Experiment set38IT060 for Pseudomonas putida KT2440

Compare to:

R2A control with 0.2% methanol

200 most important genes:

  gene name fitness t score description  
PP_0856 -5.7 -5.5 conserved lipoprotein of unknown function compare
PP_0846 -4.9 -3.3 DnaK-like molecular chaperone specific for IscU compare
PP_4799 -4.9 -3.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1654 -3.9 -2.7 cysteine synthase B compare
PP_0691 -3.8 -4.4 Glutamate 5-kinase compare
PP_5095 -3.5 -2.9 pyrroline-5-carboxylate reductase compare
PP_4999 -3.5 -2.4 dihydroorotase-like protein compare
PP_4700 -3.2 -4.9 pantothenate synthetase compare
PP_4723 -3.1 -2.1 Carbamoyl-phosphate synthase large chain compare
PP_4943 -3.0 -3.1 putative Glycosyl transferase compare
PP_4265 -3.0 -4.0 DNA-binding transcriptional dual regulator compare
PP_4693 -2.7 -5.4 RNA polymerase-binding transcription factor DksA compare
PP_1186 -2.7 -3.4 two component system DNA-binding transcriptional dual regulator compare
PP_4560 -2.7 -6.1 putative Ribonuclease BN compare
PP_0164 -2.7 -6.5 conserved protein of unknown function compare
PP_4724 -2.5 -4.1 Carbamoyl-phosphate synthase small chain compare
PP_1237 -2.3 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1232 -2.2 -8.1 conserved exported protein of unknown function compare
PP_1734 -2.2 -6.0 Probable septum site-determining protein MinC compare
PP_0855 -2.1 -2.9 conserved protein of unknown function compare
PP_4936 -2.0 -6.8 O-antigen polymerase compare
PP_4902 -2.0 -3.3 Oligoribonuclease compare
PP_3946 -2.0 -1.8 HTH-type transcriptional repressor NicR compare
PP_5328 -1.9 -2.9 putative phosphate transport system permease protein compare
PP_1055 -1.9 -2.6 Type II secretion pathway protein GspN compare
PP_2088 -1.8 -3.5 RNA polymerase sigma factor SigX compare
PP_2402 -1.8 -2.9 putative Sensor histidine kinase compare
PP_0339 -1.8 -2.1 Pyruvate dehydrogenase E1 component compare
PP_4938 -1.7 -7.3 putative Glycosyl transferase compare
PP_4696 -1.7 -4.0 Nitrogen regulation protein NR(I) compare
PP_4561 -1.7 -1.4 stress response protein compare
PP_4204 -1.7 -3.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0833 -1.7 -2.3 queuine tRNA-ribosyltransferase compare
PP_1428 -1.6 -2.9 Sigma factor AlgU negative regulatory protein compare
PP_0719 -1.6 -1.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0127 -1.6 -3.2 Thiol:disulfide interchange protein compare
PP_1000 -1.6 -4.6 ornithine carbamoyltransferase, catabolic compare
PP_1215 -1.6 -3.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_5329 -1.6 -2.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4895 -1.5 -3.3 tRNA dimethylallyltransferase compare
PP_0809 -1.5 -7.3 disulfide bond formation protein B compare
PP_0999 -1.5 -4.9 carbamate kinase compare
PP_1994 -1.5 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_5090 -1.5 -1.9 putative cell division protein compare
PP_4126 -1.5 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_1001 -1.4 -2.4 arginine deiminase compare
PP_3637 -1.4 -1.6 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1664 -1.4 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_1898 -1.3 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1002 -1.3 -4.2 arginine/ornithine antiporter compare
PP_0393 -1.3 -2.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0206 -1.3 -3.2 Ferredoxin, 4Fe-4S compare
PP_2322 -1.3 -3.6 Major outer membrane lipoprotein compare
PP_4008 -1.2 -4.7 ATP-dependent serine protease compare
PP_4804 -1.2 -2.3 RlpA-like lipoprotein compare
PP_4874 -1.2 -1.2 50S ribosomal protein L9 compare
PP_4828 -1.2 -1.2 Precorrin-8X methylmutase compare
PP_4726 -1.2 -1.5 Chaperone protein DnaJ compare
PP_1362 -1.1 -2.7 pyruvate kinase II compare
PP_5028 -1.1 -2.2 proline iminopeptidase compare
PP_1987 -1.1 -2.1 Methlytransferase, UbiE/COQ5 family compare
PP_5054 -1.1 -2.0 glutaredoxin 3 compare
PP_2510 -1.1 -1.9 conserved protein of unknown function compare
PP_4961 -1.1 -1.0 putative Lipoprotein compare
PP_1702 -1.1 -3.8 Recombination-associated protein RdgC compare
PP_1208 -1.1 -2.8 conserved protein of unknown function, SlyX family compare
