Experiment set39IT032 for Pseudomonas putida KT2440

Compare to:

Hippuric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4723 -11.4 -21.9 Carbamoyl-phosphate synthase large chain compare
PP_4724 -11.0 -15.1 Carbamoyl-phosphate synthase small chain compare
PP_0293 -7.4 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.8 -4.7 dihydroorotase-like protein compare
PP_0989 -6.6 -4.6 glycine cleavage system H protein 1 compare
PP_3511 -6.4 -6.3 Branched-chain-amino-acid aminotransferase compare
PP_0691 -6.3 -18.6 Glutamate 5-kinase compare
PP_0787 -6.3 -4.3 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0422 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_1079 -6.2 -4.3 Ornithine carbamoyltransferase compare
PP_1995 -6.2 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5076 -6.1 -6.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_1985 -6.1 -4.2 3-isopropylmalate dehydratase large subunit compare
PP_2327 -6.1 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1988 -6.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_4678 -6.1 -4.2 Ketol-acid reductoisomerase compare
PP_0420 -6.1 -4.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1088 -6.0 -5.9 Argininosuccinate synthase compare
PP_5048 -6.0 -4.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5075 -5.9 -4.1 glutamate synthase (NADPH) beta subunit compare
PP_0966 -5.9 -7.0 Histidinol dehydrogenase compare
PP_0988 -5.8 -6.9 glycine dehydrogenase compare
PP_5097 -5.7 -8.8 homoserine O-acetyltransferase compare
PP_5098 -5.7 -3.9 methionine biosynthesis protein MetW compare
PP_0965 -5.7 -10.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0417 -5.7 -14.2 Anthranilate synthase component 1 compare
PP_0967 -5.6 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -5.6 -6.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5047 -5.5 -6.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4700 -5.4 -3.7 pantothenate synthetase compare
PP_1231 -5.4 -6.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0290 -5.2 -3.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0986 -5.2 -5.0 aminomethyltransferase compare
PP_2001 -5.2 -10.4 O-succinylhomoserine sulfhydrylase compare
PP_5185 -5.2 -3.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5015 -5.1 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0997 -5.0 -6.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
PP_0250 -4.9 -2.9 heat shock protein Hsp15 involved in ribosome recycling compare
PP_2168 -4.8 -11.7 Transaldolase compare
PP_1986 -4.8 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_1589 -4.7 -10.4 uridylyltransferase compare
PP_4890 -4.6 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_2371 -4.6 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -4.5 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4679 -4.5 -5.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -4.4 -7.7 Anthranilate phosphoribosyltransferase compare
PP_5203 -4.2 -11.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_5128 -4.2 -7.4 Dihydroxy-acid dehydratase compare
PP_0289 -4.2 -6.5 Imidazoleglycerol-phosphate dehydratase compare
PP_0292 -4.2 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -4.1 -4.9 Argininosuccinate lyase compare
PP_5104 -4.1 -10.4 thiazole synthase compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_5303 -4.0 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0083 -4.0 -2.8 tryptophan synthase beta chain compare
PP_1025 -4.0 -12.5 2-isopropylmalate synthase compare
PP_1233 -3.9 -9.5 sulfurtransferase compare
PP_5289 -3.8 -5.2 Acetylglutamate kinase compare
PP_0846 -3.6 -2.2 DnaK-like molecular chaperone specific for IscU compare
PP_t29 -3.6 -2.4 tRNA-Ala compare
PP_3105 -3.6 -2.7 conserved membrane protein of unknown function compare
PP_2704 -3.5 -11.2 Peptidase, M20/M25/M40 family compare
PP_2378 -3.4 -3.3 Fe/S biogenesis protein NfuA compare
PP_5014 -3.4 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_4699 -3.3 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0963 -3.2 -4.0 putative BolA family protein compare
PP_2000 -3.2 -2.2 amidophosphoribosyl transferase compare
PP_4782 -3.2 -7.1 Phosphomethylpyrimidine kinase compare
