Experiment set38IT057 for Pseudomonas putida KT2440

Compare to:

R2A control with 0.2% methanol

200 most important genes:

  gene name fitness t score description  
PP_4943 -5.6 -3.8 putative Glycosyl transferase compare
PP_4799 -5.1 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -4.8 -8.6 conserved lipoprotein of unknown function compare
PP_4693 -4.6 -10.5 RNA polymerase-binding transcription factor DksA compare
PP_4700 -4.2 -4.1 pantothenate synthetase compare
PP_4724 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_4126 -4.1 -2.8 NADH-quinone oxidoreductase subunit I compare
PP_1654 -4.0 -2.8 cysteine synthase B compare
PP_5095 -3.9 -3.4 pyrroline-5-carboxylate reductase compare
PP_4999 -3.7 -2.6 dihydroorotase-like protein compare
PP_0691 -3.7 -4.3 Glutamate 5-kinase compare
PP_4265 -3.6 -5.2 DNA-binding transcriptional dual regulator compare
PP_4902 -3.5 -3.8 Oligoribonuclease compare
PP_0393 -3.4 -5.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2328 -3.4 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_4723 -3.1 -4.3 Carbamoyl-phosphate synthase large chain compare
PP_2337 -3.0 -3.3 aconitate isomerase compare
PP_1764 -2.4 -3.4 Phosphoglycolate phosphatase 2 compare
PP_3821 -2.3 -6.9 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4936 -2.2 -8.0 O-antigen polymerase compare
PP_0719 -2.2 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1734 -2.2 -6.1 Probable septum site-determining protein MinC compare
PP_3999 -2.2 -6.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4124 -2.2 -4.8 NADH-quinone oxidoreductase subunit G compare
PP_4560 -2.1 -4.7 putative Ribonuclease BN compare
PP_1898 -2.1 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4122 -2.1 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4204 -2.0 -5.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4895 -1.9 -3.5 tRNA dimethylallyltransferase compare
PP_1237 -1.9 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4938 -1.7 -7.5 putative Glycosyl transferase compare
PP_0566 -1.7 -1.4 translation-related factor compare
PP_3365 -1.7 -1.5 Acetolactate synthase compare
PP_4131 -1.7 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_1664 -1.6 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_4874 -1.6 -1.3 50S ribosomal protein L9 compare
PP_4942 -1.6 -1.9 conserved protein of unknown function compare
PP_4940 -1.5 -6.2 Putative glycosyltransferase compare
PP_1232 -1.5 -6.6 conserved exported protein of unknown function compare
PP_1002 -1.5 -5.1 arginine/ornithine antiporter compare
PP_4342 -1.5 -3.7 flagellar synthesis regulator, putative ATPase compare
PP_0339 -1.5 -3.3 Pyruvate dehydrogenase E1 component compare
PP_2088 -1.5 -2.7 RNA polymerase sigma factor SigX compare
PP_0949 -1.5 -4.5 putative ATP-binding protein UPF0042 compare
PP_4804 -1.5 -2.5 RlpA-like lipoprotein compare
PP_2322 -1.5 -4.9 Major outer membrane lipoprotein compare
PP_4273 -1.4 -1.8 Transcriptional regulator, MerR family compare
PP_5327 -1.4 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_1783 -1.4 -2.1 dTDP-glucose pyrophosphorylase compare
PP_0593 -1.4 -1.1 putative ribosome-binding factor compare
PP_1428 -1.4 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_1733 -1.3 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_4785 -1.3 -3.9 conserved exported protein of unknown function compare
PP_1778 -1.3 -4.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1215 -1.3 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
PP_3102 -1.3 -2.8 conserved protein of unknown function compare
PP_1224 -1.3 -5.2 periplasmic subunit of the TolQRA transport system compare
PP_2000 -1.3 -2.1 amidophosphoribosyl transferase compare
PP_4997 -1.3 -1.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4937 -1.3 -2.6 toluene tolerance protein compare
PP_0855 -1.2 -1.9 conserved protein of unknown function compare
PP_1353 -1.2 -2.5 conserved membrane protein of unknown function compare
PP_4130 -1.2 -2.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5310 -1.2 -5.1 junction-specific ATP-dependent DNA helicase compare
PP_0957 -1.2 -2.1 D-arabinose 5-phosphate isomerase compare
