Experiment set39IT033 for Pseudomonas putida KT2440

Compare to:

MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

200 most important genes:

  gene name fitness t score description  
PP_4723 -9.6 -26.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -8.2 -13.2 Carbamoyl-phosphate synthase small chain compare
PP_1384 -7.8 -10.8 Probable efflux pump outer membrane protein TtgC compare
PP_0293 -7.3 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1386 -7.2 -9.8 Probable efflux pump periplasmic linker TtgA compare
PP_1385 -6.8 -23.3 Probable efflux pump membrane transporter TtgB compare
PP_0967 -6.4 -4.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0787 -6.2 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.2 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1079 -6.2 -4.2 Ornithine carbamoyltransferase compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_1088 -6.1 -4.2 Argininosuccinate synthase compare
PP_0966 -6.1 -4.2 Histidinol dehydrogenase compare
PP_1988 -6.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_4678 -6.0 -4.2 Ketol-acid reductoisomerase compare
PP_0965 -6.0 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0420 -5.7 -5.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -5.7 -5.6 phosphoserine phosphatase compare
PP_1231 -5.6 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5098 -5.6 -3.9 methionine biosynthesis protein MetW compare
PP_2168 -5.6 -5.5 Transaldolase compare
PP_5015 -5.6 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4999 -5.6 -4.4 dihydroorotase-like protein compare
PP_4890 -5.5 -3.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_3511 -5.5 -9.2 Branched-chain-amino-acid aminotransferase compare
PP_5155 -5.5 -5.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0417 -5.4 -15.7 Anthranilate synthase component 1 compare
PP_4680 -5.3 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0691 -5.3 -15.0 Glutamate 5-kinase compare
PP_0962 -5.3 -3.7 toluene-tolerance protein compare
PP_4700 -5.3 -3.7 pantothenate synthetase compare
PP_5097 -5.2 -11.6 homoserine O-acetyltransferase compare
PP_0960 -5.2 -7.1 phospholipid ABC transporter binding protein compare
PP_5185 -5.1 -3.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -5.1 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2414 -5.1 -3.4 conserved exported protein of unknown function compare
PP_0959 -5.1 -4.9 phospholipid ABC transporter compare
PP_0961 -4.9 -10.0 toluene tolerance protein compare
PP_4679 -4.9 -3.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2327 -4.9 -9.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2163 -4.9 -10.8 VacJ lipoprotein compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_5289 -4.6 -4.5 Acetylglutamate kinase compare
PP_1233 -4.6 -8.0 sulfurtransferase compare
PP_2371 -4.4 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_0421 -4.4 -8.0 Anthranilate phosphoribosyltransferase compare
PP_1664 -4.4 -3.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_0958 -4.3 -8.8 phospholipid ABC transporter ATP-binding subunit compare
PP_0184 -4.3 -3.0 Argininosuccinate lyase compare
PP_2001 -4.2 -7.0 O-succinylhomoserine sulfhydrylase compare
PP_5128 -4.2 -7.5 Dihydroxy-acid dehydratase compare
PP_5348 -4.2 -11.7 Transcriptional regulator, LysR family compare
PP_0289 -4.2 -7.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5346 -4.1 -14.6 pyruvate carboxylase subunit B compare
PP_5347 -4.0 -15.1 pyruvate carboxylase subunit A compare
PP_0082 -4.0 -2.8 tryptophan synthase alpha chain compare
PP_1912 -4.0 -9.1 Phosphate acyltransferase compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_5104 -3.8 -11.0 thiazole synthase compare
PP_4271 -3.8 -1.3 conserved protein of unknown function compare
PP_2087 -3.8 -2.6 CmpX protein compare
PP_2387 -3.8 -2.3 conserved protein of unknown function compare
PP_3999 -3.6 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3417 -3.6 -6.9 D-gluconate transporter compare
PP_0292 -3.5 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4937 -3.4 -7.3 toluene tolerance protein compare