PP_4922 -3.1 -15.9 Phosphomethylpyrimidine synthase compare
PP_t10 -3.1 -1.5 tRNA-Pro compare
PP_2328 -3.0 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_0291 -2.9 -3.0 conserved protein of unknown function compare
PP_1493 -2.9 -4.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2370 -2.9 -2.8 conserved protein of unknown function compare
PP_1664 -2.8 -7.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_5095 -2.8 -7.5 pyrroline-5-carboxylate reductase compare
PP_4480 -2.8 -11.4 arginine N-succinyltransferase, subunit alpha compare
PP_1127 -2.7 -11.7 Carboxylesterase compare
PP_4993 -2.7 -2.6 Glutathione synthetase compare
PP_4696 -2.7 -5.4 Nitrogen regulation protein NR(I) compare
PP_4684 -2.7 -10.4 conserved protein of unknown function with kinase-like domain compare
PP_2701 -2.7 -7.5 Transcriptional regulator, LysR family compare
PP_1377 -2.7 -9.1 beta-ketoadipyl-CoA thiolase compare
PP_3951 -2.6 -8.0 3-oxoadipate CoA-transferase subunit A compare
PP_2388 -2.5 -7.4 Transporter, LysE family compare
PP_1366 -2.5 -3.1 Transcriptional regulator MvaT, P16 subunit compare
PP_2031 -2.5 -1.5 conserved protein of unknown function compare
PP_5227 -2.5 -9.9 diaminopimelate decarboxylase compare
PP_2402 -2.4 -2.3 putative Sensor histidine kinase compare
PP_2820 -2.4 -3.8 HTH-type transcriptional regulator nfxB compare
PP_1912 -2.4 -7.7 Phosphate acyltransferase compare
PP_3952 -2.4 -11.0 3-oxoadipate CoA-transferase subunit A compare
PP_0735 -2.4 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5233 -2.3 -9.5 ammonium transporter AmtB compare
PP_5217 -2.2 -17.8 Polyphosphate kinase compare
PP_1348 -2.2 -6.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2703 -2.2 -13.4 major facilitator transporter compare
PP_4828 -2.2 -1.5 Precorrin-8X methylmutase compare
PP_0117 -2.2 -3.7 Zn(2+) ABC transporter - permease subunit compare
PP_1654 -2.1 -2.5 cysteine synthase B compare
PP_3508 -2.1 -2.6 Protein CobW compare
PP_1215 -2.1 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_0274 -2.1 -1.0 putative transcriptional regulator containing HTH domain compare
PP_4364 -2.1 -4.5 putative Anti-sigma F factor antagonist compare
PP_5350 -2.1 -4.5 Transcriptional regulator, RpiR family compare
PP_3506 -2.0 -4.4 Magnesium chelatase, subunit ChII compare
PP_1656 -2.0 -5.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_4829 -2.0 -3.4 putative precorrin-3B synthase compare
PP_5347 -2.0 -11.1 pyruvate carboxylase subunit A compare
PP_4910 -2.0 -1.4 conserved protein of unknown function compare
PP_4504 -2.0 -1.0 conserved exported protein of unknown function compare
PP_4122 -2.0 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0127 -2.0 -9.0 Thiol:disulfide interchange protein compare
PP_4874 -1.9 -1.3 50S ribosomal protein L9 compare
PP_2737 -1.9 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4481 -1.9 -7.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5331 -1.9 -4.0 Long-chain acyl-CoA thioester hydrolase compare
PP_3551 -1.9 -1.4 DNA-binding response regulator, LuxR family compare
PP_5225 -1.9 -1.1 frataxin compare
PP_5346 -1.8 -9.4 pyruvate carboxylase subunit B compare
PP_0995 -1.8 -6.2 conserved membrane protein of unknown function compare
PP_4832 -1.8 -5.0 Precorrin-6x reductase compare
PP_4917 -1.7 -4.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3481 -1.7 -2.0 conserved exported protein of unknown function compare
PP_0809 -1.7 -8.5 disulfide bond formation protein B compare
PP_3507 -1.7 -11.8 Aerobic cobaltochelatase subunit CobN compare
PP_2088 -1.7 -3.9 RNA polymerase sigma factor SigX compare
PP_4824 -1.7 -5.7 Sensor histidine kinase/response regulator compare
PP_0513 -1.7 -1.1 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5348 -1.6 -8.0 Transcriptional regulator, LysR family compare
PP_0164 -1.6 -6.9 conserved protein of unknown function compare
PP_2414 -1.6 -1.3 conserved exported protein of unknown function compare
PP_1217 -1.6 -1.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1380 -1.6 -6.0 3-oxoadipate enol-lactonase 2 compare
PP_0120 -1.6 -5.0 putative zinc ABC transporter compare
PP_1426 -1.6 -9.8 L-aspartate oxidase compare
