Experiment set39IT035 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_0948 +1.8 7.4 Phosphocarrier protein HPr compare
PP_1062 +1.4 3.6 MutT/nudix family protein compare
PP_0630 +1.4 1.8 DNA gyrase inhibitor YacG compare
PP_1445 +1.4 7.0 carbohydrate-selective porin compare
PP_3810 +1.2 2.6 conserved protein of unknown function compare
PP_2889 +1.1 4.1 putative Transmembrane regulator PrtR compare
PP_1113 +1.1 8.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_2903 +1.1 2.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5473 +1.0 2.9 putative transcriptional regulator, LuxR family compare
PP_0048 +1.0 1.2 conserved protein of unknown function compare
PP_0306 +1.0 3.5 conserved protein of unknown function compare
PP_4844 +1.0 3.0 putative Urea ABC transporter, ATP-binding protein compare
PP_5145 +1.0 8.0 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1938 +1.0 2.7 conserved protein of unknown function compare
PP_4171 +0.9 7.4 conserved exported protein of unknown function compare
PP_1455 +0.9 2.4 conserved protein of unknown function compare
PP_3365 +0.9 1.0 Acetolactate synthase compare
PP_4517 +0.9 0.9 conserved protein of unknown function compare
PP_2511 +0.8 1.3 conserved protein of unknown function compare
PP_3487 +0.8 1.2 conserved exported protein of unknown function compare
PP_4581 +0.8 1.3 putative amidotransferase compare
PP_4808 +0.8 2.2 23S rRNA m3psi1915 methyltransferase compare
PP_3014 +0.8 1.4 conserved exported protein of unknown function compare
PP_2550 +0.8 1.5 putative transcriptional regulatory protein compare
PP_2668 +0.8 1.6 ABC efflux transporter, ATP-binding protein compare
PP_4262 +0.8 1.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0574 +0.8 5.0 DNA-binding response regulator, LuxR family compare
PP_2655 +0.7 1.5 conserved protein of unknown function compare
PP_1055 +0.7 0.7 Type II secretion pathway protein GspN compare
PP_5609 +0.7 1.3 conserved protein of unknown function compare
PP_5519 +0.7 2.4 conserved protein of unknown function of phage origin compare
PP_4159 +0.7 1.5 Potassium-transporting ATPase C chain compare
PP_0235 +0.7 1.5 Peroxidase compare
PP_2306 +0.6 0.9 conserved exported protein of unknown function compare
PP_4789 +0.6 2.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2332 +0.6 3.6 conserved exported protein of unknown function compare
PP_4814 +0.6 1.4 ATP-dependent protease La domain protein compare
PP_4102 +0.6 2.0 conserved protein of unknown function compare
PP_5508 +0.6 0.5 conserved protein of unknown function compare
PP_2804 +0.6 1.8 Hydrolase, alpha/beta fold family compare
PP_3234 +0.6 2.6 Heat shock protein, HSP20 family compare
PP_1824 +0.6 1.1 Smr domain protein compare
PP_0269 +0.6 2.1 putative Glutamate synthase, large subunit compare
PP_0839 +0.6 1.4 tRNA Cm32/Um32 methyltransferase compare
PP_2433 +0.6 0.8 conserved protein of unknown function compare
PP_3726 +0.6 0.6 Enoyl-CoA hydratase/isomerase family protein compare
PP_3043 +0.6 0.5 conserved protein of unknown function compare
PP_2927 +0.6 3.0 conserved protein of unknown function compare
PP_2319 +0.6 2.1 conserved protein of unknown function compare
PP_2330 +0.6 2.8 conserved protein of unknown function compare
PP_4642 +0.6 0.4 Cyclic diguanosine monophosphate-binding protein compare
PP_0899 +0.6 3.0 putative Ferredoxin reductase compare
PP_4329 +0.6 1.5 FlhB domain protein compare
PP_2054 +0.6 1.3 putative DNA-binding transcriptional regulator compare
PP_2883 +0.6 0.6 conserved protein of unknown function compare
PP_1528 +0.5 0.9 conserved protein of unknown function compare
PP_2683 +0.5 2.7 putative sensory box histidine kinase/response regulator compare
PP_2687 +0.5 2.5 conserved protein of unknown function compare
PP_5022 +0.5 0.6 Glutamine transport ATP-binding protein GlnQ compare
PP_0971 +0.5 2.2 conserved protein of unknown function compare
PP_2342 +0.5 1.6 conserved protein of unknown function compare
PP_5253 +0.5 1.4 Arylesterase compare
PP_4836 +0.5 1.8 conserved exported protein of unknown function compare
PP_0206 +0.5 1.2 Ferredoxin, 4Fe-4S compare
PP_5494 +0.5 2.2 protein of unknown function compare
PP_4762 +0.5 2.3 Acyl-CoA thioesterase II compare
