Experiment set39IT030 for Pseudomonas putida KT2440

Compare to:

Propiolactam nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PP_1623 +6.9 29.7 RNA polymerase, sigma S (sigma 38) factor compare
PP_2889 +6.9 9.8 putative Transmembrane regulator PrtR compare
PP_1650 +5.3 47.4 Sensor protein GacS compare
PP_4099 +5.2 44.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1428 +4.2 11.4 Sigma factor AlgU negative regulatory protein compare
PP_2245 +3.9 18.1 Transcriptional regulator, Cro/CI family compare
PP_2144 +3.3 7.9 Transcriptional regulator, TetR family compare
PP_0574 +3.2 23.5 DNA-binding response regulator, LuxR family compare
PP_5053 +3.0 11.0 Protein-export protein SecB compare
PP_4171 +3.0 16.1 conserved exported protein of unknown function compare
PP_4386 +2.8 11.1 flagellar basal-body rod protein FlgF compare
PP_4365 +2.7 15.8 Flagellar protein FliJ compare
PP_4355 +2.6 4.4 flagellar export apparatus subunit compare
PP_4390 +2.6 18.7 flagellar basal-body rod protein FlgC compare
PP_4373 +2.6 18.8 Transcriptional regulator FleQ compare
PP_4356 +2.6 7.3 Flagellar protein FliO compare
PP_4385 +2.6 20.3 flagellar basal-body rod protein FlgG compare
PP_4354 +2.5 10.7 flagellar export apparatus subunit compare
PP_4352 +2.5 18.6 flagellin export apparatus, substrate specificity protein compare
PP_1113 +2.4 15.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4388 +2.4 18.5 Flagellar hook protein FlgE compare
PP_4353 +2.4 14.3 Flagellar biosynthetic protein fliR compare
PP_4391 +2.3 13.1 flagellar basal-body rod protein FlgB compare
PP_4389 +2.1 9.5 Flagellar basal-body rod modification protein FlgD compare
PP_2999 +2.1 1.9 Glyoxalase family protein compare
PP_1663 +2.1 12.5 conserved exported protein of unknown function compare
PP_4384 +2.1 12.0 Flagellar L-ring protein compare
PP_0805 +2.0 13.6 Outer membrane efflux protein compare
PP_0804 +2.0 11.5 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4383 +2.0 7.4 Flagellar P-ring protein compare
PP_0806 +2.0 18.0 putative Surface adhesion protein compare
PP_4098 +2.0 2.1 UvrABC system protein C compare
PP_4382 +1.9 7.1 Peptidoglycan hydrolase FlgJ compare
PP_4629 +1.9 10.5 Sensory box protein compare
PP_4361 +1.9 10.9 Flagellar hook-length control protein FliK compare
PP_1055 +1.9 2.0 Type II secretion pathway protein GspN compare
PP_2390 +1.9 11.7 Transcriptional regulator, LysR family compare
PP_4129 +1.9 1.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5706 +1.9 4.1 Sec translocation complex - SecG subunit compare
PP_4344 +1.9 8.7 flagellar export pore protein compare
PP_3481 +1.8 3.1 conserved exported protein of unknown function compare
PP_0803 +1.8 10.5 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4394 +1.8 6.6 flagella basal body P-ring formation protein compare
PP_4367 +1.8 5.9 Flagellar assembly protein FliH compare
PP_1353 +1.8 1.2 conserved membrane protein of unknown function compare
PP_0409 +1.7 6.0 Sensory box histidine kinase compare
PP_4366 +1.7 11.4 flagellum-specific ATP synthase compare
PP_5045 +1.7 5.3 tRNA sulfurtransferase compare
PP_4519 +1.7 12.6 Agglutination protein compare
PP_0166 +1.6 12.1 HlyD family secretion protein compare
PP_4940 +1.6 6.7 Putative glycosyltransferase compare
PP_0168 +1.6 14.1 putative surface adhesion protein compare
PP_0001 +1.6 1.7 probable chromosome-partitioning protein compare
PP_0167 +1.6 13.6 Toxin secretion ATP-binding protein compare
PP_4799 +1.5 1.0 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1733 +1.5 1.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_3248 +1.5 1.0 Dyp-type peroxidase family protein compare
PP_2387 +1.5 2.6 conserved protein of unknown function compare
PP_t12 +1.5 1.0 tRNA-Thr compare
PP_5114 +1.5 1.0 putative adenine methyltransferase compare
PP_5274 +1.4 2.8 conserved protein of unknown function compare
PP_4943 +1.4 2.8 putative Glycosyl transferase compare
PP_0719 +1.4 1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5253 +1.4 2.0 Arylesterase compare
PP_4593 +1.4 1.5 conserved protein of unknown function compare
PP_4396 +1.4 5.2 conserved protein of unknown function compare
