Experiment set39IT026 for Pseudomonas putida KT2440

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D-2-Aminobutyric acid nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_4403 -5.0 -7.7 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_5270 -4.7 -5.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4402 -4.7 -10.9 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_4401 -4.7 -10.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_4754 -4.5 -10.8 Transcriptional regulator, TetR family compare
PP_3653 -4.3 -6.6 Transporter, LysE family compare
PP_4404 -4.1 -7.3 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_2211 -3.8 -6.3 Transcriptional regulator, AraC family compare
PP_1015 -3.6 -10.7 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_1016 -3.5 -12.6 mannose/glucose ABC transporter, permease protein compare
PP_2216 -3.1 -8.5 short-chain acyl-CoA dehydrogenase compare
PP_1018 -3.0 -6.2 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0597 -3.0 -10.7 methylmalonate-semialdehyde dehydrogenase compare
PP_1017 -2.9 -7.1 mannose/glucose ABC transporter, permease protein compare
PP_0311 -2.9 -5.8 putative dimethylglycine dehydrogenase subunit compare
PP_5183 -2.8 -5.9 glutamylpolyamine synthetase compare
PP_3596 -2.6 -5.8 D-lysine oxidase compare
PP_1301 -2.6 -5.8 quality control serine endoprotease DegS compare
PP_0310 -2.5 -10.7 putative dimethylglycine dehydrogenase subunit compare
PP_4654 -2.3 -6.2 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_1917 -2.2 -5.4 4-amino-4-deoxychorismate lyase compare
PP_1009 -2.0 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_5426 -2.0 -5.6 conserved protein of unknown function compare
PP_1014 -2.0 -5.7 aldose-ketose isomerase compare
PP_4487 -1.9 -12.1 acetyl-CoA synthetase compare
PP_0400 -1.8 -5.7 CO2+/MG2+ efflux protein compare
PP_2326 -1.8 -5.2 Universal stress protein compare
PP_1505 -1.7 -5.0 Phosphoenolpyruvate carboxylase compare
PP_0353 -1.5 -5.2 Exonuclease compare
PP_5233 -1.4 -5.8 ammonium transporter AmtB compare
PP_0680 -1.3 -7.0 ATP-dependent protease-like protein compare
PP_0672 -1.3 -7.3 Sensory box protein compare
PP_3377 -1.2 -5.5 2-ketogluconate transporter, putative compare
PP_2019 +1.1 5.9 adhesin-associated MmpL efflux pump (from data) compare
PP_4011 +1.1 6.1 isocitrate dehydrogenase, NADP(+)-specific compare
PP_4865 +1.1 5.6 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_0987 +1.2 5.4 L-serine dehydratase compare
PP_4179 +1.2 6.0 Chaperone protein HtpG compare
PP_5103 +1.2 5.3 tRNA (guanine-N(7)-)-methyltransferase compare
PP_4866 +1.2 5.7 High-affinity branched-chain amino acid transport system permease protein BraD compare
PP_4867 +1.4 5.6 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_4850 +1.6 5.2 conserved membrane protein of unknown function compare
PP_3957 +1.7 9.8 choline/carnitine/betaine transporter BetTC compare
PP_4549 +1.7 8.1 long-chain-fatty-acid/CoA ligase compare
PP_4840 +1.7 9.3 D-alanine, beta-alanine, D-serine, glycine permease compare
PP_1140 +1.7 7.9 branched chain amino acid transporter - permease subunit compare
PP_1137 +1.8 6.7 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_1139 +1.8 10.2 branched chain amino acid transporter - permease subunit compare
PP_2683 +1.8 6.0 putative sensory box histidine kinase/response regulator compare
PP_2462 +1.9 5.7 conserved protein of unknown function compare
PP_0973 +2.0 5.5 Nucleoid-associated protein PP_0973 compare
PP_1059 +2.3 11.1 Uncharacterized amino acid permease YtnA compare
PP_2389 +2.3 8.2 conserved protein of unknown function compare
PP_1138 +2.4 6.0 branched chain amino acid transporter - ATP binding subunit compare
PP_4640 +2.8 8.0 conserved protein of unknown function compare
PP_4641 +2.9 14.0 putative transporter compare
PP_1021 +3.0 10.9 DNA-binding transcriptional regulator compare
PP_4776 +6.0 24.3 AsnC family transcriptional regulator compare
PP_3415 +6.2 24.9 Transcriptional regulator, LacI family compare


Specific phenotypes for nitrogen source D-2-Aminobutyric acid across organisms