Experiment set39IT025 for Pseudomonas putida KT2440

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D-2-Aminobutyric acid nitrogen source

Genes with specific phenotypes:

  gene name fitness t score description  
PP_2245 -5.7 -5.2 Transcriptional regulator, Cro/CI family compare
PP_3653 -4.9 -6.3 Transporter, LysE family compare
PP_1013 -4.7 -6.8 Sensor histidine kinase compare
PP_4401 -4.6 -9.8 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_4754 -4.6 -9.0 Transcriptional regulator, TetR family compare
PP_5270 -4.4 -6.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4403 -4.3 -9.2 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_4404 -4.1 -9.7 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_4402 -3.8 -9.9 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_1012 -3.6 -6.5 DNA-binding response regulator compare
PP_1015 -3.6 -7.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_0312 -3.4 -6.0 electron transfer flavoprotein, alpha subunit compare
PP_1016 -3.4 -10.5 mannose/glucose ABC transporter, permease protein compare
PP_1018 -3.3 -5.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_2216 -3.1 -10.0 short-chain acyl-CoA dehydrogenase compare
PP_0597 -3.0 -11.5 methylmalonate-semialdehyde dehydrogenase compare
PP_2211 -3.0 -5.5 Transcriptional regulator, AraC family compare
PP_1017 -2.8 -6.9 mannose/glucose ABC transporter, permease protein compare
PP_4654 -2.8 -9.4 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_0310 -2.4 -10.6 putative dimethylglycine dehydrogenase subunit compare
PP_5233 -2.3 -8.2 ammonium transporter AmtB compare
PP_0887 -2.1 -7.1 Sensor histidine kinase compare
PP_1505 -2.1 -7.9 Phosphoenolpyruvate carboxylase compare
PP_1301 -2.1 -5.0 quality control serine endoprotease DegS compare
PP_4487 -1.9 -11.6 acetyl-CoA synthetase compare
PP_2213 -1.7 -5.4 putative acyl-CoA synthetase compare
PP_3377 -1.5 -6.8 2-ketogluconate transporter, putative compare
PP_0672 -1.5 -7.6 Sensory box protein compare
PP_0680 -1.5 -7.2 ATP-dependent protease-like protein compare
PP_0163 +1.1 5.4 putative transcriptional regulator compare
PP_4756 +1.2 5.2 gamma-aminobutyrate permease compare
PP_5103 +1.2 5.0 tRNA (guanine-N(7)-)-methyltransferase compare
PP_4179 +1.3 6.1 Chaperone protein HtpG compare
PP_2019 +1.3 7.4 adhesin-associated MmpL efflux pump (from data) compare
PP_4865 +1.3 5.6 High-affinity branched-chain amino acid transport system permease protein BraE compare
PP_4867 +1.4 5.7 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) compare
PP_4549 +1.4 7.0 long-chain-fatty-acid/CoA ligase compare
PP_4866 +1.4 6.2 High-affinity branched-chain amino acid transport system permease protein BraD compare
PP_5283 +1.4 6.0 periplasmic dipeptide transport protein compare
PP_1139 +1.4 8.2 branched chain amino acid transporter - permease subunit compare
PP_4840 +1.5 6.5 D-alanine, beta-alanine, D-serine, glycine permease compare
PP_0298 +1.6 5.9 AraC-family transcriptional regulator compare
PP_1141 +1.6 6.1 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_3957 +1.6 10.2 choline/carnitine/betaine transporter BetTC compare
PP_4864 +1.6 7.8 High-affinity branched-chain amino acid transport ATP-binding protein BraF compare
PP_1140 +1.8 8.3 branched chain amino acid transporter - permease subunit compare
PP_1137 +2.1 7.9 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_1059 +2.1 9.7 Uncharacterized amino acid permease YtnA compare
PP_2389 +2.1 7.7 conserved protein of unknown function compare
PP_4640 +2.6 7.6 conserved protein of unknown function compare
PP_1021 +3.0 9.1 DNA-binding transcriptional regulator compare
PP_4641 +3.1 16.7 putative transporter compare
PP_3415 +6.0 22.1 Transcriptional regulator, LacI family compare
PP_4776 +6.1 29.7 AsnC family transcriptional regulator compare


Specific phenotypes for nitrogen source D-2-Aminobutyric acid across organisms