Experiment set39IT030 for Pseudomonas putida KT2440

Compare to:

Propiolactam nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.4 -10.6 Carbamoyl-phosphate synthase small chain compare
PP_4723 -6.3 -23.7 Carbamoyl-phosphate synthase large chain compare
PP_2088 -5.9 -4.1 RNA polymerase sigma factor SigX compare
PP_0293 -5.5 -3.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -4.3 -3.0 Indole-3-glycerol phosphate synthase compare
PP_4364 -4.3 -3.0 putative Anti-sigma F factor antagonist compare
PP_1079 -4.3 -2.9 Ornithine carbamoyltransferase compare
PP_3511 -4.2 -4.1 Branched-chain-amino-acid aminotransferase compare
PP_1995 -4.1 -2.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5048 -4.1 -2.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1985 -4.1 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_0967 -3.9 -5.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -3.9 -4.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0596 -3.9 -2.7 Omega-amino acid--pyruvate aminotransferase compare
PP_1088 -3.8 -7.3 Argininosuccinate synthase compare
PP_2921 -3.7 -7.6 conserved protein of unknown function compare
PP_3539 -3.7 -3.4 putative Transcriptional regulator compare
PP_0417 -3.7 -9.5 Anthranilate synthase component 1 compare
PP_5047 -3.6 -4.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5097 -3.5 -7.5 homoserine O-acetyltransferase compare
PP_5075 -3.5 -7.5 glutamate synthase (NADPH) beta subunit compare
PP_4678 -3.5 -7.1 Ketol-acid reductoisomerase compare
PP_4680 -3.5 -4.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -3.5 -4.8 3-isopropylmalate dehydrogenase compare
PP_5076 -3.5 -11.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_5098 -3.4 -4.0 methionine biosynthesis protein MetW compare
PP_0966 -3.2 -7.8 Histidinol dehydrogenase compare
PP_5289 -3.2 -2.2 Acetylglutamate kinase compare
PP_0787 -3.2 -3.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1589 -3.1 -5.2 uridylyltransferase compare
PP_2920 -3.1 -5.9 putative nitrogen-containing compound degradation enzyme compare
PP_0597 -3.1 -11.3 methylmalonate-semialdehyde dehydrogenase compare
PP_0362 -3.0 -10.5 Biotin synthase compare
PP_0595 -3.0 -5.1 Transcriptional regulator, LysR family compare
PP_0421 -3.0 -6.7 Anthranilate phosphoribosyltransferase compare
PP_5185 -3.0 -2.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -3.0 -3.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -2.9 -6.8 Transaldolase compare
PP_2001 -2.9 -6.9 O-succinylhomoserine sulfhydrylase compare
PP_4058 -2.8 -5.1 1,4-alpha-glucan branching enzyme compare
PP_5090 -2.8 -1.7 putative cell division protein compare
PP_1233 -2.8 -6.8 sulfurtransferase compare
PP_1468 -2.8 -2.7 Tyrosine recombinase XerD compare
PP_0289 -2.8 -5.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -2.7 -6.7 Dihydroxy-acid dehydratase compare
PP_2919 -2.7 -4.5 Transcriptional regulator, LysR family compare
PP_1986 -2.7 -1.9 3-isopropylmalate dehydratase small subunit compare
PP_2622 -2.7 -2.6 conserved protein of unknown function compare
PP_4700 -2.6 -3.1 pantothenate synthetase compare
PP_5155 -2.6 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5095 -2.6 -4.7 pyrroline-5-carboxylate reductase compare
PP_4890 -2.6 -3.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -2.5 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0276 -2.5 -0.9 Transcriptional regulator, Cro/CI family compare
PP_3505 -2.5 -1.9 conserved protein of unknown function compare
PP_5508 -2.4 -0.9 conserved protein of unknown function compare
PP_1493 -2.4 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2864 -2.4 -2.4 conserved protein of unknown function compare
PP_4999 -2.4 -2.6 dihydroorotase-like protein compare
PP_4679 -2.4 -3.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3806 -2.3 -1.7 Hydrolase, isochorismatase family compare
PP_0365 -2.3 -7.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0184 -2.3 -2.2 Argininosuccinate lyase compare
PP_1269 -2.3 -0.8 Universal stress protein family compare
PP_4909 -2.2 -5.4 phosphoserine phosphatase compare
PP_3241 -2.2 -0.8 conserved exported protein of unknown function compare
PP_0292 -2.2 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0082 -2.1 -1.5 tryptophan synthase alpha chain compare