PP_3761 +1.4 9.3 Sensor histidine kinase/response regulator compare
PP_3643 +1.4 2.4 putative Oxidoreductase compare
PP_0165 +1.4 11.3 GGDEF domain protein compare
PP_2142 +1.3 2.4 Cell division inhibitor SulA compare
PP_0355 +1.3 2.2 Response regulator compare
PP_1187 +1.3 7.3 sensor protein compare
PP_2403 +1.3 1.4 Chemotaxis protein CheY compare
PP_4959 +1.3 9.8 diguanylate cyclase compare
PP_3935 +1.3 3.4 conserved protein of unknown function compare
PP_1109 +1.3 9.9 Transcriptional regulator, GntR family compare
PP_5311 +1.3 7.9 putative signal transduction protein compare
PP_2389 +1.3 6.1 conserved protein of unknown function compare
PP_5735 +1.3 3.4 conserved hypothetical protein compare
PP_5084 +1.3 8.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4824 +1.3 6.0 Sensor histidine kinase/response regulator compare
PP_4370 +1.3 3.2 Flagellar hook-basal body complex protein FliE compare
PP_4964 +1.3 1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_3365 +1.3 1.3 Acetolactate synthase compare
PP_0960 +1.3 5.3 phospholipid ABC transporter binding protein compare
PP_4136 +1.3 0.9 Transcriptional regulator, LuxR family compare
PP_1734 +1.2 0.9 Probable septum site-determining protein MinC compare
PP_3245 +1.2 1.3 conserved protein of unknown function compare
PP_1804 +1.2 8.2 Glycosyl transferase WbpL compare
PP_4789 +1.2 2.3 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1556 +1.2 3.2 conserved protein of unknown function compare
PP_5491 +1.2 1.9 conserved protein of unknown function with SEC-C motif domain compare
PP_3378 +1.2 1.6 putative 2-ketogluconokinase compare
PP_0905 +1.2 1.4 conserved exported protein of unknown function compare
PP_3837 +1.2 2.6 inner membrane protein of unknown function compare
PP_0958 +1.2 6.5 phospholipid ABC transporter ATP-binding subunit compare
PP_4341 +1.1 5.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5310 +1.1 2.7 junction-specific ATP-dependent DNA helicase compare
PP_0891 +1.1 2.1 conserved exported protein of unknown function compare
PP_4329 +1.1 3.5 FlhB domain protein compare
PP_0232 +1.1 1.0 ATP-binding taurine transporter subunit compare
PP_4363 +1.1 6.6 Sensor histidine kinase/response regulator compare
PP_2243 +1.1 3.1 conserved protein of unknown function compare
PP_1110 +1.1 2.4 serine acetyltransferase compare
PP_3880 +1.1 1.4 conserved exported protein of unknown function compare
PP_0247 +1.1 6.5 Osmolarity sensor protein EnvZ compare
PP_5359 +1.1 2.0 CobW/P47K family protein compare
PP_0959 +1.1 2.2 phospholipid ABC transporter compare
PP_1761 +1.1 7.0 diguanylate cyclase with phosphodiesterase domain compare
PP_2923 +1.1 3.3 conserved protein of unknown function compare
PP_2231 +1.1 1.8 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2214 +1.1 3.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0961 +1.1 5.3 toluene tolerance protein compare
PP_4121 +1.1 1.4 NADH-quinone oxidoreductase subunit C/D compare
PP_4693 +1.1 2.2 RNA polymerase-binding transcription factor DksA compare
PP_5168 +1.0 1.4 sulfate/thiosulfate import ATP-binding protein compare
PP_1568 +1.0 1.0 conserved protein of unknown function compare
PP_4204 +1.0 3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2878 +1.0 1.3 conserved protein of unknown function compare
PP_0620 +1.0 3.2 GntR family transcriptional regulator compare
PP_3831 +1.0 3.3 conserved protein of unknown function compare
PP_3685 +1.0 2.4 conserved protein of unknown function compare
PP_0393 +1.0 0.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0401 +1.0 0.9 Ribosomal RNA small subunit methyltransferase A compare
PP_5008 +1.0 1.3 Poly granule-associated protein compare
PP_1783 +1.0 0.7 dTDP-glucose pyrophosphorylase compare
PP_2388 +1.0 3.8 Transporter, LysE family compare
PP_0508 +1.0 2.2 conserved exported protein of unknown function compare
PP_5198 +1.0 3.0 conserved protein of unknown function compare
PP_4124 +1.0 1.8 NADH-quinone oxidoreductase subunit G compare
PP_4902 +1.0 2.0 Oligoribonuclease compare
PP_2739 +1.0 4.3 putative Sensory box protein compare
PP_1979 +1.0 2.0 putative Hydrolase compare
