Experiment set38IT054 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 480 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_4902 -7.6 -5.3 Oligoribonuclease compare
PP_0346 -7.2 -9.9 putative Heptose kinase WapQ compare
PP_1186 -7.2 -5.0 two component system DNA-binding transcriptional dual regulator compare
PP_1150 -6.9 -10.6 putative Membrane protein compare
PP_0691 -5.9 -4.1 Glutamate 5-kinase compare
PP_1152 -5.7 -10.0 putative membrane fusion efflux protein compare
PP_0345 -5.7 -5.5 putative Heptose kinase WapP compare
PP_0856 -5.6 -6.6 conserved lipoprotein of unknown function compare
PP_0809 -5.5 -13.7 disulfide bond formation protein B compare
PP_4799 -5.1 -3.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4213 -5.0 -5.4 putative dipeptidase compare
PP_4214 -5.0 -5.9 pyoverdine biosynthesis related protein compare
PP_5084 -5.0 -15.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0127 -4.9 -6.5 Thiol:disulfide interchange protein compare
PP_0958 -4.9 -8.2 phospholipid ABC transporter ATP-binding subunit compare
PP_1898 -4.7 -4.6 MotA/TolQ/ExbB proton channel family protein compare
PP_0961 -4.7 -8.8 toluene tolerance protein compare
PP_1428 -4.7 -4.5 Sigma factor AlgU negative regulatory protein compare
PP_1151 -4.5 -6.7 conserved protein of unknown function compare
PP_4994 -4.5 -4.9 conserved protein of unknown function compare
PP_1325 -4.4 -9.6 putative lipoprotein compare
PP_0962 -4.3 -5.5 toluene-tolerance protein compare
PP_0960 -4.1 -7.3 phospholipid ABC transporter binding protein compare
PP_4724 -4.1 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_5095 -3.9 -3.4 pyrroline-5-carboxylate reductase compare
PP_4700 -3.9 -4.6 pantothenate synthetase compare
PP_2163 -3.8 -7.5 VacJ lipoprotein compare
PP_4860 -3.8 -12.0 putative Mannose-6-phosphate isomerase conserved
PP_1994 -3.8 -4.5 tRNA pseudouridine (38-40)synthase compare
PP_5706 -3.8 -5.3 Sec translocation complex - SecG subunit compare
PP_4342 -3.8 -5.7 flagellar synthesis regulator, putative ATPase compare
PP_1384 -3.8 -7.4 Probable efflux pump outer membrane protein TtgC compare
PP_4937 -3.8 -6.3 toluene tolerance protein compare
PP_4265 -3.7 -5.3 DNA-binding transcriptional dual regulator compare
PP_4693 -3.7 -7.2 RNA polymerase-binding transcription factor DksA compare
PP_4999 -3.6 -2.5 dihydroorotase-like protein compare
PP_4804 -3.6 -5.7 RlpA-like lipoprotein compare
PP_4785 -3.5 -4.8 conserved exported protein of unknown function compare
PP_2322 -3.5 -5.1 Major outer membrane lipoprotein compare
PP_0909 -3.5 -8.0 conserved exported protein of unknown function compare
PP_2903 -3.4 -3.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1654 -3.4 -4.0 cysteine synthase B compare
PP_4895 -3.3 -6.3 tRNA dimethylallyltransferase compare
PP_4944 -3.1 -5.4 Carbamoyltransferase compare
PP_4723 -3.1 -4.2 Carbamoyl-phosphate synthase large chain compare
PP_1385 -2.9 -13.4 Probable efflux pump membrane transporter TtgB compare
PP_1386 -2.9 -8.5 Probable efflux pump periplasmic linker TtgA compare
PP_0719 -2.8 -3.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2302 -2.8 -5.9 DNA-binding, ATP-dependent protease compare
PP_0833 -2.8 -2.8 queuine tRNA-ribosyltransferase compare
PP_0908 -2.7 -7.2 conserved exported protein of unknown function compare
PP_1381 -2.7 -1.8 4-carboxymuconolactone decarboxylase compare
PP_4129 -2.7 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1217 -2.6 -5.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1778 -2.6 -5.6 Lipopolysaccharide ABC export system, permease protein compare
PP_0855 -2.6 -2.2 conserved protein of unknown function compare
PP_0180 -2.5 -10.6 putative cytochrome c family protein compare
PP_4217 -2.5 -16.8 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1034 -2.5 -12.3 multicopper oxidase compare
PP_2320 -2.5 -10.8 conserved exported protein of unknown function compare
PP_0111 -2.5 -5.9 Electron transport protein SCO1/SenC compare
PP_4941 -2.4 -6.4 conserved exported protein of unknown function compare
PP_1232 -2.4 -8.9 conserved exported protein of unknown function compare
PP_0775 -2.4 -3.3 conserved protein of unknown function compare
PP_4121 -2.4 -5.9 NADH-quinone oxidoreductase subunit C/D compare