PP_1692 +0.5 1.2 conserved protein of unknown function compare
PP_3855 +0.5 2.2 conserved protein of unknown function compare
PP_1269 +0.5 0.4 Universal stress protein family compare
PP_0737 +0.5 1.8 lipid A 3-O-deacylase compare
PP_1293 +0.5 0.6 molybdopterin synthase small subunit compare
PP_0685 +0.5 1.7 conserved protein of unknown function compare
PP_1713 +0.5 1.0 Transcriptional regulator PcaQ compare
PP_0524 +0.5 3.1 putative Periplasmic cobalamin-binding protein HutB compare
PP_0616 +0.5 1.7 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_1245 +0.5 1.9 conserved exported protein of unknown function compare
PP_0677 +0.5 0.8 putative Lipoprotein compare
PP_5038 +0.5 1.2 conserved lipoprotein of unknown function compare
PP_4214 +0.5 1.7 pyoverdine biosynthesis related protein compare
PP_3831 +0.5 2.0 conserved protein of unknown function compare
PP_3634 +0.5 1.7 putative acetyltransferase, GNAT family compare
PP_2999 +0.5 0.4 Glyoxalase family protein compare
PP_0868 +0.5 1.8 ABC transporter ATP-binding subunit compare
PP_0643 +0.5 1.1 protein of unknown function compare
PP_2090 +0.5 1.5 Uroporphyrinogen-III C-methyltransferase compare
PP_5701 +0.5 0.6 conserved protein of unknown function compare
PP_1632 +0.5 0.6 conserved protein of unknown function compare
PP_0951 +0.5 2.1 Ribosome hibernation promoting factor compare
PP_5085 +0.5 2.6 malic enzyme B compare
PP_5588 +0.5 1.8 conserved protein of unknown function compare
PP_1001 +0.5 1.6 arginine deiminase compare
PP_5176 +0.5 0.7 conserved protein of unknown function compare
PP_3840 +0.5 1.0 conserved protein of unknown function compare
PP_5732 +0.5 2.0 putative metal-binding protein compare
PP_4470 +0.5 1.4 putative transcriptional regulator (Arc domain-containing) compare
PP_5725 +0.5 1.4 protein of unknown function compare
PP_5446 +0.5 1.5 protein of unknown function compare
PP_0592 +0.5 3.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2256 +0.5 1.4 Transcriptional regulator, Cro/CI family compare
PP_1502 +0.5 2.4 OmpA family protein compare
PP_4720 +0.5 0.4 putative RNA binding protein compare
PP_1781 +0.5 4.0 putative O-acyltransferase compare
PP_0805 +0.5 2.6 Outer membrane efflux protein compare
PP_5658 +0.5 1.1 protein of unknown function compare
PP_0803 +0.5 2.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2716 +0.5 1.9 arsenate reductase compare
PP_4593 +0.5 0.4 conserved protein of unknown function compare
PP_5532 +0.5 1.7 conserved protein of unknown function compare
PP_5480 +0.5 1.8 conserved exported protein of unknown function compare
PP_1544 +0.5 1.1 conserved protein of unknown function compare
PP_t11 +0.5 1.3 tRNA-Lys compare
PP_3679 +0.4 1.6 conserved protein of unknown function compare
PP_3647 +0.4 1.1 putative Oxidoreductase compare
PP_2912 +0.4 2.0 conserved protein of unknown function compare
PP_1153 +0.4 1.5 putative lipoprotein compare
PP_2075 +0.4 2.2 conserved membrane protein of unknown function compare
PP_0806 +0.4 4.0 putative Surface adhesion protein compare
PP_1583 +0.4 1.8 putative Structural protein P5 compare
PP_4084 +0.4 1.6 conserved protein of unknown function compare
PP_1822 +0.4 2.1 conserved protein of unknown function compare
PP_2204 +0.4 1.9 copper resistance protein B compare
PP_5429 +0.4 2.0 protein of unknown function compare
PP_4945 +0.4 2.0 23S rRNA m(6)A2030 methyltransferase compare
PP_5735 +0.4 1.1 conserved hypothetical protein compare
PP_3241 +0.4 0.3 conserved exported protein of unknown function compare
PP_4555 +0.4 2.0 conserved protein of unknown function compare
PP_1855 +0.4 2.0 conserved exported protein of unknown function compare
PP_3864 +0.4 1.3 putative Phage FluMu DNA circulation protein compare
PP_1554 +0.4 0.8 conserved protein of unknown function compare
PP_5359 +0.4 0.6 CobW/P47K family protein compare
PP_5256 +0.4 1.9 Cyclic nucleotide-binding protein compare
PP_1623 +0.4 2.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_2132 +0.4 1.3 Universal stress protein compare
PP_4948 +0.4 2.3 Acyl-CoA dehydrogenase family protein compare
PP_4273 +0.4 0.5 Transcriptional regulator, MerR family compare
PP_2593 +0.4 2.3 Ferric siderophore ABC transporter, permease protein compare