PP_4342 -1.1 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_2336 -1.1 -3.0 aconitate hydratase 1 compare
PP_0998 -1.0 -4.0 conserved protein of unknown function compare
PP_5552 -1.0 -2.3 conserved protein of unknown function compare
PP_4940 -1.0 -4.5 Putative glycosyltransferase compare
PP_1353 -1.0 -2.2 conserved membrane protein of unknown function compare
PP_3447 -1.0 -1.2 conserved membrane protein of unknown function compare
PP_4121 -1.0 -3.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1763 -1.0 -2.2 putative oxidoreductase compare
PP_5313 -1.0 -2.6 DNA-binding protein HU-alpha compare
PP_4546 -1.0 -3.4 ATP-dependent helicase HrpA compare
PP_5216 -1.0 -2.0 exopolyphosphatase compare
PP_1238 -1.0 -4.2 putative Lipoprotein compare
PP_0832 -1.0 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5248 -1.0 -1.7 putative hydrolase compare
PP_3474 -1.0 -2.5 putative Curli fiber protein CsgE compare
PP_2433 -1.0 -2.3 conserved protein of unknown function compare
PP_0195 -1.0 -2.1 conserved protein of unknown function compare
PP_0735 -1.0 -1.8 molybdopterin-synthase adenylyltransferase compare
PP_0972 -1.0 -3.4 UPF0213 protein PP_0972 compare
PP_4875 -1.0 -2.6 conserved membrane protein of unknown function compare
PP_1553 -1.0 -1.2 conserved protein of unknown function compare
PP_5609 -1.0 -1.5 conserved protein of unknown function compare
PP_0566 -0.9 -1.0 translation-related factor compare
PP_0293 -0.9 -1.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2898 -0.9 -2.3 conserved exported protein of unknown function compare
PP_4131 -0.9 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_1468 -0.9 -1.9 Tyrosine recombinase XerD compare
PP_0440 -0.9 -2.9 Elongation factor Tu-A compare
PP_2718 -0.9 -2.5 arsenic resistance transcriptional regulator compare
PP_5317 -0.9 -2.1 Probable chorismate pyruvate-lyase compare
PP_1187 -0.9 -4.0 sensor protein compare
PP_4699 -0.9 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4004 -0.9 -3.2 DNA translocase FtsK compare
PP_4942 -0.9 -1.4 conserved protein of unknown function compare
PP_1568 -0.9 -1.2 conserved protein of unknown function compare
PP_3821 -0.9 -4.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_5475 -0.9 -1.3 conserved protein of unknown function compare
PP_5598 -0.9 -2.4 conserved protein of unknown function compare
PP_4880 -0.9 -4.5 exoribonuclease R compare
PP_5350 -0.9 -2.6 Transcriptional regulator, RpiR family compare
PP_1097 -0.8 -1.1 Methionine--tRNA ligase compare
PP_2302 -0.8 -2.5 DNA-binding, ATP-dependent protease compare
PP_5393 -0.8 -1.3 putative metal-binding chaperone compare
PP_2720 -0.8 -1.2 conserved protein of unknown function compare
PP_1076 -0.8 -3.5 aquaglyceroporin compare
PP_4471 -0.8 -2.4 Magnesium transporter compare
PP_2903 -0.8 -1.9 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2328 -0.8 -1.9 Phosphoadenosine phosphosulfate reductase compare
PP_3332 -0.8 -2.3 putative cytochrome c-type protein compare
PP_4098 -0.8 -1.0 UvrABC system protein C compare
PP_2379 -0.8 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_0831 -0.8 -3.2 hypothetical protein compare
PP_2899 -0.8 -1.4 conserved exported protein of unknown function compare
PP_1268 -0.8 -1.4 putative HtrA suppressor protein sohA compare
PP_4660 -0.8 -2.3 Transcriptional regulator, LysR family compare
PP_0888 -0.8 -0.9 Photosynthetic apparatus regulatory protein RegA compare
PP_1217 -0.8 -3.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0401 -0.8 -2.1 Ribosomal RNA small subunit methyltransferase A compare
PP_2299 -0.8 -3.0 Trigger factor compare
PP_t11 -0.8 -1.5 tRNA-Lys compare
PP_1198 -0.8 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4917 -0.8 -2.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1131 -0.8 -3.1 outer membrane lipoprotein compare
PP_1310 -0.8 -1.4 conserved hypothetical protein compare
PP_3243 -0.8 -1.8 Acetyltransferase, GNAT family compare
PP_4571 -0.8 -3.5 cysteine synthase A compare
PP_3738 -0.8 -2.5 putative Transcriptional regulator VanR compare
PP_5198 -0.8 -2.2 conserved protein of unknown function compare
PP_2928 -0.8 -3.3 Saccharopine dehydrogenase compare