PP_4122 -2.3 -2.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2433 -2.3 -2.7 conserved protein of unknown function compare
PP_1198 -2.3 -4.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4836 -2.3 -3.4 conserved exported protein of unknown function compare
PP_5350 -2.3 -4.3 Transcriptional regulator, RpiR family compare
PP_2331 -2.2 -5.4 conserved membrane protein of unknown function compare
PP_1779 -2.2 -6.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2402 -2.2 -2.5 putative Sensor histidine kinase compare
PP_4120 -2.2 -4.9 NADH-quinone oxidoreductase subunit B compare
PP_1362 -2.2 -5.0 pyruvate kinase II compare
PP_0846 -2.2 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_2299 -2.2 -4.9 Trigger factor compare
PP_1187 -2.2 -8.1 sensor protein compare
PP_1623 -2.2 -11.1 RNA polymerase, sigma S (sigma 38) factor compare
PP_1237 -2.2 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0910 -2.1 -5.0 conserved exported protein of unknown function compare
PP_1224 -2.1 -4.9 periplasmic subunit of the TolQRA transport system compare
PP_1738 -2.1 -7.9 conserved exported protein of unknown function conserved
PP_4008 -2.1 -5.9 ATP-dependent serine protease compare
PP_1058 -2.1 -12.6 conserved protein of unknown function compare
PP_1734 -2.1 -4.4 Probable septum site-determining protein MinC compare
PP_2000 -2.0 -2.4 amidophosphoribosyl transferase compare
PP_1663 -2.0 -6.6 conserved exported protein of unknown function compare
PP_0913 -2.0 -4.8 conserved exported protein of unknown function compare
PP_0164 -2.0 -5.4 conserved protein of unknown function compare
PP_1737 -1.9 -7.4 conserved protein of unknown function conserved
PP_4131 -1.9 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_4880 -1.9 -9.0 exoribonuclease R compare
PP_2088 -1.9 -3.1 RNA polymerase sigma factor SigX compare
PP_0339 -1.8 -2.5 Pyruvate dehydrogenase E1 component compare
PP_1733 -1.8 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4514 -1.8 -9.3 putative esterase of the alpha-beta hydrolase superfamily conserved
PP_0959 -1.8 -1.6 phospholipid ABC transporter compare
PP_5309 -1.8 -6.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0872 -1.8 -5.0 Peptide chain release factor 3 compare
PP_5329 -1.8 -4.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3300 -1.8 -6.2 Transcriptional regulator, tetR family compare
PP_4701 -1.8 -1.3 glucose-6-phosphate isomerase compare
PP_5145 -1.7 -11.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4204 -1.7 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4215 -1.7 -3.4 pyoverdine biosynthesis related protein compare
PP_4124 -1.7 -4.2 NADH-quinone oxidoreductase subunit G compare
PP_0184 -1.7 -5.9 Argininosuccinate lyase compare
PP_4264 -1.7 -5.5 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1656 -1.7 -6.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_4126 -1.6 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_1268 -1.6 -3.3 putative HtrA suppressor protein sohA compare
PP_1076 -1.6 -4.7 aquaglyceroporin compare
PP_1128 -1.6 -2.6 OmpA family protein compare
PP_2929 -1.6 -5.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2328 -1.6 -3.9 Phosphoadenosine phosphosulfate reductase compare
PP_4570 -1.6 -8.0 conserved protein of unknown function conserved
PP_3330 -1.6 -8.4 putative Outer membrane ferric siderophore receptor compare
PP_4923 -1.6 -7.1 Outer membrane efflux protein compare
PP_2130 -1.6 -7.0 putative Soluble lytic transglycosylase compare
PP_3903 -1.5 -1.6 conserved protein of unknown function compare
PP_0725 -1.5 -3.8 conserved hypothetical TPR repeat protein compare
PP_4943 -1.5 -1.9 putative Glycosyl transferase compare
PP_0022 -1.5 -1.3 hypothetical protein compare
PP_0888 -1.5 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_2304 -1.5 -6.0 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_4699 -1.5 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4803 -1.5 -5.1 D-alanyl-D-alanine carboxypeptidase compare
PP_5058 -1.5 -5.0 Carboxy-terminal-processing protease compare
PP_3428 -1.5 -5.9 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_0393 -1.5 -2.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1078 -1.5 -5.0 putative ABC transporter, ATP-binding protein compare
PP_2378 -1.4 -2.1 Fe/S biogenesis protein NfuA compare
