -1.2 -2.5 Transcriptional regulator, Cro/CI family compare
PP_1734 -1.2 -1.1 Probable septum site-determining protein MinC compare
PP_2442 -1.2 -1.3 conserved protein of unknown function, DUF480 family compare
PP_4943 -1.2 -1.9 putative Glycosyl transferase compare
PP_1568 -1.1 -0.8 conserved protein of unknown function compare


Specific Phenotypes

For 23 genes in this experiment

For stress Sodium Fluoroacetate in Pseudomonas putida KT2440

For stress Sodium Fluoroacetate across organisms