PP_1187 -1.2 -6.2 sensor protein compare
PP_0164 -1.2 -3.4 conserved protein of unknown function compare
PP_2379 -1.1 -3.1 putative cytochrome oxidase biogenesis protein compare
PP_4699 -1.1 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5202 -1.1 -1.4 putative cell division protein compare
PP_2336 -1.1 -2.9 aconitate hydratase 1 compare
PP_2847 -1.1 -1.6 Urease accessory protein UreJ compare
PP_1217 -1.1 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_t12 -1.1 -1.2 tRNA-Thr compare
PP_2932 -1.1 -3.4 Amidase family protein compare
PP_4004 -1.1 -3.1 DNA translocase FtsK compare
PP_2765 -1.1 -1.8 putative Sulfonate monooxygenase MsuD compare
PP_1096 -1.1 -2.6 putative electron transport complex protein compare
PP_5253 -1.0 -1.8 Arylesterase compare
PP_3034 -1.0 -1.7 putative Regulator protein compare
PP_4793 -1.0 -2.0 conserved protein of unknown function compare
PP_2299 -1.0 -3.5 Trigger factor compare
PP_3239 -1.0 -1.7 putative cointegrate resolution protein T Tn4652 compare
PP_2737 -1.0 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_3563 -1.0 -2.6 conserved exported protein of unknown function compare
PP_1999 -1.0 -1.0 membrane protein required for colicin V production compare
PP_4964 -1.0 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5110 -1.0 -1.5 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5706 -1.0 -1.1 Sec translocation complex - SecG subunit compare
PP_0184 -0.9 -3.4 Argininosuccinate lyase compare
PP_2370 -0.9 -1.6 conserved protein of unknown function compare
PP_0003 -0.9 -3.0 16S RNA methyltransferase compare
PP_1912 -0.9 -2.6 Phosphate acyltransferase compare
PP_2087 -0.9 -1.6 CmpX protein compare
PP_4738 -0.9 -2.1 conserved exported protein of unknown function compare
PP_4008 -0.9 -3.2 ATP-dependent serine protease compare
PP_4058 -0.9 -4.4 1,4-alpha-glucan branching enzyme compare
PP_2857 -0.9 -1.6 conserved exported protein of unknown function compare
PP_1528 -0.9 -1.2 conserved protein of unknown function compare
PP_2509 -0.9 -1.3 conserved protein of unknown function compare
PP_2899 -0.9 -0.7 conserved exported protein of unknown function compare
PP_2414 -0.9 -0.8 conserved exported protein of unknown function compare
PP_5230 -0.9 -2.2 Tyrosine recombinase XerC compare
PP_0276 -0.9 -1.0 Transcriptional regulator, Cro/CI family compare
PP_4917 -0.9 -2.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1055 -0.9 -1.5 Type II secretion pathway protein GspN compare
PP_4129 -0.9 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1076 -0.8 -2.9 aquaglyceroporin compare
PP_1208 -0.8 -2.1 conserved protein of unknown function, SlyX family compare
PP_0833 -0.8 -1.1 queuine tRNA-ribosyltransferase compare
PP_4329 -0.8 -2.1 FlhB domain protein compare
PP_4301 -0.8 -1.9 Pyruvate kinase compare
PP_4227 -0.8 -1.5 conserved protein of unknown function compare
PP_0306 -0.8 -2.5 conserved protein of unknown function compare
PP_1198 -0.8 -1.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0972 -0.8 -2.0 UPF0213 protein PP_0972 compare
PP_1124 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_0063 -0.8 -2.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3265 -0.8 -2.2 putative phosphohydrolase of unknown function compare
PP_1468 -0.8 -1.4 Tyrosine recombinase XerD compare
PP_4121 -0.8 -2.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5216 -0.8 -1.5 exopolyphosphatase compare
PP_3407 -0.8 -1.8 conserved protein of unknown function compare
PP_0999 -0.8 -1.7 carbamate kinase compare
PP_2555 -0.8 -2.1 conserved protein of unknown function compare
PP_3002 -0.8 -2.2 shikimate dehydrogenase-related enzyme compare
PP_0666 -0.8 -2.5 conserved protein of unknown function compare
PP_1994 -0.8 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_0998 -0.8 -3.2 conserved protein of unknown function compare
PP_1801 -0.8 -4.2 Glycosyl transferase WbpY compare
PP_1493 -0.8 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3065 -0.8 -3.0 Pyocin R2_PP, tail formation compare
PP_1804 -0.8 -4.6 Glycosyl transferase WbpL compare
PP_0760 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_5569 -0.8 -1.7 protein of unknown function of phage origin compare
