Experiment set39IT034 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

200 most important genes:

  gene name fitness t score description  
PP_4724 -10.3 -14.3 Carbamoyl-phosphate synthase small chain compare
PP_4723 -10.3 -27.6 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.3 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1385 -7.0 -21.6 Probable efflux pump membrane transporter TtgB compare
PP_1386 -6.9 -10.6 Probable efflux pump periplasmic linker TtgA compare
PP_1384 -6.8 -13.8 Probable efflux pump outer membrane protein TtgC compare
PP_3511 -6.6 -4.6 Branched-chain-amino-acid aminotransferase compare
PP_0967 -6.4 -4.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -6.2 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -6.1 -4.2 Ornithine carbamoyltransferase compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_1988 -6.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_0965 -6.0 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4678 -6.0 -4.1 Ketol-acid reductoisomerase compare
PP_1088 -6.0 -5.8 Argininosuccinate synthase compare
PP_0966 -5.9 -5.8 Histidinol dehydrogenase compare
PP_4999 -5.8 -5.7 dihydroorotase-like protein compare
PP_4909 -5.8 -4.0 phosphoserine phosphatase compare
PP_0420 -5.7 -6.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2168 -5.6 -5.5 Transaldolase compare
PP_5097 -5.5 -8.5 homoserine O-acetyltransferase compare
PP_0417 -5.5 -15.2 Anthranilate synthase component 1 compare
PP_4680 -5.5 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0961 -5.4 -9.6 toluene tolerance protein compare
PP_5098 -5.3 -5.2 methionine biosynthesis protein MetW compare
PP_2001 -5.3 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_4700 -5.3 -3.6 pantothenate synthetase compare
PP_0691 -5.3 -14.3 Glutamate 5-kinase compare
PP_5015 -5.2 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5289 -5.1 -3.5 Acetylglutamate kinase compare
PP_0290 -5.1 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -5.1 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2163 -5.0 -11.5 VacJ lipoprotein compare
PP_0289 -4.9 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_1231 -4.7 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5155 -4.6 -6.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -4.6 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0958 -4.6 -9.8 phospholipid ABC transporter ATP-binding subunit compare
PP_0421 -4.6 -8.9 Anthranilate phosphoribosyltransferase compare
PP_0959 -4.6 -6.2 phospholipid ABC transporter compare
PP_2371 -4.5 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_0960 -4.4 -8.2 phospholipid ABC transporter binding protein compare
PP_1664 -4.4 -3.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_5347 -4.4 -13.4 pyruvate carboxylase subunit A compare
PP_0184 -4.3 -3.0 Argininosuccinate lyase compare
PP_4890 -4.3 -5.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -4.2 -7.8 Dihydroxy-acid dehydratase compare
PP_4679 -4.2 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -4.1 -12.9 pyruvate carboxylase subunit B compare
PP_3417 -4.1 -6.2 D-gluconate transporter compare
PP_3999 -4.0 -7.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0082 -4.0 -2.8 tryptophan synthase alpha chain compare
PP_5104 -3.9 -9.2 thiazole synthase compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_1912 -3.9 -9.7 Phosphate acyltransferase compare
PP_2414 -3.8 -2.5 conserved exported protein of unknown function compare
PP_1344 -3.8 -2.4 conserved protein of unknown function compare
PP_1233 -3.8 -7.4 sulfurtransferase compare
PP_5348 -3.8 -11.6 Transcriptional regulator, LysR family compare
PP_5303 -3.7 -6.1 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0962 -3.6 -4.1 toluene-tolerance protein compare
PP_0276 -3.6 -1.2 Transcriptional regulator, Cro/CI family compare
PP_4782 -3.4 -7.3 Phosphomethylpyrimidine kinase compare
PP_5014 -3.3 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0735 -3.3 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5594 -3.2 -2.1 conserved protein of unknown function compare