PP_5014 -3.4 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4699 -3.4 -6.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0735 -3.3 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_4782 -3.3 -6.7 Phosphomethylpyrimidine kinase compare
PP_2000 -3.2 -2.2 amidophosphoribosyl transferase compare
PP_2328 -3.2 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_5110 -3.1 -1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5303 -3.1 -5.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4922 -3.0 -14.4 Phosphomethylpyrimidine synthase compare
PP_1348 -3.0 -10.7 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0127 -2.9 -9.1 Thiol:disulfide interchange protein compare
PP_0291 -2.8 -4.2 conserved protein of unknown function compare
PP_0834 -2.8 -2.2 Sec translocation complex subunit YajC compare
PP_2737 -2.7 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1293 -2.7 -1.3 molybdopterin synthase small subunit compare
PP_1994 -2.6 -1.8 tRNA pseudouridine (38-40)synthase compare
PP_5058 -2.6 -10.7 Carboxy-terminal-processing protease compare
PP_1025 -2.5 -7.2 2-isopropylmalate synthase compare
PP_2370 -2.5 -2.9 conserved protein of unknown function compare
PP_1428 -2.5 -3.7 Sigma factor AlgU negative regulatory protein compare
PP_0809 -2.4 -9.6 disulfide bond formation protein B compare
PP_4697 -2.3 -3.5 poly(A) polymerase compare
PP_5217 -2.3 -17.2 Polyphosphate kinase compare
PP_4383 -2.3 -3.2 Flagellar P-ring protein compare
PP_1366 -2.3 -2.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4984 -2.2 -11.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2345 -2.2 -3.3 conserved exported protein of unknown function compare
PP_0362 -2.2 -9.6 Biotin synthase compare
PP_4343 -2.2 -6.1 Flagellar biosynthesis protein FlhF compare
PP_5048 -2.1 -5.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2409 -2.1 -3.2 cobalt-zinc-cadmium resistance protein compare
PP_1906 -2.1 -3.9 ribosomal large subunit pseudouridine synthase C compare
PP_0725 -2.1 -6.5 conserved hypothetical TPR repeat protein compare
PP_0363 -2.1 -11.5 8-amino-7-oxononanoate synthase compare
PP_1022 -2.1 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_3891 -2.0 -3.0 conserved protein of unknown function compare
PP_0365 -2.0 -9.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4696 -2.0 -5.2 Nitrogen regulation protein NR(I) compare
PP_4099 -2.0 -16.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1629 -2.0 -3.0 Protein RecA compare
PP_1827 -2.0 -7.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase conserved
PP_0152 -1.9 -1.7 conserved exported protein of unknown function compare
PP_0232 -1.9 -0.9 ATP-binding taurine transporter subunit compare
PP_1650 -1.9 -14.2 Sensor protein GacS compare
PP_5227 -1.9 -7.7 diaminopimelate decarboxylase compare
PP_1656 -1.9 -4.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_2031 -1.8 -1.5 conserved protein of unknown function compare
PP_5054 -1.8 -2.0 glutaredoxin 3 compare
PP_0366 -1.8 -6.9 dethiobiotin synthetase compare
PP_4517 -1.8 -1.8 conserved protein of unknown function compare
PP_1344 -1.7 -1.7 conserved protein of unknown function compare
PP_0381 -1.7 -7.5 Coenzyme PQQ synthesis protein F compare
PP_0856 -1.7 -3.4 conserved lipoprotein of unknown function compare
PP_4353 -1.7 -5.1 Flagellar biosynthetic protein fliR compare
PP_2402 -1.7 -1.9 putative Sensor histidine kinase compare
PP_4902 -1.7 -2.4 Oligoribonuclease compare
PP_1468 -1.7 -2.7 Tyrosine recombinase XerD compare
PP_3474 -1.7 -2.7 putative Curli fiber protein CsgE compare
PP_1110 -1.6 -3.8 serine acetyltransferase compare
PP_1128 -1.6 -3.2 OmpA family protein compare
PP_4895 -1.6 -2.9 tRNA dimethylallyltransferase compare
PP_4396 -1.6 -3.9 conserved protein of unknown function compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0364 -1.6 -9.2 pimeloyl-[acp] methyl ester esterase compare
PP_5329 -1.6 -8.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3808 -1.6 -1.1 Antibiotic synthesis protein MbtH compare
PP_0513 -1.6 -1.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0001 -1.6 -1.0 probable chromosome-partitioning protein compare