PP_4994 -2.1 -5.5 conserved protein of unknown function compare
PP_0735 -2.1 -1.1 molybdopterin-synthase adenylyltransferase compare
PP_2327 -2.1 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4984 -2.1 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2031 -2.1 -1.3 conserved protein of unknown function compare
PP_3075 -2.0 -2.4 putative transcriptional regulator compare
PP_0083 -2.0 -1.4 tryptophan synthase beta chain compare
PP_1025 -2.0 -8.3 2-isopropylmalate synthase compare
PP_2414 -2.0 -1.4 conserved exported protein of unknown function compare
PP_2474 -2.0 -1.7 Glutathione S-transferase family protein compare
PP_5495 -2.0 -1.9 protein of unknown function compare
PP_4828 -2.0 -1.1 Precorrin-8X methylmutase compare
PP_0593 -2.0 -0.7 putative ribosome-binding factor compare
PP_5110 -2.0 -1.0 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4701 -1.9 -0.7 glucose-6-phosphate isomerase compare
PP_1231 -1.9 -4.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3999 -1.9 -4.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5654 -1.9 -1.5 putative phosphotriesterase compare
PP_0363 -1.9 -8.4 8-amino-7-oxononanoate synthase compare
PP_5104 -1.9 -5.9 thiazole synthase compare
PP_0366 -1.9 -4.9 dethiobiotin synthetase compare
PP_2655 -1.8 -1.8 conserved protein of unknown function compare
PP_3946 -1.8 -0.9 HTH-type transcriptional repressor NicR compare
PP_1571 -1.8 -2.5 conserved protein of unknown function compare
PP_4699 -1.8 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4196 -1.8 -1.2 conserved exported protein of unknown function compare
PP_0364 -1.8 -8.0 pimeloyl-[acp] methyl ester esterase compare
PP_3484 -1.8 -2.5 Response regulator receiver protein compare
PP_2530 -1.7 -1.1 conserved protein of unknown function compare
PP_0250 -1.7 -1.1 heat shock protein Hsp15 involved in ribosome recycling compare
PP_0339 -1.7 -1.7 Pyruvate dehydrogenase E1 component compare
PP_0291 -1.7 -1.9 conserved protein of unknown function compare
PP_2371 -1.7 -3.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3185 -1.7 -2.4 Pet18 protein compare
PP_0087 -1.7 -1.7 conserved exported protein of unknown function compare
PP_2883 -1.6 -0.9 conserved protein of unknown function compare
PP_5015 -1.6 -2.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1976 -1.6 -3.0 HlyD family secretion protein compare
PP_3043 -1.6 -1.7 conserved protein of unknown function compare
PP_2922 -1.6 -2.3 Urea amidolyase-related protein compare
PP_1326 -1.6 -1.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_3898 -1.6 -2.1 conserved protein of unknown function compare
PP_4844 -1.6 -1.8 putative Urea ABC transporter, ATP-binding protein compare
PP_0986 -1.6 -4.6 aminomethyltransferase compare
PP_2087 -1.6 -1.1 CmpX protein compare
PP_3409 -1.5 -1.6 putative Cobalamin biosynthesis protein cobE compare
PP_0833 -1.5 -1.5 queuine tRNA-ribosyltransferase compare
PP_5313 -1.5 -1.5 DNA-binding protein HU-alpha compare
PP_2348 -1.5 -3.6 Sensor histidine kinase compare
PP_2499 -1.5 -0.8 conserved protein of unknown function compare
PP_3892 -1.5 -0.8 conserved protein of unknown function compare
PP_0914 -1.5 -6.0 GGDEF domain protein compare
PP_4340 -1.5 -1.9 response regulator for chemotactic signal transduction compare
PP_1903 -1.5 -2.4 putative phosphotyrosine-protein phosphatase compare
PP_1898 -1.5 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2737 -1.5 -0.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_t29 -1.5 -1.0 tRNA-Ala compare
PP_4253 -1.4 -2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_0164 -1.4 -4.1 conserved protein of unknown function compare
PP_0978 -1.4 -2.2 conserved protein of unknown function compare
PP_4782 -1.4 -3.3 Phosphomethylpyrimidine kinase compare
PP_2328 -1.4 -2.1 Phosphoadenosine phosphosulfate reductase compare
PP_2580 -1.4 -1.3 conserved protein of unknown function compare
PP_3346 -1.4 -1.9 Nickel transporter ATP-binding protein compare
PP_0380 -1.4 -3.6 Coenzyme PQQ synthesis protein A compare
PP_1774 -1.4 -1.2 conserved exported protein of unknown function compare
PP_1352 -1.4 -3.3 UPF0234 protein PP_1352 compare