PP_4997 +1.0 1.0 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_0240 +1.0 1.8 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_5041 +1.0 6.6 glycogen phosphorylase compare
PP_3971 +1.0 0.7 conserved protein of unknown function compare
PP_5085 +1.0 4.7 malic enzyme B compare
PP_3649 +0.9 0.6 Transcriptional regulator, GntR family compare
PP_1062 +0.9 1.3 MutT/nudix family protein compare
PP_4173 +0.9 5.4 Sensor histidine kinase/response regulator compare
PP_3808 +0.9 1.0 Antibiotic synthesis protein MbtH compare
PP_0948 +0.9 2.6 Phosphocarrier protein HPr compare
PP_1087 +0.9 5.0 Outer membrane protein, OmpA family compare
PP_1758 +0.9 4.4 putative sulfurtransferase containing rhodanese-like domain compare
PP_0937 +0.9 5.1 endoribonuclease G (RNAse G) compare
PP_3064 +0.9 1.7 Phage tail protein compare
PP_2640 +0.9 2.6 Acetyltransferase, GNAT family compare
PP_2928 +0.9 5.2 Saccharopine dehydrogenase compare
PP_1364 +0.9 5.4 conserved exported protein of unknown function compare
PP_1697 +0.9 1.5 transcriptional regulator, GntR family compare
PP_3835 +0.9 3.1 Sensory box histidine kinase compare
PP_5309 +0.9 0.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_2127 +0.9 3.5 Sensor histidine kinase compare
PP_5001 +0.9 1.9 protease HslVU, ATPase component compare
PP_3307 +0.9 1.8 conserved protein of unknown function compare
PP_0703 +0.9 2.1 putative Transmembrane sensor compare
PP_4503 +0.9 1.6 DNA-binding response regulator compare
PP_0406 +0.9 3.3 Nucleotidyltransferase family protein compare
PP_1466 +0.9 1.8 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2738 +0.9 4.2 putative Transcriptional regulator compare
PP_1112 +0.9 4.0 conserved membrane protein of unknown function compare
PP_3473 +0.9 2.3 curli secretion and assembly outer membrane associated component compare
PP_2900 +0.9 1.3 conserved protein of unknown function compare
PP_4120 +0.9 1.2 NADH-quinone oxidoreductase subunit B compare
PP_2511 +0.9 1.2 conserved protein of unknown function compare
PP_4726 +0.9 1.5 Chaperone protein DnaJ compare
PP_2965 +0.9 4.9 putative tnpA repressor TnpC compare
PP_0781 +0.9 1.9 conserved protein of unknown function compare
PP_4947 +0.9 6.9 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase compare
PP_5SB +0.9 2.0 5S ribosomal RNA compare
PP_1208 +0.9 2.1 conserved protein of unknown function, SlyX family compare
PP_4262 +0.9 1.7 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4328 +0.9 2.0 conserved protein of unknown function compare
PP_4126 +0.9 0.9 NADH-quinone oxidoreductase subunit I compare
PP_2929 +0.9 5.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2378 +0.9 1.4 Fe/S biogenesis protein NfuA compare
PP_5441 +0.8 1.6 protein of unknown function compare
PP_4848 +0.8 1.6 Curved DNA-binding protein compare
PP_1999 +0.8 1.6 membrane protein required for colicin V production compare
PP_2379 +0.8 2.7 putative cytochrome oxidase biogenesis protein compare
PP_1099 +0.8 1.5 Cold shock protein CapB compare
PP_0123 +0.8 3.2 DNA polymerase I, 5 compare
PP_1554 +0.8 1.9 conserved protein of unknown function compare
PP_2916 +0.8 2.6 riboflavin synthase compare
PP_1210 +0.8 2.5 DNA-binding stress protein compare
PP_4376 +0.8 5.8 flagellar filament capping protein compare
PP_4371 +0.8 4.6 two component system AtoC DNA-binding transcriptional activator compare
PP_2163 +0.8 4.1 VacJ lipoprotein compare
PP_2809 +0.8 1.9 conserved membrane protein of unknown function compare
PP_5322 +0.8 3.0 putative metal ion transporter compare
PP_4296 +0.8 1.0 conserved exported protein of unknown function compare
PP_0607 +0.8 1.5 putative Type IV pili biogenesis protein FimT compare
PP_1022 +0.8 3.2 glucose 6-phosphate-1-dehydrogenase compare
PP_1459 +0.8 2.3 CBS domain protein compare
PP_4348 +0.8 2.6 putative Cystathionine beta-lyase compare
PP_0191 +0.8 1.5 Transcriptional regulatory protein AlgQ compare
PP_3762 +0.8 1.1 Response regulator compare
PP_0007 +0.8 1.1 conserved hypothetical protein compare
PP_2715 +0.8 1.8 ArsH protein compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source 2-Azetidinone in Pseudomonas putida KT2440

For nitrogen source 2-Azetidinone across organisms