Experiment set39IT025 for Pseudomonas putida KT2440

Compare to:

D-2-Aminobutyric acid nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4724 -12.3 -7.5 Carbamoyl-phosphate synthase small chain compare
PP_4723 -11.1 -22.6 Carbamoyl-phosphate synthase large chain compare
PP_0293 -7.0 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5217 -7.0 -20.2 Polyphosphate kinase compare
PP_4999 -6.4 -2.3 dihydroorotase-like protein compare
PP_1020 -6.3 -1.7 putative glucose-6-phosphate 1-epimerase compare
PP_5104 -6.3 -4.3 thiazole synthase compare
PP_0967 -6.2 -4.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0965 -6.1 -6.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -6.1 -5.5 Branched-chain-amino-acid aminotransferase compare
PP_0691 -6.0 -12.1 Glutamate 5-kinase compare
PP_0787 -5.9 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1079 -5.9 -3.3 Ornithine carbamoyltransferase compare
PP_4400 -5.8 -3.3 Bkd operon transcriptional regulator compare
PP_1872 -5.8 -11.2 glutamate-pyruvate aminotransferase compare
PP_1995 -5.8 -4.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1088 -5.8 -5.6 Argininosuccinate synthase compare
PP_0966 -5.7 -5.6 Histidinol dehydrogenase compare
PP_1985 -5.7 -2.8 3-isopropylmalate dehydratase large subunit compare
PP_1309 -5.7 -6.2 conserved exported protein of unknown function compare
PP_3654 -5.7 -2.9 leucine-responsive regulatory protein compare
PP_1233 -5.7 -4.2 sulfurtransferase compare
PP_5076 -5.7 -7.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_1655 -5.7 -7.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1988 -5.7 -3.9 3-isopropylmalate dehydrogenase compare
PP_2245 -5.7 -5.2 Transcriptional regulator, Cro/CI family compare
PP_0420 -5.6 -5.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -5.4 -5.3 phosphoserine phosphatase compare
PP_2168 -5.4 -3.7 Transaldolase compare
PP_5075 -5.4 -6.4 glutamate synthase (NADPH) beta subunit compare
PP_5097 -5.4 -8.2 homoserine O-acetyltransferase compare
PP_0422 -5.3 -4.2 Indole-3-glycerol phosphate synthase compare
PP_0417 -5.2 -15.5 Anthranilate synthase component 1 compare
PP_2001 -5.2 -9.3 O-succinylhomoserine sulfhydrylase compare
PP_4680 -5.2 -5.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -5.2 -10.5 Ketol-acid reductoisomerase compare
PP_4922 -5.0 -12.2 Phosphomethylpyrimidine synthase compare
PP_4700 -5.0 -3.0 pantothenate synthetase compare
PP_1231 -5.0 -3.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3653 -4.9 -6.3 Transporter, LysE family compare
PP_0289 -4.9 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_1348 -4.9 -5.6 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_5098 -4.8 -6.6 methionine biosynthesis protein MetW compare
PP_4058 -4.8 -5.7 1,4-alpha-glucan branching enzyme compare
PP_5289 -4.8 -2.3 Acetylglutamate kinase compare
PP_0290 -4.7 -3.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2327 -4.7 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1013 -4.7 -6.8 Sensor histidine kinase compare
PP_2433 -4.7 -1.3 conserved protein of unknown function compare
PP_5185 -4.6 -4.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0937 -4.6 -7.6 endoribonuclease G (RNAse G) compare
PP_4401 -4.6 -9.8 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_4754 -4.6 -9.0 Transcriptional regulator, TetR family compare
PP_3417 -4.6 -2.5 D-gluconate transporter compare
PP_0406 -4.5 -7.9 Nucleotidyltransferase family protein compare
PP_5128 -4.5 -9.7 Dihydroxy-acid dehydratase compare
PP_4679 -4.5 -2.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3481 -4.5 -1.3 conserved exported protein of unknown function compare
PP_5015 -4.5 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1224 -4.5 -4.1 periplasmic subunit of the TolQRA transport system compare
PP_4787 -4.4 -2.4 putative protein with nucleoside triphosphate hydrolase domain compare
PP_5090 -4.4 -1.2 putative cell division protein compare
PP_1986 -4.4 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_4782 -4.4 -2.1 Phosphomethylpyrimidine kinase compare
PP_5270 -4.4 -6.7 D-amino-acid:quinone oxidoreductase (deaminating) compare
PP_4403 -4.3 -9.2 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_5225 -4.2 -0.7 frataxin compare