PP_1366 -0.7 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_1211 -0.7 -3.0 conserved protein of unknown function compare
PP_2764 -0.7 -2.4 FMN reductase (NADPH) compare
PP_1906 -0.7 -2.3 ribosomal large subunit pseudouridine synthase C compare
PP_4451 -0.7 -2.3 conserved protein of unknown function compare
PP_0959 -0.7 -1.2 phospholipid ABC transporter compare
PP_1319 -0.7 -2.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0832 -0.7 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0938 -0.7 -4.0 conserved protein of unknown function compare
PP_5717 -0.7 -1.0 conserved protein of unknown function compare
PP_2720 -0.7 -1.0 conserved protein of unknown function compare
PP_4546 -0.7 -2.1 ATP-dependent helicase HrpA compare
PP_1926 -0.7 -1.5 putative phosphotyrosine-protein phosphatase compare
PP_0065 -0.7 -2.1 NAD-binding component of TrK potassium transporter compare
PP_1562 -0.7 -1.6 putative Phage terminase, small subunit compare
PP_1987 -0.7 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_4482 -0.7 -1.5 Transcriptional regulator, AraC family compare
PP_3192 -0.7 -2.4 conserved protein of unknown function compare
PP_4571 -0.7 -3.2 cysteine synthase A compare
PP_5198 -0.7 -2.0 conserved protein of unknown function compare
PP_1826 -0.7 -1.3 Hydrolase, isochorismatase family compare
PP_1216 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1317 -0.7 -1.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_0673 -0.7 -1.7 conserved protein of unknown function compare
PP_2675 -0.7 -1.3 Cytochrome c-type protein compare
PP_5227 -0.7 -2.6 diaminopimelate decarboxylase compare
PP_2371 -0.7 -1.7 Sulphite reductase hemoprotein, beta subunit compare
PP_2568 -0.7 -0.8 Ring-cleaving dioxygenase compare
PP_5748 -0.7 -0.9 cytochrome c heme lyase subunit compare
PP_4477 -0.7 -2.4 N-succinylarginine dihydrolase compare
PP_2214 -0.7 -1.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_3627 -0.7 -1.7 conserved protein of unknown function compare
PP_1186 -0.7 -1.4 two component system DNA-binding transcriptional dual regulator compare
PP_1779 -0.7 -2.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1068 -0.7 -1.5 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_0850 -0.6 -2.1 Dual-specificity RNA methyltransferase RlmN compare
PP_5612 -0.6 -1.8 protein of unknown function compare
PP_4502 -0.6 -2.0 putative enzyme compare
PP_4109 -0.6 -0.8 conserved protein of unknown function compare
PP_2255 -0.6 -2.3 C4-dicarboxylate transport protein compare
PP_4332 -0.6 -2.0 Chemotaxis protein CheW compare
PP_4696 -0.6 -1.9 Nitrogen regulation protein NR(I) compare
PP_4340 -0.6 -1.4 response regulator for chemotactic signal transduction compare
PP_1871 -0.6 -2.3 Protease HtpX compare
PP_2232 -0.6 -2.4 XRE family transcriptional regulator compare
PP_0852 -0.6 -1.8 Transcriptional regulator, Cro/CI family compare
PP_4941 -0.6 -2.9 conserved exported protein of unknown function compare
PP_5475 -0.6 -0.9 conserved protein of unknown function compare
PP_1568 -0.6 -0.9 conserved protein of unknown function compare
PP_1546 -0.6 -2.4 conserved protein of unknown function compare
PP_5217 -0.6 -4.3 Polyphosphate kinase compare
PP_3384 -0.6 -1.3 gluconate 2-dehydrogenase gamma subunit compare
PP_4988 -0.6 -2.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0123 -0.6 -3.9 DNA polymerase I, 5 compare
PP_4792 -0.6 -1.2 conserved exported protein of unknown function compare
PP_1800 -0.6 -3.7 Oxidoreductase Rmd compare
PP_1001 -0.6 -2.1 arginine deiminase compare
PP_1022 -0.6 -2.5 glucose 6-phosphate-1-dehydrogenase compare
PP_5393 -0.6 -0.8 putative metal-binding chaperone compare
PP_2327 -0.6 -2.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1780 -0.6 -4.8 putative mannosyltransferase compare
PP_0809 -0.6 -2.9 disulfide bond formation protein B compare
PP_3353 -0.6 -1.7 putative sulfatase-modifying factor (C-alpha-formyglycine- generating enzyme) compare
PP_4317 -0.6 -1.3 conserved protein of unknown function compare
PP_5155 -0.6 -2.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control with 0.2% methanol experiments

For r2a control with 0.2% methanol Methanol across organisms