Experiment set39IT036 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +1.4 5.1 Phosphocarrier protein HPr compare
PP_1445 +1.3 6.8 carbohydrate-selective porin compare
PP_1293 +1.3 1.8 molybdopterin synthase small subunit compare
PP_4847 +1.1 2.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_4268 +1.1 1.6 nucleoid-associated broad specificity regulator compare
PP_4340 +1.1 3.4 response regulator for chemotactic signal transduction compare
PP_2029 +1.1 2.1 von Willebrand factor type A domain protein compare
PP_1513 +1.1 2.2 Ribosomal RNA small subunit methyltransferase J compare
PP_3580 +1.1 3.1 conserved protein of unknown function compare
PP_0232 +1.0 1.0 ATP-binding taurine transporter subunit compare
PP_3829 +1.0 4.5 Molybdenum transport system permease protein ModB compare
PP_0306 +1.0 2.8 conserved protein of unknown function compare
PP_4099 +1.0 8.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +1.0 9.4 Sensor protein GacS compare
PP_2889 +1.0 5.5 putative Transmembrane regulator PrtR compare
PP_4789 +1.0 2.7 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5145 +1.0 8.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5528 +1.0 1.0 conserved protein of unknown function compare
PP_5735 +1.0 2.3 conserved hypothetical protein compare
PP_5017 +0.9 1.3 Sec-independent protein translocase protein TatB compare
PP_4768 +0.9 2.0 Exonuclease compare
PP_1757 +0.9 2.4 DNA-binding transcriptional dual regulator compare
PP_5658 +0.9 2.5 protein of unknown function compare
PP_1466 +0.9 2.1 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2857 +0.9 2.0 conserved exported protein of unknown function compare
PP_4793 +0.8 1.7 conserved protein of unknown function compare
PP_4171 +0.8 7.0 conserved exported protein of unknown function compare
PP_5083 +0.8 2.7 putative Type IV pili biogenesis protein PilM compare
PP_5495 +0.8 1.7 protein of unknown function compare
PP_5241 +0.8 1.1 DNA-binding response regulator, LuxR family compare
PP_2640 +0.8 2.5 Acetyltransferase, GNAT family compare
PP_2474 +0.8 1.4 Glutathione S-transferase family protein compare
PP_3280 +0.8 2.6 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase compare
PP_5022 +0.8 1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_5000 +0.8 1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_5582 +0.8 0.9 conserved protein of unknown function compare
PP_0345 +0.8 2.9 putative Heptose kinase WapP compare
PP_5609 +0.8 1.1 conserved protein of unknown function compare
PP_1845 +0.8 1.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_2070 +0.8 1.8 Transcriptional regulator, AraC family compare
PP_2655 +0.8 1.5 conserved protein of unknown function compare
PP_5008 +0.7 1.1 Poly granule-associated protein compare
PP_3810 +0.7 1.4 conserved protein of unknown function compare
PP_2332 +0.7 3.0 conserved exported protein of unknown function compare
PP_2903 +0.7 1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0627 +0.7 2.0 conserved protein of unknown function compare
PP_5053 +0.7 3.1 Protein-export protein SecB compare
PP_1113 +0.7 4.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1328 +0.7 1.1 Protein MraZ compare
PP_0001 +0.7 0.9 probable chromosome-partitioning protein compare
PP_4073 +0.7 1.1 conserved exported protein of unknown function compare
PP_4707 +0.7 1.9 OsmY-related protein compare
PP_0891 +0.7 1.9 conserved exported protein of unknown function compare
PP_5659 +0.7 1.7 protein of unknown function compare
PP_2668 +0.7 1.2 ABC efflux transporter, ATP-binding protein compare
PP_4515 +0.7 2.8 Transcriptional regulator, MarR family compare
PP_1410 +0.7 1.0 conserved protein of unknown function compare
PP_3874 +0.7 1.0 conserved protein of unknown function compare
PP_2999 +0.7 0.5 Glyoxalase family protein compare
PP_5051 +0.7 1.0 conserved protein of unknown function compare
PP_0899 +0.6 3.5 putative Ferredoxin reductase compare
PP_2633 +0.6 0.8 conserved protein of unknown function compare
PP_3971 +0.6 0.7 conserved protein of unknown function compare
PP_0789 +0.6 3.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2305 +0.6 3.3 conserved protein of unknown function compare