PP_4701 -3.2 -1.0 glucose-6-phosphate isomerase compare
PP_2000 -3.2 -2.2 amidophosphoribosyl transferase compare
PP_0291 -3.1 -3.2 conserved protein of unknown function compare
PP_1215 -3.1 -1.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_1054 -2.9 -2.0 Type II secretion pathway protein XcpZ compare
PP_4922 -2.9 -13.7 Phosphomethylpyrimidine synthase compare
PP_0856 -2.9 -2.8 conserved lipoprotein of unknown function compare
PP_4937 -2.8 -5.7 toluene tolerance protein compare
PP_0292 -2.8 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -2.8 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -2.8 -7.8 2-isopropylmalate synthase compare
PP_4699 -2.8 -5.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0725 -2.8 -8.2 conserved hypothetical TPR repeat protein compare
PP_0809 -2.8 -11.2 disulfide bond formation protein B compare
PP_1493 -2.7 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1362 -2.7 -4.0 pyruvate kinase II compare
PP_1128 -2.7 -3.6 OmpA family protein compare
PP_2370 -2.6 -2.5 conserved protein of unknown function compare
PP_t12 -2.6 -0.8 tRNA-Thr compare
PP_0363 -2.5 -12.2 8-amino-7-oxononanoate synthase compare
PP_4099 -2.4 -18.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3614 -2.4 -3.3 conserved membrane protein of unknown function compare
PP_0127 -2.4 -9.3 Thiol:disulfide interchange protein compare
PP_5217 -2.3 -18.7 Polyphosphate kinase compare
PP_1348 -2.3 -5.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_4342 -2.3 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_5350 -2.3 -4.8 Transcriptional regulator, RpiR family compare
PP_1650 -2.2 -14.5 Sensor protein GacS compare
PP_0364 -2.2 -9.0 pimeloyl-[acp] methyl ester esterase compare
PP_4984 -2.2 -9.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1906 -2.1 -5.1 ribosomal large subunit pseudouridine synthase C compare
PP_0366 -2.1 -7.6 dethiobiotin synthetase compare
PP_5227 -2.1 -9.0 diaminopimelate decarboxylase compare
PP_1428 -2.1 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_0362 -2.1 -9.7 Biotin synthase compare
PP_1022 -2.0 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1656 -2.0 -5.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_4370 -2.0 -4.1 Flagellar hook-basal body complex protein FliE compare
PP_4804 -2.0 -3.5 RlpA-like lipoprotein compare
PP_5058 -2.0 -6.3 Carboxy-terminal-processing protease compare
PP_0833 -1.9 -2.8 queuine tRNA-ribosyltransferase compare
PP_5230 -1.9 -1.8 Tyrosine recombinase XerC compare
PP_t29 -1.9 -1.7 tRNA-Ala compare
PP_2203 -1.9 -1.9 conserved protein of unknown function compare
PP_1110 -1.9 -2.8 serine acetyltransferase compare
PP_3946 -1.9 -0.9 HTH-type transcriptional repressor NicR compare
PP_2087 -1.8 -2.1 CmpX protein compare
PP_0365 -1.8 -7.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4343 -1.8 -5.8 Flagellar biosynthesis protein FlhF compare
PP_2928 -1.8 -9.2 Saccharopine dehydrogenase compare
PP_4354 -1.7 -3.5 flagellar export apparatus subunit compare
PP_2442 -1.7 -1.7 conserved protein of unknown function, DUF480 family compare
PP_4546 -1.7 -3.2 ATP-dependent helicase HrpA compare
PP_0377 -1.7 -1.4 coenzyme PQQ synthesis protein D compare
PP_1310 -1.7 -2.6 conserved hypothetical protein compare
PP_0368 -1.7 -8.3 putative Acyl-CoA dehydrogenase compare
PP_1827 -1.7 -6.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase conserved
PP_5456 -1.6 -0.7 conserved protein of unknown function compare
PP_1293 -1.6 -1.0 molybdopterin synthase small subunit compare
PP_2999 -1.6 -0.7 Glyoxalase family protein compare
PP_1366 -1.6 -2.6 Transcriptional regulator MvaT, P16 subunit compare
PP_0063 -1.6 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0513 -1.6 -1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0379 -1.6 -5.0 Coenzyme PQQ synthesis protein B compare
PP_1111 -1.6 -5.5 putative Synthetase compare
PP_4517 -1.5 -1.6 conserved protein of unknown function compare
PP_0164 -1.5 -6.4 conserved protein of unknown function compare
PP_2348 -1.5 -3.2 Sensor histidine kinase compare