PP_2929 -0.8 -3.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4988 -0.8 -3.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4504 -0.7 -1.0 conserved exported protein of unknown function compare
PP_0827 -0.7 -2.8 putative phosphonate transport system permease protein PtxC compare
PP_1218 -0.7 -2.0 putative acyl-CoA thioesterase compare
PP_4937 -0.7 -2.1 toluene tolerance protein compare
PP_5093 -0.7 -1.0 twitching motility protein compare
PP_2672 -0.7 -2.8 Transcriptional activator protein ExaE compare
PP_4964 -0.7 -1.5 D-erythrose 4-phosphate dehydrogenase compare
PP_2000 -0.7 -1.4 amidophosphoribosyl transferase compare
PP_4622 -0.7 -3.0 Hmg transcriptional repressor compare
PP_4861 -0.7 -2.9 conserved protein of unknown function compare
PP_0850 -0.7 -3.1 Dual-specificity RNA methyltransferase RlmN compare
PP_4879 -0.7 -3.1 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_2970 -0.7 -2.2 conserved exported protein of unknown function compare
PP_1185 -0.7 -3.0 Outer membrane protein H1 compare
PP_2087 -0.7 -2.0 CmpX protein compare
PP_5140 -0.7 -1.4 Transcriptional regulator, MerR family compare
PP_3662 -0.7 -3.3 conserved protein of unknown function compare
PP_1733 -0.7 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_1210 -0.7 -3.0 DNA-binding stress protein compare
PP_5706 -0.7 -1.5 Sec translocation complex - SecG subunit compare
PP_4124 -0.7 -1.9 NADH-quinone oxidoreductase subunit G compare
PP_3999 -0.7 -2.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2378 -0.7 -1.2 Fe/S biogenesis protein NfuA compare
PP_2320 -0.7 -4.7 conserved exported protein of unknown function compare
PP_5617 -0.7 -2.2 conserved protein of unknown function compare
PP_1999 -0.6 -1.2 membrane protein required for colicin V production compare
PP_5310 -0.6 -3.3 junction-specific ATP-dependent DNA helicase compare
PP_0240 -0.6 -2.1 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_4835 -0.6 -1.6 conserved exported protein of unknown function compare
PP_3766 -0.6 -1.8 Lactoylglutathione lyase compare
PP_0119 -0.6 -1.9 putative zinc uptake regulation protein ZUR compare
PP_5670 -0.6 -2.5 conserved protein of unknown function compare
PP_2683 -0.6 -3.1 putative sensory box histidine kinase/response regulator compare
PP_5139 -0.6 -1.9 cadmium translocating P-type ATPase compare
PP_3451 -0.6 -1.9 conserved exported protein of unknown function compare
PP_0254 -0.6 -1.2 conserved protein of unknown function compare
PP_0958 -0.6 -2.4 phospholipid ABC transporter ATP-binding subunit compare
PP_5748 -0.6 -0.7 cytochrome c heme lyase subunit compare
PP_2729 -0.6 -2.0 conserved protein of unknown function compare
PP_0048 -0.6 -0.9 conserved protein of unknown function compare
PP_1508 -0.6 -1.8 conserved protein of unknown function compare
PP_2217 -0.6 -1.4 enoyl-CoA hydratase compare
PP_2950 -0.6 -2.3 conserved protein of unknown function compare
PP_0069 -0.6 -2.2 putative Rossmann fold nucleotide-binding protein compare
PP_1294 -0.6 -2.7 molybdopterin synthase large subunit compare
PP_5628 -0.6 -1.6 conserved protein of unknown function compare
PP_3284 -0.6 -2.1 enoyl-CoA hydratase-isomerase compare
PP_3840 -0.6 -1.0 conserved protein of unknown function compare
PP_3903 -0.6 -1.4 conserved protein of unknown function compare
PP_2132 -0.6 -1.7 Universal stress protein compare
PP_4541 -0.6 -2.0 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_0938 -0.6 -3.7 conserved protein of unknown function compare
PP_5701 -0.6 -1.0 conserved protein of unknown function compare
PP_3541 -0.6 -1.1 Transporter, MgtC family compare
PP_1466 -0.6 -2.2 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_0235 -0.6 -1.7 Peroxidase compare
PP_2214 -0.6 -2.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0738 -0.6 -1.8 conserved protein of unknown function compare
PP_0380 -0.6 -2.2 Coenzyme PQQ synthesis protein A compare
PP_0234 -0.6 -3.8 outer-membrane porin E compare
PP_1326 -0.6 -1.6 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2858 -0.6 -1.5 conserved exported protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For r2a control with 0.2% methanol Methanol in Pseudomonas putida KT2440

For r2a control with 0.2% methanol Methanol across organisms