PP_2581 +0.6 0.8 conserved protein of unknown function compare
PP_1176 +0.6 1.6 conserved protein of unknown function compare
PP_4982 +0.6 2.0 putative cytochrome b561, iron-regulated compare
PP_4601 +0.6 2.3 Transcriptional regulator, LysR family compare
PP_4874 +0.6 0.7 50S ribosomal protein L9 compare
PP_4941 +0.6 4.0 conserved exported protein of unknown function compare
PP_5604 +0.6 1.4 putative subtilisin-like serine protease compare
PP_2215 +0.6 3.2 acetyl-CoA acetyltransferase compare
PP_1632 +0.6 1.2 conserved protein of unknown function compare
PP_4531 +0.6 2.3 conserved exported protein of unknown function compare
PP_1096 +0.6 2.4 putative electron transport complex protein compare
PP_0960 +0.6 2.7 phospholipid ABC transporter binding protein compare
PP_5176 +0.6 1.2 conserved protein of unknown function compare
PP_5025 +0.6 3.8 Glucans biosynthesis glucosyltransferase H compare
PP_t29 +0.6 0.7 tRNA-Ala compare
PP_3840 +0.6 1.2 conserved protein of unknown function compare
PP_0881 +0.6 2.3 dipeptide ABC transporter - putative membrane subunit compare
PP_5519 +0.6 1.4 conserved protein of unknown function of phage origin compare
PP_5588 +0.6 2.7 conserved protein of unknown function compare
PP_1020 +0.6 1.1 putative glucose-6-phosphate 1-epimerase compare
PP_2313 +0.6 1.6 conserved membrane protein of unknown function compare
PP_0565 +0.6 1.9 putative enzyme compare
PP_2725 +0.6 1.6 Protease PfpI compare
PP_4200 +0.6 3.3 conserved exported protein of unknown function compare
PP_0827 +0.6 1.8 putative phosphonate transport system permease protein PtxC compare
PP_2142 +0.6 1.1 Cell division inhibitor SulA compare
PP_4786 +0.6 1.8 conserved protein of unknown function compare
PP_2637 +0.6 2.1 endo-1,4-D-glucanase subunit of cellulose synthase compare
PP_0957 +0.6 1.0 D-arabinose 5-phosphate isomerase compare
PP_2593 +0.6 2.9 Ferric siderophore ABC transporter, permease protein compare
PP_0959 +0.6 1.7 phospholipid ABC transporter compare
PP_2171 +0.6 1.9 Transporter, LysE family compare
PP_5486 +0.6 0.9 conserved protein of unknown function compare
PP_3484 +0.6 1.7 Response regulator receiver protein compare
PP_2747 +0.6 1.7 conserved protein of unknown function compare
PP_t13 +0.5 0.9 tRNA-Lys compare
PP_1781 +0.5 4.6 putative O-acyltransferase compare
PP_0971 +0.5 2.0 conserved protein of unknown function compare
PP_4833 +0.5 1.6 SURF1 domain protein compare
PP_1455 +0.5 1.5 conserved protein of unknown function compare
PP_1876 +0.5 1.7 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4653 +0.5 2.9 adenine:H+ symporter compare
PP_4159 +0.5 1.1 Potassium-transporting ATPase C chain compare
PP_2684 +0.5 1.4 conserved membrane protein of unknown function compare
PP_0769 +0.5 1.8 Sensor histidine kinase compare
PP_4771 +0.5 2.8 conserved membrane protein of unknown function compare
PP_5107 +0.5 1.4 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_3563 +0.5 1.3 conserved exported protein of unknown function compare
PP_5652 +0.5 1.2 conserved protein of unknown function, phage origin compare
PP_2653 +0.5 1.5 Transcriptional regulator, Cro/CI family compare
PP_1891 +0.5 2.0 Type 1 pili subunit FimI compare
PP_5621 +0.5 0.8 protein of unknown function compare
PP_2254 +0.5 2.6 Transcriptional regulator, GntR family compare
PP_2153 +0.5 1.6 conserved protein of unknown function compare
PP_1640 +0.5 2.4 putative inner membrane protein of unknown function compare
PP_3110 +0.5 0.7 protein of unknown function compare
PP_5265 +0.5 1.7 Xanthine phosphoribosyltransferase compare
PP_4136 +0.5 0.4 Transcriptional regulator, LuxR family compare
PP_5106 +0.5 1.2 conserved inner membrane protein compare
PP_1938 +0.5 1.4 conserved protein of unknown function compare
PP_3488 +0.5 1.8 Sco1/SenC family protein compare
PP_0249 +0.5 2.9 conserved protein of unknown function compare
PP_1074 +0.5 1.0 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_5702 +0.5 1.3 conserved protein of unknown function compare
PP_5359 +0.5 1.0 CobW/P47K family protein compare
PP_0540 +0.5 2.2 conserved inner membrane protein compare
PP_3541 +0.5 0.9 Transporter, MgtC family compare
PP_1736 +0.5 1.3 conserved protein of unknown function compare