PP_2088 -4.2 -3.7 RNA polymerase sigma factor SigX compare
PP_4890 -4.1 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4404 -4.1 -9.7 dihydrolipoyl dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_0421 -4.1 -7.3 Anthranilate phosphoribosyltransferase compare
PP_1025 -4.0 -11.4 2-isopropylmalate synthase compare
PP_4696 -4.0 -2.7 Nitrogen regulation protein NR(I) compare
PP_0184 -4.0 -2.7 Argininosuccinate lyase compare
PP_1826 -3.9 -2.0 Hydrolase, isochorismatase family compare
PP_5048 -3.9 -4.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2371 -3.9 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4402 -3.8 -9.9 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_5095 -3.8 -3.9 pyrroline-5-carboxylate reductase compare
PP_5227 -3.8 -9.2 diaminopimelate decarboxylase compare
PP_5350 -3.8 -4.7 Transcriptional regulator, RpiR family compare
PP_3806 -3.8 -1.7 Hydrolase, isochorismatase family compare
PP_2031 -3.8 -1.1 conserved protein of unknown function compare
PP_4699 -3.8 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2215 -3.8 -3.6 acetyl-CoA acetyltransferase compare
PP_0082 -3.7 -2.6 tryptophan synthase alpha chain compare
PP_5508 -3.7 -0.6 conserved protein of unknown function compare
PP_5146 -3.7 -10.7 RNA pyrophosphohydrolase compare
PP_0980 -3.6 -8.4 Probable cytosol aminopeptidase compare
PP_1012 -3.6 -6.5 DNA-binding response regulator compare
PP_0083 -3.6 -2.5 tryptophan synthase beta chain compare
PP_4785 -3.6 -6.0 conserved exported protein of unknown function compare
PP_5145 -3.6 -23.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1015 -3.6 -7.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_5047 -3.6 -5.4 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5191 -3.5 -1.8 conserved exported protein of unknown function compare
PP_3999 -3.5 -8.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2581 -3.5 -0.8 conserved protein of unknown function compare
PP_3906 -3.5 -1.9 conserved protein of unknown function compare
PP_2820 -3.5 -1.2 HTH-type transcriptional regulator nfxB compare
PP_0312 -3.4 -6.0 electron transfer flavoprotein, alpha subunit compare
PP_1016 -3.4 -10.5 mannose/glucose ABC transporter, permease protein compare
PP_1011 -3.4 -10.7 glucokinase compare
PP_1018 -3.3 -5.4 mannose/glucose ABC transporter - ATP binding subunit compare
PP_4681 -3.3 -1.6 conserved protein of unknown function compare
PP_0735 -3.3 -0.8 molybdopterin-synthase adenylyltransferase compare
PP_1038 -3.3 -0.8 conserved protein of unknown function compare
PP_1697 -3.3 -1.4 transcriptional regulator, GntR family compare
PP_0833 -3.2 -2.0 queuine tRNA-ribosyltransferase compare
PP_5347 -3.2 -13.0 pyruvate carboxylase subunit A compare
PP_5528 -3.2 -1.0 conserved protein of unknown function compare
PP_2214 -3.2 -3.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1656 -3.2 -5.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_0292 -3.2 -1.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0852 -3.1 -1.4 Transcriptional regulator, Cro/CI family compare
PP_4504 -3.1 -0.7 conserved exported protein of unknown function compare
PP_3790 -3.1 -12.3 diaminopimelate epimerase compare
PP_2555 -3.1 -2.9 conserved protein of unknown function compare
PP_2216 -3.1 -10.0 short-chain acyl-CoA dehydrogenase compare
PP_0593 -3.1 -0.5 putative ribosome-binding factor compare
PP_3392 -3.1 -0.7 conserved protein of unknown function compare
PP_2334 -3.1 -6.0 2-methylisocitrate lyase compare
PP_2328 -3.1 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_4803 -3.1 -7.0 D-alanyl-D-alanine carboxypeptidase compare
PP_1439 -3.1 -1.0 conserved exported protein of unknown function compare
PP_2370 -3.1 -1.2 conserved protein of unknown function compare
PP_4710 -3.0 -6.6 tRNA pseudouridine 55 synthase compare
PP_5295 -3.0 -1.5 conserved protein of unknown function compare
PP_0597 -3.0 -11.5 methylmalonate-semialdehyde dehydrogenase compare
PP_3647 -3.0 -2.3 putative Oxidoreductase compare
PP_2211 -3.0 -5.5 Transcriptional regulator, AraC family compare
PP_5346 -2.9 -14.2 pyruvate carboxylase subunit B compare
PP_3662 -2.9 -7.5 conserved protein of unknown function compare