PP_4344 -1.5 -8.3 flagellar export pore protein compare
PP_1702 -1.5 -3.6 Recombination-associated protein RdgC compare
PP_5048 -1.5 -4.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4367 -1.5 -3.3 Flagellar assembly protein FliH compare
PP_2439 -1.4 -1.9 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4880 -1.4 -1.7 exoribonuclease R compare
PP_0914 -1.4 -6.9 GGDEF domain protein compare
PP_4358 -1.4 -6.6 flagellar synthesis, switching and energizing component compare
PP_0980 -1.4 -6.3 Probable cytosol aminopeptidase compare
PP_1629 -1.4 -3.6 Protein RecA compare
PP_5000 -1.4 -1.4 peptidase component of the ATP-dependent HslVU protease compare
PP_1994 -1.4 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_0848 -1.4 -1.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1217 -1.4 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4368 -1.4 -4.3 flagellar motor switch protein compare
PP_4353 -1.4 -6.1 Flagellar biosynthetic protein fliR compare
PP_4004 -1.4 -3.6 DNA translocase FtsK compare
PP_3522 -1.3 -2.7 conserved protein of unknown function compare
PP_5610 -1.3 -1.2 protein of unknown function compare
PP_4378 -1.3 -8.5 flagellin, filament structural protein compare
PP_2044 -1.3 -1.4 conserved inner membrane protein of unknown function compare
PP_0381 -1.3 -5.1 Coenzyme PQQ synthesis protein F compare
PP_1783 -1.3 -0.9 dTDP-glucose pyrophosphorylase compare
PP_1941 -1.3 -5.3 conserved protein of unknown function compare
PP_5331 -1.3 -4.7 Long-chain acyl-CoA thioester hydrolase compare
PP_2820 -1.3 -1.1 HTH-type transcriptional regulator nfxB compare
PP_4355 -1.3 -1.3 flagellar export apparatus subunit compare
PP_5495 -1.3 -1.9 protein of unknown function compare
PP_1303 -1.3 -6.3 Sulfate adenylyltransferase subunit 2 compare
PP_2737 -1.3 -0.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0191 -1.3 -1.4 Transcriptional regulatory protein AlgQ compare
PP_4376 -1.3 -7.4 flagellar filament capping protein compare
PP_5706 -1.3 -3.1 Sec translocation complex - SecG subunit compare
PP_4337 -1.3 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0852 -1.3 -2.0 Transcriptional regulator, Cro/CI family compare
PP_0832 -1.2 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5445 -1.2 -2.0 conserved protein of unknown function compare
PP_2324 -1.2 -4.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2456 -1.2 -2.7 D-ribose ABC transporter - permease subunit compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_5095 -1.2 -5.7 pyrroline-5-carboxylate reductase compare
PP_1553 -1.2 -2.5 conserved protein of unknown function compare
PP_4902 -1.2 -2.5 Oligoribonuclease compare
PP_3603 -1.2 -4.1 Transcriptional regulator, GntR family compare
PP_4369 -1.2 -5.6 Flagellar M-ring protein compare
PP_4391 -1.2 -4.1 flagellar basal-body rod protein FlgB compare
PP_4352 -1.2 -7.6 flagellin export apparatus, substrate specificity protein compare
PP_2322 -1.2 -3.2 Major outer membrane lipoprotein compare
PP_4359 -1.2 -4.2 Flagellar protein FliL compare
PP_3454 -1.2 -4.4 putative transcriptional regulatory protein compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2929 -1.1 -7.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5329 -1.1 -6.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4380 -1.1 -8.2 Flagellar hook-associated protein FlgL compare
PP_0376 -1.1 -5.6 Coenzyme PQQ synthesis protein E compare
PP_2289 -1.1 -3.4 conserved exported protein of unknown function compare
PP_4366 -1.1 -5.8 flagellum-specific ATP synthase compare
PP_4381 -1.1 -6.9 Flagellar hook-associated protein FlgK compare
PP_2525 -1.1 -2.4 conserved protein of unknown function compare
PP_0152 -1.1 -1.2 conserved exported protein of unknown function compare
PP_5571 -1.1 -0.8 conserved protein of unknown function compare
PP_5035 -1.1 -4.5 Histidine utilization repressor compare
PP_4301 -1.1 -1.3 Pyruvate kinase compare


Specific Phenotypes

For 4 genes in this experiment

For stress Chloramphenicol in Pseudomonas putida KT2440

For stress Chloramphenicol across organisms