PP_2439 -1.6 -1.8 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4382 -1.6 -6.7 Peptidoglycan hydrolase FlgJ compare
PP_1055 -1.6 -0.7 Type II secretion pathway protein GspN compare
PP_4136 -1.6 -0.7 Transcriptional regulator, LuxR family compare
PP_4369 -1.5 -7.5 Flagellar M-ring protein compare
PP_5338 -1.5 -1.8 aspartate ammonia-lyase compare
PP_4356 -1.5 -6.6 Flagellar protein FliO compare
PP_0378 -1.5 -6.1 Pyrroloquinoline-quinone synthase compare
PP_0593 -1.5 -0.7 putative ribosome-binding factor compare
PP_4342 -1.5 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_1215 -1.5 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_1217 -1.5 -2.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4880 -1.5 -1.4 exoribonuclease R compare
PP_2348 -1.5 -3.5 Sensor histidine kinase compare
PP_1216 -1.5 -1.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5331 -1.5 -5.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4879 -1.5 -2.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_4390 -1.4 -6.3 flagellar basal-body rod protein FlgC compare
PP_1111 -1.4 -5.2 putative Synthetase compare
PP_1232 -1.4 -8.0 conserved exported protein of unknown function compare
PP_2322 -1.4 -3.9 Major outer membrane lipoprotein compare
PP_4004 -1.4 -4.1 DNA translocase FtsK compare
PP_4199 -1.4 -1.0 putative Lipoprotein compare
PP_3454 -1.4 -5.7 putative transcriptional regulatory protein compare
PP_4964 -1.4 -0.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4344 -1.4 -8.3 flagellar export pore protein compare
PP_0063 -1.4 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4785 -1.3 -4.2 conserved exported protein of unknown function compare
PP_1304 -1.3 -6.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4546 -1.3 -3.1 ATP-dependent helicase HrpA compare
PP_4366 -1.3 -8.2 flagellum-specific ATP synthase compare
PP_2929 -1.3 -7.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4378 -1.3 -9.1 flagellin, filament structural protein compare
PP_0401 -1.3 -0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_0980 -1.3 -5.5 Probable cytosol aminopeptidase compare
PP_4370 -1.3 -3.2 Flagellar hook-basal body complex protein FliE compare
PP_3637 -1.3 -2.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4381 -1.3 -8.1 Flagellar hook-associated protein FlgK compare
PP_3726 -1.3 -0.8 Enoyl-CoA hydratase/isomerase family protein compare
PP_1941 -1.3 -3.8 conserved protein of unknown function compare
PP_4804 -1.3 -3.5 RlpA-like lipoprotein compare
PP_4391 -1.3 -5.2 flagellar basal-body rod protein FlgB compare
PP_4916 -1.2 -2.5 putative esterase compare
PP_1493 -1.2 -3.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4341 -1.2 -4.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5610 -1.2 -1.2 protein of unknown function compare
PP_4268 -1.2 -1.0 nucleoid-associated broad specificity regulator compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_4380 -1.2 -8.2 Flagellar hook-associated protein FlgL compare
PP_0368 -1.2 -6.6 putative Acyl-CoA dehydrogenase compare
PP_2324 -1.2 -5.8 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4375 -1.2 -6.1 flagellar chaperone, inhibits premature FliC assembly compare
PP_0379 -1.2 -5.3 Coenzyme PQQ synthesis protein B compare
PP_1836 -1.2 -2.4 putative metal transporter, ZIP family compare
PP_4394 -1.2 -3.7 flagella basal body P-ring formation protein compare
PP_5095 -1.2 -5.7 pyrroline-5-carboxylate reductase compare
PP_4896 -1.2 -7.0 DNA mismatch repair protein MutL compare
PP_4358 -1.2 -5.3 flagellar synthesis, switching and energizing component compare
PP_2928 -1.2 -6.2 Saccharopine dehydrogenase compare
PP_4681 -1.2 -1.5 conserved protein of unknown function compare
PP_2456 -1.2 -3.3 D-ribose ABC transporter - permease subunit compare
PP_5084 -1.2 -6.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5090 -1.2 -1.0 putative cell division protein compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_1242 -1.2 -2.9 conserved protein of unknown function compare


Specific Phenotypes

For 6 genes in this experiment

For stress Chloramphenicol in Pseudomonas putida KT2440

For stress Chloramphenicol across organisms