PP_4073 +0.4 0.8 conserved exported protein of unknown function compare
PP_0542 +0.4 1.7 ethanolamine ammonia-lyase, beta-subunit compare
PP_0703 +0.4 0.7 putative Transmembrane sensor compare
PP_0190 +0.4 1.5 putative disulfide bond formation protein B compare
PP_2176 +0.4 1.7 transcriptional regulator, LysR family compare
PP_1344 +0.4 0.7 conserved protein of unknown function compare
PP_4653 +0.4 1.8 adenine:H+ symporter compare
PP_3455 +0.4 2.0 Multidrug efflux RND membrane fusion protein compare
PP_2650 +0.4 0.5 putative 4-hydroxybutyrate dehydrogenase compare
PP_3910 +0.4 2.0 conserved protein of unknown function compare
PP_3851 +0.4 2.0 conserved protein of unknown function compare
PP_2491 +0.4 1.8 ThiJ/PfpI family protein compare
PP_0960 +0.4 2.5 phospholipid ABC transporter binding protein compare
PP_4629 +0.4 1.7 Sensory box protein compare
PP_5201 +0.4 0.8 conserved protein of unknown function, UPF0149 family compare
PP_4982 +0.4 1.4 putative cytochrome b561, iron-regulated compare
PP_2819 +0.4 1.2 Outer membrane protein OprJ compare
PP_1309 +0.4 2.0 conserved exported protein of unknown function compare
PP_2573 +0.4 2.6 conserved protein of unknown function compare
PP_1508 +0.4 1.0 conserved protein of unknown function compare
PP_2023 +0.4 0.8 Glutathione S-transferase family protein compare
PP_2181 +0.4 1.2 Transcriptional regulator, Cro/CI family compare
PP_2140 +0.4 1.6 conserved protein of unknown function compare
PP_3221 +0.4 1.7 ABC transporter, permease protein compare
PP_1020 +0.4 0.5 putative glucose-6-phosphate 1-epimerase compare
PP_3549 +0.4 2.3 multidrug efflux transport system - membrane fusion protein compare
PP_5204 +0.4 0.9 conserved protein of unknown function compare
PP_3328 +0.4 0.6 putative Ring-cleaving dioxygenase compare
PP_2247 +0.4 1.1 putative Endoribonuclease compare
PP_3874 +0.4 0.7 conserved protein of unknown function compare
PP_0958 +0.4 2.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0198 +0.4 1.3 putative transporter compare
PP_1466 +0.4 0.7 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_1241 +0.4 1.9 conserved protein of unknown function compare
PP_5452 +0.4 1.7 protein of unknown function compare
PP_4450 +0.4 1.9 Phosphoglycerate mutase family protein compare
PP_5748 +0.4 0.6 cytochrome c heme lyase subunit compare
PP_2611 +0.4 1.2 membrane protein of unknown function compare
PP_4015 +0.4 1.7 HflD-like high frequency lysogenization protein compare
PP_3308 +0.4 2.2 promiscuous aromatic aldehyde dehydrogenase, 2Fe-2S subunit compare
PP_4249 +0.4 1.9 conserved protein of unknown function compare
PP_5200 +0.4 2.1 proline aminopeptidase P II compare
PP_2490 +0.4 1.8 Flavoprotein compare
PP_0204 +0.4 1.7 Transcriptional regulator, GntR family compare
PP_4167 +0.4 2.4 Phosphohistidine phosphatase SixA compare
PP_1825 +0.4 1.7 conserved exported protein of unknown function compare
PP_3095 +0.4 2.2 Protein ClpV1 compare
PP_4947 +0.4 3.1 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_5730 +0.4 1.8 conserved protein of unknown function compare
PP_3135 +0.4 1.6 putative Glycosyl transferase compare
PP_4238 +0.4 1.0 conserved protein of unknown function compare
PP_5714 +0.4 0.8 conserved protein of unknown function compare
PP_2930 +0.4 1.3 putative L-serine dehydratase compare
PP_4435 +0.4 1.0 conserved protein of unknown function compare
PP_2990 +0.4 1.6 Transcriptional regulator, MerR family compare
PP_3035 +0.4 0.8 conserved protein of unknown function compare
PP_3532 +0.4 0.7 Transcriptional regulator, AsnC family compare
PP_5558 +0.4 0.7 putative transcriptional xre family of phage origin compare
PP_4572 +0.4 1.8 conserved exported protein of unknown function compare
PP_0821 +0.4 1.3 conserved exported protein of unknown function compare
PP_2118 +0.4 1.1 conserved protein of unknown function compare
PP_4994 +0.4 1.7 conserved protein of unknown function compare
PP_0183 +0.4 1.7 glutathione S-transferase compare
PP_2331 +0.4 1.8 conserved membrane protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For stress Carbenicillin disodium salt in Pseudomonas putida KT2440

For stress Carbenicillin disodium salt across organisms