PP_3707 +0.5 1.6 conserved protein of unknown function compare
PP_2457 +0.5 2.5 DNA-binding transcriptional repressor compare
PP_1619 +0.5 2.0 tRNA pseudouridine synthase D compare
PP_2331 +0.5 2.8 conserved membrane protein of unknown function compare
PP_2403 +0.5 0.4 Chemotaxis protein CheY compare
PP_5183 +0.5 1.9 glutamylpolyamine synthetase compare
PP_0574 +0.5 3.5 DNA-binding response regulator, LuxR family compare
PP_2256 +0.5 2.0 Transcriptional regulator, Cro/CI family compare
PP_0191 +0.5 0.9 Transcriptional regulatory protein AlgQ compare
PP_4180 +0.5 1.3 conserved protein of unknown function compare
PP_1628 +0.5 1.4 NMN amidohydrolase compare
PP_0868 +0.5 1.4 ABC transporter ATP-binding subunit compare
PP_5566 +0.5 2.1 protein of unknown function compare
PP_5553 +0.5 2.2 conserved protein of unknown function compare
PP_3932 +0.5 2.4 Diguanylate cyclase compare
PP_2821 +0.5 2.2 conserved exported protein of unknown function compare
PP_2777 +0.5 1.3 putative Acyl carrier protein compare
PP_5429 +0.5 2.2 protein of unknown function compare
PP_4669 +0.5 1.3 OmpA family protein compare
PP_0653 +0.5 1.0 conserved protein of unknown function compare
PP_2511 +0.5 0.7 conserved protein of unknown function compare
PP_3179 +0.5 1.9 Transcriptional regulator, LysR family compare
PP_3766 +0.5 1.4 Lactoylglutathione lyase compare
PP_2997 +0.5 2.3 CnmA compare
PP_2849 +0.5 2.3 urease accessory protein compare
PP_2760 +0.5 2.2 putative ribose transport permease protein compare
PP_5698 +0.5 1.6 conserved exported protein of unknown function compare
PP_2923 +0.5 1.6 conserved protein of unknown function compare
PP_0611 +0.4 1.8 Type IV pili biogenesis protein PilE compare
PP_3037 +0.4 1.9 C4-type zinc finger protein, DksA/TraR family compare
PP_4228 +0.4 1.4 conserved protein of unknown function compare
PP_2211 +0.4 1.9 Transcriptional regulator, AraC family compare
PP_0556 +0.4 0.7 Acetoin catabolism protein compare
PP_5313 +0.4 0.6 DNA-binding protein HU-alpha compare
PP_2776 +0.4 1.5 Homocysteine S-methyltransferase family protein compare
PP_3558 +0.4 2.0 putative Amino acid transporter, periplasmic amino acid-binding protein compare
PP_4778 +0.4 1.4 23S rRNA pseudouridine 2457 synthase compare
PP_3190 +0.4 0.8 Ornithine cyclodeaminase/mu-crystallin family protein compare
PP_2387 +0.4 0.6 conserved protein of unknown function compare
PP_3445 +0.4 1.8 conserved protein of unknown function compare
PP_3312 +0.4 1.2 putative Heat shock protein compare
PP_5232 +0.4 0.5 conserved protein of unknown function compare
PP_2527 +0.4 1.5 conserved membrane protein of unknown function compare
PP_0385 +0.4 2.1 putative serine acetyltransferase compare
PP_0509 +0.4 0.7 conserved protein of unknown function compare
PP_0384 +0.4 2.3 Transcriptional regulator, AsnC family compare
PP_1261 +0.4 1.5 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_4817 +0.4 1.5 MaoC domain protein compare
PP_5512 +0.4 2.0 protein of unknown function compare
PP_5218 +0.4 1.7 DedA family protein compare
PP_2646 +0.4 1.7 conserved protein of unknown function compare
PP_1508 +0.4 1.4 conserved protein of unknown function compare
PP_1119 +0.4 2.1 conserved protein of unknown function compare
PP_0685 +0.4 1.4 conserved protein of unknown function compare
PP_0209 +0.4 1.4 ATP-binding taurine transporter subunit compare
PP_4654 +0.4 2.6 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_2998 +0.4 1.8 2-dehydropantoate 2-reductase compare
PP_5428 +0.4 1.0 conserved exported protein of unknown function compare
PP_1440 +0.4 1.2 tRNA (mo5U34)-methyltransferase compare
PP_2947 +0.4 2.0 putative Transcriptional regulator MvaT, P16 subunit compare
PP_0151 +0.4 1.1 conserved exported protein of unknown function compare
PP_0206 +0.4 1.9 Ferredoxin, 4Fe-4S compare
PP_4770 +0.4 1.5 conserved protein of unknown function compare
PP_2204 +0.4 2.1 copper resistance protein B compare
PP_2163 +0.4 2.2 VacJ lipoprotein compare
PP_2836 +0.4 1.2 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_3400 +0.4 1.4 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas putida KT2440

For stress Carbenicillin disodium salt across organisms