Experiment set39IT036 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

200 most important genes:

  gene name fitness t score description  
PP_4723 -9.4 -29.1 Carbamoyl-phosphate synthase large chain compare
PP_4724 -8.7 -13.1 Carbamoyl-phosphate synthase small chain compare
PP_1385 -8.3 -5.8 Probable efflux pump membrane transporter TtgB compare
PP_1384 -8.0 -9.6 Probable efflux pump outer membrane protein TtgC compare
PP_1386 -7.8 -5.4 Probable efflux pump periplasmic linker TtgA compare
PP_0293 -7.2 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.6 -4.5 dihydroorotase-like protein compare
PP_5346 -6.1 -8.4 pyruvate carboxylase subunit B compare
PP_0787 -6.1 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.1 -4.2 Indole-3-glycerol phosphate synthase compare
PP_1985 -6.0 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_1988 -5.9 -4.1 3-isopropylmalate dehydrogenase compare
PP_5348 -5.9 -8.1 Transcriptional regulator, LysR family compare
PP_4678 -5.9 -4.1 Ketol-acid reductoisomerase compare
PP_3511 -5.9 -7.0 Branched-chain-amino-acid aminotransferase compare
PP_0691 -5.8 -15.6 Glutamate 5-kinase compare
PP_0966 -5.8 -5.7 Histidinol dehydrogenase compare
PP_1995 -5.8 -5.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5097 -5.8 -5.6 homoserine O-acetyltransferase compare
PP_0417 -5.8 -8.8 Anthranilate synthase component 1 compare
PP_2001 -5.7 -7.8 O-succinylhomoserine sulfhydrylase compare
PP_0967 -5.6 -8.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -5.6 -7.7 Argininosuccinate synthase compare
PP_0965 -5.6 -8.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -5.6 -5.5 Ornithine carbamoyltransferase compare
PP_4680 -5.5 -3.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -5.4 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PP_5015 -5.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1231 -5.2 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0289 -5.1 -7.0 Imidazoleglycerol-phosphate dehydratase compare
PP_4909 -5.0 -8.4 phosphoserine phosphatase compare
PP_5098 -5.0 -6.0 methionine biosynthesis protein MetW compare
PP_5185 -5.0 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -5.0 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5289 -5.0 -3.4 Acetylglutamate kinase compare
PP_0420 -4.9 -11.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2327 -4.9 -8.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4700 -4.8 -4.7 pantothenate synthetase compare
PP_5104 -4.8 -10.2 thiazole synthase compare
PP_4679 -4.8 -3.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_5347 -4.7 -10.9 pyruvate carboxylase subunit A compare
PP_2168 -4.5 -11.0 Transaldolase compare
PP_1233 -4.5 -8.6 sulfurtransferase compare
PP_0421 -4.5 -8.9 Anthranilate phosphoribosyltransferase compare
PP_2371 -4.4 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.4 -3.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5303 -4.4 -5.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5128 -4.2 -7.9 Dihydroxy-acid dehydratase compare
PP_4696 -4.2 -2.9 Nitrogen regulation protein NR(I) compare
PP_4984 -4.2 -14.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0184 -4.2 -2.9 Argininosuccinate lyase compare
PP_0362 -4.1 -10.5 Biotin synthase compare
PP_0366 -4.1 -10.3 dethiobiotin synthetase compare
PP_2031 -4.1 -2.4 conserved protein of unknown function compare
PP_0363 -4.0 -13.9 8-amino-7-oxononanoate synthase compare
PP_0292 -4.0 -2.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -3.9 -2.7 tryptophan synthase alpha chain compare
PP_4782 -3.9 -5.9 Phosphomethylpyrimidine kinase compare
PP_0083 -3.8 -2.6 tryptophan synthase beta chain compare
PP_5155 -3.8 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1025 -3.8 -13.1 2-isopropylmalate synthase compare
PP_5095 -3.8 -6.2 pyrroline-5-carboxylate reductase compare
PP_0339 -3.7 -2.6 Pyruvate dehydrogenase E1 component compare
PP_0364 -3.6 -11.7 pimeloyl-[acp] methyl ester esterase compare
PP_5508 -3.6 -1.2 conserved protein of unknown function compare
PP_0377 -3.5 -1.6 coenzyme PQQ synthesis protein D compare
PP_0291 -3.4 -3.5 conserved protein of unknown function compare
PP_4922 -3.3 -12.9 Phosphomethylpyrimidine synthase compare
PP_0365 -3.3 -8.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1912 -3.3 -8.5 Phosphate acyltransferase compare
PP_5014 -3.2 -2.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0735 -3.2 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4699 -3.1 -5.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0593 -3.1 -1.1 putative ribosome-binding factor compare
PP_2000 -3.0 -2.1 amidophosphoribosyl transferase compare
PP_4342 -3.0 -2.1 flagellar synthesis regulator, putative ATPase compare
PP_1215 -3.0 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_0856 -2.9 -2.8 conserved lipoprotein of unknown function compare
PP_2370 -2.8 -2.6 conserved protein of unknown function compare
PP_1664 -2.7 -5.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_5350 -2.7 -5.5 Transcriptional regulator, RpiR family compare
PP_2402 -2.7 -1.8 putative Sensor histidine kinase compare
PP_2087 -2.6 -3.1 CmpX protein compare
PP_2328 -2.6 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_3474 -2.4 -2.2 putative Curli fiber protein CsgE compare
PP_3551 -2.4 -1.6 DNA-binding response regulator, LuxR family compare
PP_3790 -2.3 -10.2 diaminopimelate epimerase compare
PP_2899 -2.3 -1.5 conserved exported protein of unknown function compare
PP_1348 -2.3 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3417 -2.2 -5.9 D-gluconate transporter compare
PP_1362 -2.2 -4.4 pyruvate kinase II compare
PP_4271 -2.1 -1.0 conserved protein of unknown function compare
PP_5227 -2.1 -9.2 diaminopimelate decarboxylase compare
PP_5594 -2.0 -1.9 conserved protein of unknown function compare
PP_1038 -2.0 -1.2 conserved protein of unknown function compare
PP_4681 -2.0 -2.1 conserved protein of unknown function compare
PP_0274 -2.0 -0.9 putative transcriptional regulator containing HTH domain compare
PP_5610 -2.0 -1.6 protein of unknown function compare
PP_1022 -1.9 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_2442 -1.9 -1.8 conserved protein of unknown function, DUF480 family compare
PP_5230 -1.9 -1.8 Tyrosine recombinase XerC compare
PP_2820 -1.9 -4.8 HTH-type transcriptional regulator nfxB compare
PP_3892 -1.9 -1.1 conserved protein of unknown function compare
PP_0855 -1.9 -3.7 conserved protein of unknown function compare
PP_4684 -1.8 -8.6 conserved protein of unknown function with kinase-like domain compare
PP_4804 -1.8 -3.6 RlpA-like lipoprotein compare
PP_5248 -1.8 -0.8 putative hydrolase compare
PP_4517 -1.8 -1.7 conserved protein of unknown function compare
PP_0250 -1.7 -1.7 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0022 -1.6 -0.8 hypothetical protein compare
PP_1426 -1.6 -9.5 L-aspartate oxidase compare
PP_4296 -1.6 -1.3 conserved exported protein of unknown function compare
PP_1568 -1.6 -0.9 conserved protein of unknown function compare
PP_1237 -1.6 -0.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2378 -1.6 -3.4 Fe/S biogenesis protein NfuA compare
PP_1468 -1.6 -1.9 Tyrosine recombinase XerD compare
PP_1654 -1.5 -2.9 cysteine synthase B compare
PP_1198 -1.5 -2.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1109 -1.5 -8.7 Transcriptional regulator, GntR family compare
PP_0368 -1.5 -7.4 putative Acyl-CoA dehydrogenase compare
PP_0513 -1.5 -1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0127 -1.5 -6.0 Thiol:disulfide interchange protein compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2414 -1.5 -1.8 conserved exported protein of unknown function compare
PP_4726 -1.5 -2.2 Chaperone protein DnaJ compare
PP_1217 -1.5 -1.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5331 -1.4 -4.1 Long-chain acyl-CoA thioester hydrolase compare
PP_3481 -1.4 -1.5 conserved exported protein of unknown function compare
PP_2575 -1.4 -1.5 conserved exported protein of unknown function compare
PP_1994 -1.4 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_5317 -1.4 -2.3 Probable chorismate pyruvate-lyase compare
PP_4966 -1.4 -1.3 transcriptional regulator of methionine metabolism compare
PP_1054 -1.4 -1.4 Type II secretion pathway protein XcpZ compare
PP_0065 -1.4 -2.1 NAD-binding component of TrK potassium transporter compare
PP_1656 -1.4 -5.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_0508 -1.3 -1.6 conserved exported protein of unknown function compare
PP_2130 -1.3 -6.0 putative Soluble lytic transglycosylase conserved
PP_0888 -1.3 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4989 -1.3 -1.5 Protein PilJ compare
PP_2107 -1.3 -1.9 conserved protein of unknown function compare
PP_2336 -1.3 -2.2 aconitate hydratase 1 compare
PP_3649 -1.3 -0.9 Transcriptional regulator, GntR family compare
PP_1629 -1.2 -3.2 Protein RecA compare
PP_1742 -1.2 -2.4 conserved inner membrane protein of unknown function compare
PP_5253 -1.2 -1.9 Arylesterase compare
PP_2499 -1.2 -0.8 conserved protein of unknown function compare
PP_0809 -1.2 -5.9 disulfide bond formation protein B compare
PP_1110 -1.2 -1.6 serine acetyltransferase compare
PP_1009 -1.2 -2.7 glyceraldehyde-3-phosphate dehydrogenase compare
PP_0852 -1.2 -1.6 Transcriptional regulator, Cro/CI family compare
PP_1322 -1.2 -0.9 putative Lipoprotein compare
PP_4204 -1.2 -3.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4273 -1.2 -0.5 Transcriptional regulator, MerR family compare
PP_4094 -1.2 -1.4 conserved protein of unknown function compare
PP_2025 -1.1 -2.3 Exonuclease SbcD compare
PP_1387 -1.1 -3.2 Probable HTH-type transcriptional regulator TtgR compare
PP_4253 -1.1 -1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3237 -1.1 -2.4 Universal stress protein family compare
PP_3105 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_4130 -1.1 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4098 -1.1 -0.7 UvrABC system protein C compare
PP_1430 -1.1 -6.1 putative periplasmic serine endoprotease DegP-like compare
PP_0963 -1.1 -2.6 putative BolA family protein compare
PP_2203 -1.1 -1.8 conserved protein of unknown function compare
PP_1011 -1.1 -5.3 glucokinase compare
PP_4964 -1.1 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_2929 -1.1 -5.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1128 -1.1 -1.9 OmpA family protein compare
PP_0833 -1.1 -1.8 queuine tRNA-ribosyltransferase compare
PP_5309 -1.0 -0.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3904 -1.0 -1.3 conserved protein of unknown function compare
PP_4902 -1.0 -2.1 Oligoribonuclease compare
PP_5329 -1.0 -4.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5168 -1.0 -1.0 sulfate/thiosulfate import ATP-binding protein compare
PP_1829 -1.0 -2.4 Hydrolase, alpha/beta fold family compare
PP_0048 -1.0 -0.7 conserved protein of unknown function compare
PP_1111 -1.0 -3.3 putative Synthetase compare
PP_0381 -1.0 -4.2 Coenzyme PQQ synthesis protein F compare
PP_1691 -1.0 -2.7 conserved protein of unknown function compare
PP_5571 -1.0 -0.8 conserved protein of unknown function compare
PP_4507 -1.0 -6.2 potassium transporter compare
PP_3789 -1.0 -4.3 putative Efflux transporter compare
PP_5203 -1.0 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_4828 -1.0 -0.7 Precorrin-8X methylmutase compare
PP_2302 -1.0 -3.5 DNA-binding, ATP-dependent protease compare
PP_2044 -1.0 -1.1 conserved inner membrane protein of unknown function compare
PP_0393 -1.0 -0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2136 -1.0 -3.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3048 -0.9 -1.4 conserved protein of unknown function compare
PP_5328 -0.9 -4.2 putative phosphate transport system permease protein compare
PP_2110 -0.9 -1.6 putative ribosomal large subunit pseudouridine synthase compare
PP_5705 -0.9 -0.9 protein of unknown function compare
PP_4546 -0.9 -2.5 ATP-dependent helicase HrpA compare
PP_2132 -0.9 -2.0 Universal stress protein compare
PP_4693 -0.9 -1.8 RNA polymerase-binding transcription factor DksA compare
PP_1366 -0.9 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_5SB -0.9 -1.3 5S ribosomal RNA compare
PP_4961 -0.9 -1.1 putative Lipoprotein compare
PP_4009 -0.9 -3.0 ATP-dependent Clp protease adapter protein ClpS compare


Specific Phenotypes

For 2 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas putida KT2440

For stress Carbenicillin disodium salt across organisms