PP_1677 -1.5 -6.6 Adenosyl-cobyric acid synthase compare
PP_2375 -1.5 -10.3 cobalamin-dependent methionine synthase compare
PP_2390 -1.5 -6.3 Transcriptional regulator, LysR family compare
PP_2439 -1.5 -1.7 peroxiredoxin, alkylhydroperoxide reductase - small subunit compare
PP_4130 -1.4 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5236 -1.4 -7.7 conserved protein of unknown function compare
PP_4223 -1.4 -1.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4004 -1.4 -4.2 DNA translocase FtsK compare
PP_0987 -1.4 -4.0 L-serine dehydratase compare
PP_4826 -1.4 -4.7 Precorrin-3B C17-methyltransferase compare
PP_0118 -1.4 -4.9 zinc import ATP-binding protein compare
PP_0775 -1.4 -1.6 conserved protein of unknown function compare
PP_0339 -1.4 -6.6 Pyruvate dehydrogenase E1 component compare
PP_1672 -1.4 -6.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1681 -1.4 -8.5 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_3102 -1.4 -3.5 conserved protein of unknown function compare
PP_5313 -1.3 -1.6 DNA-binding protein HU-alpha compare
PP_1362 -1.3 -3.7 pyruvate kinase II compare
PP_4895 -1.3 -2.4 tRNA dimethylallyltransferase compare
PP_3649 -1.3 -0.9 Transcriptional regulator, GntR family compare
PP_0856 -1.3 -3.3 conserved lipoprotein of unknown function compare
PP_0368 -1.3 -7.1 putative Acyl-CoA dehydrogenase compare
PP_1675 -1.3 -7.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2337 -1.3 -2.2 aconitate isomerase compare
PP_1428 -1.3 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_1679 -1.3 -2.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1994 -1.3 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_3714 -1.3 -4.7 Muconolactone Delta-isomerase compare
PP_4830 -1.2 -4.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_5329 -1.2 -7.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2302 -1.2 -4.4 DNA-binding, ATP-dependent protease compare
PP_1783 -1.2 -0.8 dTDP-glucose pyrophosphorylase compare
PP_4964 -1.2 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_4098 -1.2 -0.8 UvrABC system protein C compare
PP_1673 -1.2 -4.1 cobyrinate a,c-diamide synthase compare
PP_1676 -1.2 -4.8 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0362 -1.2 -6.2 Biotin synthase compare
PP_1468 -1.2 -2.1 Tyrosine recombinase XerD compare
PP_5309 -1.2 -0.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4265 -1.2 -2.2 DNA-binding transcriptional dual regulator compare
PP_1655 -1.2 -2.6 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0063 -1.2 -2.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2160 -1.2 -3.5 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_2136 -1.1 -3.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5327 -1.1 -6.7 putative phosphate ABC transporter, permease subunit compare
PP_2847 -1.1 -1.0 Urease accessory protein UreJ compare
PP_4227 -1.1 -1.5 conserved protein of unknown function compare
PP_1674 -1.1 -3.1 5,6-dimethylbenzimidazole synthase compare
PP_0319 -1.1 -1.6 conserved protein of unknown function compare
PP_1387 -1.1 -3.9 Probable HTH-type transcriptional regulator TtgR compare
PP_5552 -1.1 -2.0 conserved protein of unknown function compare
PP_2442 -1.1 -1.2 conserved protein of unknown function, DUF480 family compare
PP_4880 -1.1 -3.8 exoribonuclease R compare
PP_0022 -1.1 -0.6 hypothetical protein compare
PP_2029 -1.1 -1.2 von Willebrand factor type A domain protein compare
PP_4827 -1.1 -6.8 Precorrin-2 C(20)-methyltransferase compare
PP_5328 -1.1 -4.5 putative phosphate transport system permease protein compare
PP_3346 -1.1 -2.3 Nickel transporter ATP-binding protein compare
PP_2087 -1.1 -1.0 CmpX protein compare
PP_1198 -1.1 -1.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2631 -1.0 -2.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_5168 -1.0 -1.3 sulfate/thiosulfate import ATP-binding protein compare
PP_1367 -1.0 -4.4 formyltetrahydrofolate hydrolase compare
PP_0719 -1.0 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare


Specific Phenotypes

For 12 genes in this experiment

For nitrogen source Hippuric acid in Pseudomonas putida KT2440

For nitrogen source Hippuric acid across organisms