PP_1829 -1.4 -3.1 Hydrolase, alpha/beta fold family compare
PP_5185 -1.4 -4.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5216 -1.4 -2.6 exopolyphosphatase compare
PP_4942 -1.4 -1.8 conserved protein of unknown function compare
PP_1326 -1.4 -5.2 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_4130 -1.4 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5331 -1.4 -3.0 Long-chain acyl-CoA thioester hydrolase compare
PP_4004 -1.4 -3.8 DNA translocase FtsK compare
PP_0130 -1.4 -6.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase compare
PP_1444 -1.4 -8.0 quinoprotein glucose dehydrogenase compare
PP_0282 -1.4 -4.6 L-arginine ABC transporter - periplasmic binding subunit conserved
PP_0685 -1.4 -2.5 conserved protein of unknown function compare
PP_0547 -1.4 -3.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2379 -1.4 -3.8 putative cytochrome oxidase biogenesis protein compare
PP_1328 -1.3 -2.1 Protein MraZ compare
PP_2330 -1.3 -2.0 conserved protein of unknown function compare
PP_1001 -1.3 -2.8 arginine deiminase compare
PP_4891 -1.3 -3.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3474 -1.3 -2.6 putative Curli fiber protein CsgE compare
PP_0832 -1.3 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2147 -1.3 -2.9 conserved exported protein of unknown function compare
PP_4892 -1.3 -4.2 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1185 -1.3 -4.4 Outer membrane protein H1 compare
PP_3473 -1.3 -2.0 curli secretion and assembly outer membrane associated component compare
PP_0735 -1.2 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5699 -1.2 -4.0 putative iron uptake protein compare
PP_5310 -1.2 -5.3 junction-specific ATP-dependent DNA helicase compare
PP_5445 -1.2 -2.4 conserved protein of unknown function compare
PP_1366 -1.2 -1.5 Transcriptional regulator MvaT, P16 subunit compare
PP_0401 -1.2 -2.2 Ribosomal RNA small subunit methyltransferase A compare
PP_4098 -1.2 -1.8 UvrABC system protein C compare
PP_1002 -1.2 -4.0 arginine/ornithine antiporter compare
PP_1664 -1.1 -2.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_2323 -1.1 -3.5 conserved protein of unknown function compare
PP_4480 -1.1 -5.6 arginine N-succinyltransferase, subunit alpha compare
PP_5717 -1.1 -2.0 conserved protein of unknown function compare
PP_4779 -1.1 -8.3 AMP nucleosidase compare
PP_1635 -1.1 -3.6 DNA-binding response regulator compare
PP_4642 -1.1 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_5230 -1.1 -2.4 Tyrosine recombinase XerC compare
PP_4479 -1.1 -3.8 arginine N-succinyltransferase, subunit beta compare
PP_3563 -1.1 -3.6 conserved exported protein of unknown function compare
PP_4722 -1.1 -3.0 Transcription elongation factor GreA compare
PP_4881 -1.1 -6.0 putative Iron ABC transporter, periplasmic iron-binding protein compare
PP_4471 -1.1 -3.9 Magnesium transporter compare
PP_1729 -1.1 -2.1 conserved protein of unknown function compare
PP_4560 -1.1 -2.9 putative Ribonuclease BN compare
PP_5328 -1.1 -1.9 putative phosphate transport system permease protein compare
PP_2907 -1.1 -3.5 DNA-binding response regulator compare
PP_0938 -1.0 -5.8 conserved protein of unknown function compare
PP_0760 -1.0 -2.6 conserved membrane protein of unknown function compare
PP_1216 -1.0 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4835 -1.0 -1.1 conserved exported protein of unknown function compare
PP_2090 -1.0 -3.7 Uroporphyrinogen-III C-methyltransferase compare
PP_1088 -1.0 -5.5 Argininosuccinate synthase compare
PP_t11 -1.0 -2.9 tRNA-Lys compare
PP_1513 -1.0 -3.1 Ribosomal RNA small subunit methyltransferase J compare
PP_2928 -1.0 -3.9 Saccharopine dehydrogenase compare
PP_t10 -1.0 -1.3 tRNA-Pro compare
PP_2290 -1.0 -2.4 conserved protein of unknown function compare
PP_1646 -1.0 -2.1 putative Thioredoxin compare
PP_0917 -1.0 -3.3 Chromosome initiation inhibitor compare
PP_2371 -1.0 -2.6 Sulphite reductase hemoprotein, beta subunit compare
PP_2624 -1.0 -2.1 conserved protein of unknown function compare
PP_5600 -1.0 -2.0 conserved protein of unknown function compare
PP_0916 -1.0 -1.5 Amino acid transporter LysE compare
PP_1271 -1.0 -2.1 putative Multidrug efflux MFS transporter compare


Specific Phenotypes

For 24 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms