Experiment set39IT026 for Pseudomonas putida KT2440

Compare to:

D-2-Aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -10.8 -11.6 Carbamoyl-phosphate synthase small chain compare
PP_4723 -10.7 -23.0 Carbamoyl-phosphate synthase large chain compare
PP_1655 -6.8 -10.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5217 -6.8 -20.8 Polyphosphate kinase compare
PP_0293 -6.8 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4999 -6.2 -2.4 dihydroorotase-like protein compare
PP_0965 -6.1 -4.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0967 -5.9 -4.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0691 -5.9 -11.2 Glutamate 5-kinase compare
PP_5104 -5.9 -5.8 thiazole synthase compare
PP_3511 -5.8 -5.6 Branched-chain-amino-acid aminotransferase compare
PP_2245 -5.7 -4.0 Transcriptional regulator, Cro/CI family compare
PP_1079 -5.7 -3.4 Ornithine carbamoyltransferase compare
PP_0422 -5.7 -2.8 Indole-3-glycerol phosphate synthase compare
PP_1088 -5.7 -3.9 Argininosuccinate synthase compare
PP_1872 -5.7 -10.2 glutamate-pyruvate aminotransferase compare
PP_1995 -5.7 -3.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0966 -5.6 -3.9 Histidinol dehydrogenase compare
PP_1985 -5.6 -2.9 3-isopropylmalate dehydratase large subunit compare
PP_1988 -5.5 -3.8 3-isopropylmalate dehydrogenase compare
PP_4678 -5.5 -5.3 Ketol-acid reductoisomerase compare
PP_5076 -5.4 -9.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_4909 -5.3 -3.7 phosphoserine phosphatase compare
PP_2327 -5.3 -6.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0417 -5.3 -10.7 Anthranilate synthase component 1 compare
PP_0420 -5.2 -7.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5075 -5.2 -5.1 glutamate synthase (NADPH) beta subunit compare
PP_4922 -5.2 -10.6 Phosphomethylpyrimidine synthase compare
PP_4680 -5.1 -3.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -5.1 -5.0 Transaldolase compare
PP_1231 -5.1 -3.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4403 -5.0 -7.7 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_5015 -5.0 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3654 -5.0 -3.7 leucine-responsive regulatory protein compare
PP_5097 -4.9 -9.4 homoserine O-acetyltransferase compare
PP_0787 -4.9 -2.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1233 -4.9 -5.0 sulfurtransferase compare
PP_4400 -4.9 -4.8 Bkd operon transcriptional regulator compare
PP_0289 -4.9 -5.8 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -4.9 -4.7 methionine biosynthesis protein MetW compare
PP_4700 -4.8 -3.1 pantothenate synthetase compare
PP_5270 -4.7 -5.0 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4402 -4.7 -10.9 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_4401 -4.7 -10.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_1309 -4.6 -6.5 conserved exported protein of unknown function compare
PP_2088 -4.6 -4.1 RNA polymerase sigma factor SigX compare
PP_0406 -4.6 -7.5 Nucleotidyltransferase family protein compare
PP_5289 -4.6 -2.4 Acetylglutamate kinase compare
PP_4058 -4.6 -5.5 1,4-alpha-glucan branching enzyme compare
PP_0290 -4.6 -3.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2001 -4.5 -7.6 O-succinylhomoserine sulfhydrylase compare
PP_4890 -4.5 -3.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_4754 -4.5 -10.8 Transcriptional regulator, TetR family compare
PP_2215 -4.4 -4.4 acetyl-CoA acetyltransferase compare
PP_1348 -4.4 -5.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3417 -4.3 -2.5 D-gluconate transporter compare
PP_3653 -4.3 -6.6 Transporter, LysE family compare
PP_5048 -4.3 -4.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4710 -4.3 -9.9 tRNA pseudouridine 55 synthase compare
PP_5185 -4.3 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -4.3 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_5090 -4.2 -1.2 putative cell division protein compare
PP_0421 -4.2 -7.5 Anthranilate phosphoribosyltransferase compare
PP_4404 -4.1 -7.3 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_4787 -4.1 -2.0 putative protein with nucleoside triphosphate hydrolase domain compare
PP_2900 -4.0 -1.5 conserved protein of unknown function compare
PP_0937 -4.0 -6.8 endoribonuclease G (RNAse G) compare
PP_1025 -4.0 -14.4 2-isopropylmalate synthase compare
PP_1020 -4.0 -1.9 putative glucose-6-phosphate 1-epimerase compare
PP_4699 -4.0 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1826 -3.9 -1.5 Hydrolase, isochorismatase family compare
PP_5128 -3.9 -7.6 Dihydroxy-acid dehydratase compare
PP_4679 -3.9 -3.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -3.8 -2.6 Nitrogen regulation protein NR(I) compare
PP_4782 -3.8 -3.6 Phosphomethylpyrimidine kinase compare
PP_1012 -3.8 -4.1 DNA-binding response regulator compare
PP_5145 -3.8 -21.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2371 -3.8 -4.3 Sulphite reductase hemoprotein, beta subunit compare
PP_2211 -3.8 -6.3 Transcriptional regulator, AraC family compare
PP_0184 -3.8 -2.6 Argininosuccinate lyase compare
PP_1493 -3.7 -2.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1015 -3.6 -10.7 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5508 -3.6 -0.6 conserved protein of unknown function compare
PP_3999 -3.6 -6.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3662 -3.5 -7.4 conserved protein of unknown function compare
PP_1016 -3.5 -12.6 mannose/glucose ABC transporter, permease protein compare
PP_1062 -3.5 -1.2 MutT/nudix family protein compare
PP_4364 -3.5 -3.8 putative Anti-sigma F factor antagonist compare
PP_0082 -3.5 -2.4 tryptophan synthase alpha chain compare
PP_0980 -3.4 -7.3 Probable cytosol aminopeptidase compare
PP_0083 -3.4 -2.3 tryptophan synthase beta chain compare
PP_3241 -3.4 -0.6 conserved exported protein of unknown function compare
PP_0232 -3.4 -0.6 ATP-binding taurine transporter subunit compare
PP_2581 -3.4 -0.8 conserved protein of unknown function compare
PP_5227 -3.4 -7.9 diaminopimelate decarboxylase compare
PP_0022 -3.3 -0.6 hypothetical protein compare
PP_4803 -3.3 -6.6 D-alanyl-D-alanine carboxypeptidase compare
PP_2820 -3.2 -1.7 HTH-type transcriptional regulator nfxB compare
PP_5155 -3.2 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_3590 -3.2 -7.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_2899 -3.2 -0.8 conserved exported protein of unknown function compare
PP_3938 -3.2 -0.8 conserved protein of unknown function compare
PP_5216 -3.2 -4.6 exopolyphosphatase compare
PP_5350 -3.2 -4.1 Transcriptional regulator, RpiR family compare
PP_5610 -3.2 -0.8 protein of unknown function compare
PP_2328 -3.1 -6.0 Phosphoadenosine phosphosulfate reductase compare
PP_2414 -3.1 -2.8 conserved exported protein of unknown function compare
PP_0735 -3.1 -0.8 molybdopterin-synthase adenylyltransferase compare
PP_5241 -3.1 -1.3 DNA-binding response regulator, LuxR family compare
PP_2216 -3.1 -8.5 short-chain acyl-CoA dehydrogenase compare
PP_5346 -3.1 -12.0 pyruvate carboxylase subunit B compare
PP_1018 -3.0 -6.2 mannose/glucose ABC transporter - ATP binding subunit compare
PP_5347 -3.0 -13.3 pyruvate carboxylase subunit A compare
PP_0292 -3.0 -1.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1697 -3.0 -1.4 transcriptional regulator, GntR family compare
PP_0597 -3.0 -10.7 methylmalonate-semialdehyde dehydrogenase compare
PP_1764 -3.0 -8.3 Phosphoglycolate phosphatase 2 compare
PP_4682 -3.0 -4.3 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_4785 -3.0 -3.5 conserved exported protein of unknown function compare
PP_5095 -2.9 -3.7 pyrroline-5-carboxylate reductase compare
PP_1017 -2.9 -7.1 mannose/glucose ABC transporter, permease protein compare
PP_5110 -2.9 -0.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_0311 -2.9 -5.8 putative dimethylglycine dehydrogenase subunit compare
PP_5267 -2.9 -1.0 putative cytochrome c5 compare
PP_4642 -2.9 -0.5 Cyclic diguanosine monophosphate-binding protein compare
PP_5146 -2.8 -6.1 RNA pyrophosphohydrolase compare
PP_5047 -2.8 -5.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5313 -2.8 -1.4 DNA-binding protein HU-alpha compare
PP_4952 -2.8 -0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5572 -2.8 -2.4 protein of unknown function compare
PP_5183 -2.8 -5.9 glutamylpolyamine synthetase compare
PP_1553 -2.8 -2.1 conserved protein of unknown function compare
PP_5014 -2.7 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1041 -2.7 -0.7 twin arginine protein export complex subunit compare
PP_1011 -2.7 -9.2 glucokinase compare
PP_2214 -2.7 -3.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1598 -2.7 -5.6 regulatory intramembrane protein RIP zinc protease compare
PP_2087 -2.7 -1.7 CmpX protein compare
PP_0313 -2.7 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_5621 -2.6 -1.1 protein of unknown function compare
PP_0312 -2.6 -4.6 electron transfer flavoprotein, alpha subunit compare
PP_2031 -2.6 -1.0 conserved protein of unknown function compare
PP_2737 -2.6 -0.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3596 -2.6 -5.8 D-lysine oxidase compare
PP_1301 -2.6 -5.8 quality control serine endoprotease DegS compare
PP_1362 -2.6 -1.6 pyruvate kinase II compare
PP_2668 -2.6 -1.5 ABC efflux transporter, ATP-binding protein compare
PP_2334 -2.6 -4.4 2-methylisocitrate lyase compare
PP_0949 -2.6 -4.7 putative ATP-binding protein UPF0042 compare
PP_3110 -2.6 -1.2 protein of unknown function compare
PP_2000 -2.5 -1.5 amidophosphoribosyl transferase compare
PP_1013 -2.5 -4.6 Sensor histidine kinase compare
PP_3790 -2.5 -8.8 diaminopimelate epimerase compare
PP_0340 -2.5 -8.8 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0310 -2.5 -10.7 putative dimethylglycine dehydrogenase subunit compare
PP_1224 -2.5 -4.3 periplasmic subunit of the TolQRA transport system compare
PP_1656 -2.5 -4.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_1568 -2.5 -0.6 conserved protein of unknown function compare
PP_4961 -2.5 -0.8 putative Lipoprotein compare
PP_5348 -2.5 -8.3 Transcriptional regulator, LysR family compare
PP_2029 -2.4 -0.9 von Willebrand factor type A domain protein compare
PP_2337 -2.4 -1.2 aconitate isomerase compare
PP_4008 -2.4 -6.6 ATP-dependent serine protease compare
PP_3806 -2.4 -1.4 Hydrolase, isochorismatase family compare
PP_5393 -2.3 -0.6 putative metal-binding chaperone compare
PP_0185 -2.3 -6.5 Positive alginate biosynthesis regulatory protein compare
PP_4654 -2.3 -6.2 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_2107 -2.3 -1.3 conserved protein of unknown function compare
PP_4870 -2.3 -1.7 Azurin compare
PP_4342 -2.3 -1.9 flagellar synthesis regulator, putative ATPase compare
PP_5045 -2.2 -4.2 tRNA sulfurtransferase compare
PP_0878 -2.2 -4.6 dipeptide ABC transporter, binding subunit compare
PP_4734 -2.2 -8.4 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4143 -2.2 -2.7 conserved protein of unknown function compare
PP_1917 -2.2 -5.4 4-amino-4-deoxychorismate lyase compare
PP_0852 -2.2 -1.4 Transcriptional regulator, Cro/CI family compare
PP_5085 -2.2 -6.8 malic enzyme B compare
PP_0856 -2.2 -2.5 conserved lipoprotein of unknown function compare
PP_0152 -2.1 -1.1 conserved exported protein of unknown function compare
PP_4911 -2.1 -2.5 conserved protein of unknown function compare
PP_2217 -2.1 -3.0 enoyl-CoA hydratase compare
PP_2402 -2.1 -1.0 putative Sensor histidine kinase compare
PP_3726 -2.1 -0.5 Enoyl-CoA hydratase/isomerase family protein compare
PP_4593 -2.1 -0.5 conserved protein of unknown function compare
PP_3971 -2.1 -1.0 conserved protein of unknown function compare
PP_3239 -2.1 -0.9 putative cointegrate resolution protein T Tn4652 compare
PP_0120 -2.1 -5.6 putative zinc ABC transporter compare
PP_1009 -2.0 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
PP_3967 -2.0 -1.8 MutT/nudix family protein compare
PP_2555 -2.0 -2.4 conserved protein of unknown function compare
PP_1994 -2.0 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_5426 -2.0 -5.6 conserved protein of unknown function compare
PP_0948 -2.0 -1.5 Phosphocarrier protein HPr compare
PP_1014 -2.0 -5.7 aldose-ketose isomerase compare
PP_1427 -1.9 -4.5 RNA polymerase sigma E factor compare
PP_4487 -1.9 -12.1 acetyl-CoA synthetase compare
PP_1650 -1.9 -12.2 Sensor protein GacS compare
PP_4099 -1.9 -12.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0276 -1.9 -0.5 Transcriptional regulator, Cro/CI family compare
PP_5705 -1.9 -0.9 protein of unknown function compare


Specific Phenotypes

For 59 genes in this experiment

For nitrogen source D-2-Aminobutyric acid in Pseudomonas putida KT2440

For nitrogen source D-2-Aminobutyric acid across organisms