PP_1054 -2.9 -1.1 Type II secretion pathway protein XcpZ compare
PP_5014 -2.9 -1.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_4911 -2.8 -3.9 conserved protein of unknown function compare
PP_1017 -2.8 -6.9 mannose/glucose ABC transporter, permease protein compare
PP_1041 -2.8 -0.6 twin arginine protein export complex subunit compare
PP_4143 -2.8 -4.3 conserved protein of unknown function compare
PP_1362 -2.8 -1.7 pyruvate kinase II compare
PP_1764 -2.8 -5.9 Phosphoglycolate phosphatase 2 compare
PP_4654 -2.8 -9.4 tRNA/tmRNA (uracil-C(5))-methyltransferase compare
PP_2655 -2.8 -1.5 conserved protein of unknown function compare
PP_0319 -2.7 -1.1 conserved protein of unknown function compare
PP_2737 -2.7 -0.6 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1215 -2.7 -0.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_3098 -2.7 -1.0 conserved protein of unknown function compare
PP_0313 -2.7 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_1293 -2.7 -0.6 molybdopterin synthase small subunit compare
PP_5155 -2.7 -2.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2337 -2.7 -1.2 aconitate isomerase compare
PP_3522 -2.6 -2.1 conserved protein of unknown function compare
PP_2000 -2.6 -1.5 amidophosphoribosyl transferase compare
PP_2348 -2.6 -4.6 Sensor histidine kinase compare
PP_4364 -2.6 -2.3 putative Anti-sigma F factor antagonist compare
PP_5054 -2.5 -1.0 glutaredoxin 3 compare
PP_t12 -2.5 -0.4 tRNA-Thr compare
PP_2029 -2.5 -0.9 von Willebrand factor type A domain protein compare
PP_2335 -2.5 -10.3 methylcitrate synthase compare
PP_2740 -2.5 -1.8 Transcriptional regulator, MerR family compare
PP_3596 -2.5 -4.8 D-lysine oxidase compare
PP_1912 -2.5 -6.6 Phosphate acyltransferase compare
PP_1366 -2.5 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_4581 -2.5 -1.3 putative amidotransferase compare
PP_0310 -2.4 -10.6 putative dimethylglycine dehydrogenase subunit compare
PP_4528 -2.4 -0.6 conserved protein of unknown function compare
PP_5313 -2.4 -1.3 DNA-binding protein HU-alpha compare
PP_1774 -2.4 -1.1 conserved exported protein of unknown function compare
PP_1742 -2.4 -1.8 conserved inner membrane protein of unknown function compare
PP_5007 -2.4 -2.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2402 -2.3 -1.0 putative Sensor histidine kinase compare
PP_3378 -2.3 -0.7 putative 2-ketogluconokinase compare
PP_0120 -2.3 -5.4 putative zinc ABC transporter compare
PP_3539 -2.3 -1.8 putative Transcriptional regulator compare
PP_5183 -2.3 -4.0 glutamylpolyamine synthetase compare
PP_5572 -2.3 -2.6 protein of unknown function compare
PP_3874 -2.3 -1.7 conserved protein of unknown function compare
PP_0949 -2.3 -4.0 putative ATP-binding protein UPF0042 compare
PP_5233 -2.3 -8.2 ammonium transporter AmtB compare
PP_1364 -2.3 -8.1 conserved exported protein of unknown function compare
PP_4247 -2.3 -0.5 Exonuclease compare
PP_5348 -2.3 -9.1 Transcriptional regulator, LysR family compare
PP_5008 -2.2 -0.7 Poly granule-associated protein compare
PP_5216 -2.2 -4.2 exopolyphosphatase compare
PP_5085 -2.2 -7.0 malic enzyme B compare
PP_4895 -2.2 -1.5 tRNA dimethylallyltransferase compare
PP_1142 -2.2 -0.9 conserved protein of unknown function compare
PP_4593 -2.2 -0.5 conserved protein of unknown function compare
PP_4008 -2.2 -4.5 ATP-dependent serine protease compare
PP_3380 -2.1 -3.1 2-ketogluconate utilization repressor compare
PP_0887 -2.1 -7.1 Sensor histidine kinase compare
PP_0126 -2.1 -2.1 Cytochrome c4 compare
PP_3197 -2.1 -2.2 Glyoxalase family protein compare
PP_3590 -2.1 -5.4 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1505 -2.1 -7.9 Phosphoenolpyruvate carboxylase compare
PP_1994 -2.1 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_4734 -2.1 -8.9 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0356 -2.1 -4.4 malate synthase G compare
PP_1301 -2.1 -5.0 quality control serine endoprotease DegS compare
PP_1828 -2.0 -2.7 conserved protein of unknown function compare


Specific Phenotypes

For 54 genes in this experiment

For nitrogen source D-2-Aminobutyric acid in Pseudomonas putida KT2440

For nitrogen source D-2-Aminobutyric acid across organisms