PP_4575 -1.4 -3.0 Urea amidolyase-related protein compare
PP_4977 -1.4 -6.8 5,10-methylenetetrahydrofolate reductase compare
PP_4793 -1.4 -2.1 conserved protein of unknown function compare
PP_5347 -1.4 -7.4 pyruvate carboxylase subunit A compare
PP_2625 -1.3 -3.1 conserved exported protein of unknown function compare
PP_3243 -1.3 -1.5 Acetyltransferase, GNAT family compare
PP_3637 -1.3 -2.1 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0855 -1.3 -2.1 conserved protein of unknown function compare
PP_2820 -1.3 -2.5 HTH-type transcriptional regulator nfxB compare
PP_5487 -1.3 -1.9 conserved protein of unknown function compare
PP_3833 -1.3 -3.2 Response regulator compare
PP_4528 -1.3 -0.7 conserved protein of unknown function compare
PP_1053 -1.2 -2.1 Type II secretion pathway protein XcpY compare
PP_5203 -1.2 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
PP_5233 -1.2 -5.0 ammonium transporter AmtB compare
PP_4852 -1.2 -4.7 Transcriptional regulator, AraC family compare
PP_3771 -1.2 -3.2 conserved protein of unknown function compare
PP_0236 -1.2 -1.4 NAD(P)H-dependent FMN reductase subunit compare
PP_1439 -1.2 -1.1 conserved exported protein of unknown function compare
PP_3938 -1.2 -0.9 conserved protein of unknown function compare
PP_2433 -1.2 -1.0 conserved protein of unknown function compare
PP_2848 -1.2 -2.3 urease accessory protein compare
PP_4004 -1.2 -1.4 DNA translocase FtsK compare
PP_2765 -1.2 -1.7 putative Sulfonate monooxygenase MsuD compare
PP_3170 -1.2 -3.2 Transcriptional regulator, LysR family compare
PP_2615 -1.2 -1.1 hemolysin-coregulated protein compare
PP_5017 -1.2 -0.7 Sec-independent protein translocase protein TatB compare
PP_2416 -1.2 -1.8 putative Iron ABC transporter, ATP-binding protein compare
PP_4358 -1.1 -3.8 flagellar synthesis, switching and energizing component compare
PP_4268 -1.1 -0.8 nucleoid-associated broad specificity regulator compare
PP_4102 -1.1 -1.9 conserved protein of unknown function compare
PP_5346 -1.1 -5.5 pyruvate carboxylase subunit B compare
PP_5100 -1.1 -1.5 dITP/XTP pyrophosphatase compare
PP_3754 -1.1 -2.9 Beta-ketothiolase BktB compare
PP_0536 -1.1 -1.7 conserved protein of unknown function compare
PP_4660 -1.1 -1.2 Transcriptional regulator, LysR family compare
PP_4500 -1.1 -2.0 TrpH family protein compare
PP_3179 -1.1 -2.9 Transcriptional regulator, LysR family compare
PP_5270 -1.1 -3.2 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_2768 -1.1 -1.9 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1215 -1.1 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_2302 -1.1 -1.3 DNA-binding, ATP-dependent protease compare
PP_4247 -1.1 -0.5 Exonuclease compare
PP_0740 -1.1 -2.4 Transcriptional regulator, MerR family compare
PP_4515 -1.1 -2.4 Transcriptional regulator, MarR family compare
PP_4223 -1.1 -0.7 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4387 -1.1 -1.9 conserved exported protein of unknown function compare
PP_3866 -1.1 -1.6 conserved protein of unknown function compare
PP_0025 -1.1 -1.4 hypothetical protein compare
PP_2375 -1.1 -5.8 cobalamin-dependent methionine synthase compare
PP_5054 -1.1 -0.7 glutaredoxin 3 compare
PP_t57 -1.0 -3.0 tRNA-Arg compare
PP_5293 -1.0 -2.1 conserved protein of unknown function compare
PP_3726 -1.0 -0.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_3924 -1.0 -1.6 conserved protein of unknown function compare
PP_3603 -1.0 -3.1 Transcriptional regulator, GntR family compare
PP_4830 -1.0 -2.5 precorrin-6Y C(5,15)-methyltransferase compare
PP_0303 -1.0 -1.9 dehydrocarnitine cleavage enzyme compare
PP_1739 -1.0 -1.1 conserved membrane protein of unknown function compare
PP_5714 -1.0 -2.3 conserved protein of unknown function compare
PP_4582 -1.0 -2.0 conserved membrane protein of unknown function compare
PP_4597 -1.0 -2.6 Cyclic pyranopterin monophosphate synthase compare
PP_0916 -1.0 -1.5 Amino acid transporter LysE compare
PP_4349 -1.0 -2.0 conserved protein of unknown function compare
PP_5107 -1.0 -1.4 Monofunctional biosynthetic peptidoglycan transglycosylase compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source 2-Azetidinone in Pseudomonas putida KT2440

For nitrogen source 2-Azetidinone across organisms