Experiment set38IT054 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 480 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_4515 +2.3 17.9 Transcriptional regulator, MarR family compare
PP_1650 +2.1 20.6 Sensor protein GacS compare
PP_4099 +2.0 16.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4373 +1.6 13.8 Transcriptional regulator FleQ compare
PP_4353 +1.6 8.2 Flagellar biosynthetic protein fliR compare
PP_2889 +1.6 4.1 putative Transmembrane regulator PrtR compare
PP_0434 +1.5 7.9 Anhydro-N-acetylmuramic acid kinase compare
PP_3971 +1.5 3.7 conserved protein of unknown function compare
PP_3052 +1.4 2.5 conserved protein of unknown function compare
PP_5502 +1.4 6.2 ribosome modulation factor compare
PP_4355 +1.4 2.7 flagellar export apparatus subunit compare
PP_0951 +1.3 8.5 Ribosome hibernation promoting factor compare
PP_4389 +1.3 9.0 Flagellar basal-body rod modification protein FlgD compare
PP_1355 +1.3 9.4 Muropeptide permease AmpG compare
PP_4354 +1.3 2.5 flagellar export apparatus subunit compare
PP_4388 +1.3 10.5 Flagellar hook protein FlgE compare
PP_0405 +1.3 9.1 conserved protein of unknown function compare
PP_4367 +1.2 5.0 Flagellar assembly protein FliH compare
PP_4171 +1.2 10.5 conserved exported protein of unknown function compare
PP_3551 +1.2 3.5 DNA-binding response regulator, LuxR family compare
PP_4365 +1.2 8.3 Flagellar protein FliJ compare
PP_5582 +1.2 2.4 conserved protein of unknown function compare
PP_4369 +1.2 7.4 Flagellar M-ring protein compare
PP_4368 +1.2 4.9 flagellar motor switch protein compare
PP_4352 +1.2 9.1 flagellin export apparatus, substrate specificity protein compare
PP_4358 +1.2 6.4 flagellar synthesis, switching and energizing component compare
PP_4366 +1.2 8.7 flagellum-specific ATP synthase compare
PP_4344 +1.2 7.2 flagellar export pore protein compare
PP_4361 +1.1 4.9 Flagellar hook-length control protein FliK compare
PP_4199 +1.1 1.9 putative Lipoprotein compare
PP_4828 +1.1 2.6 Precorrin-8X methylmutase compare
PP_4341 +1.1 6.3 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4396 +1.1 3.6 conserved protein of unknown function compare
PP_4060 +1.1 8.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_3365 +1.1 2.2 Acetolactate synthase compare
PP_4381 +1.0 8.7 Flagellar hook-associated protein FlgK compare
PP_3637 +1.0 2.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_5508 +1.0 1.8 conserved protein of unknown function compare
PP_4370 +1.0 3.7 Flagellar hook-basal body complex protein FliE compare
PP_2145 +1.0 3.7 beta-N-acetylglucosaminidase compare
PP_2280 +1.0 1.5 conserved protein of unknown function compare
PP_4390 +1.0 6.3 flagellar basal-body rod protein FlgC compare
PP_4394 +1.0 5.9 flagella basal body P-ring formation protein compare
PP_1404 +0.9 1.9 conserved protein of unknown function compare
PP_4385 +0.9 4.0 flagellar basal-body rod protein FlgG compare
PP_2327 +0.9 4.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0789 +0.9 4.1 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4382 +0.9 5.9 Peptidoglycan hydrolase FlgJ compare
PP_4337 +0.9 4.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_4391 +0.9 4.9 flagellar basal-body rod protein FlgB compare
PP_4939 +0.9 2.7 conserved protein of unknown function compare
PP_4384 +0.9 6.8 Flagellar L-ring protein compare
PP_2168 +0.9 6.0 Transaldolase compare
PP_5140 +0.9 2.7 Transcriptional regulator, MerR family compare
PP_0574 +0.9 7.4 DNA-binding response regulator, LuxR family compare
PP_1774 +0.9 3.9 conserved exported protein of unknown function compare
PP_1776 +0.9 6.7 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5735 +0.9 2.5 conserved hypothetical protein compare
PP_1805 +0.9 7.5 Polysaccharide biosynthesis protein compare
PP_4386 +0.9 4.0 flagellar basal-body rod protein FlgF compare
PP_1803 +0.9 6.4 UDP-sugar epimerase compare
PP_1787 +0.8 5.2 conserved protein of unknown function compare
PP_4814 +0.8 3.1 ATP-dependent protease La domain protein compare
PP_0957 +0.8 1.3 D-arabinose 5-phosphate isomerase compare
PP_3035 +0.8 2.8 conserved protein of unknown function compare
PP_4904 +0.8 6.8 Flagellar motor rotation protein compare
PP_2892 +0.8 6.3 conserved exported protein of unknown function compare
PP_1528 +0.8 1.8 conserved protein of unknown function compare
PP_1770 +0.8 2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_1918 +0.8 5.9 septation protein compare
PP_4356 +0.8 2.7 Flagellar protein FliO compare
PP_1122 +0.8 2.4 OmpA family protein compare
PP_1554 +0.8 1.5 conserved protein of unknown function compare
PP_1113 +0.8 5.1 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0406 +0.8 2.2 Nucleotidyltransferase family protein compare
PP_0589 +0.8 4.9 Bcr/CflA family multidrug resistance transporter compare
PP_4383 +0.8 2.2 Flagellar P-ring protein compare
PP_5456 +0.7 1.9 conserved protein of unknown function compare
PP_2306 +0.7 2.1 conserved exported protein of unknown function compare
PP_3880 +0.7 1.4 conserved exported protein of unknown function compare
PP_0805 +0.7 5.5 Outer membrane efflux protein compare
PP_3454 +0.7 3.1 putative transcriptional regulatory protein compare
PP_1938 +0.7 2.3 conserved protein of unknown function compare
PP_4359 +0.7 3.5 Flagellar protein FliL compare
PP_3312 +0.7 1.8 putative Heat shock protein compare
PP_1096 +0.7 1.9 putative electron transport complex protein compare
PP_2893 +0.7 4.7 conserved exported protein of unknown function compare
PP_3239 +0.7 2.4 putative cointegrate resolution protein T Tn4652 compare
PP_0630 +0.7 1.1 DNA gyrase inhibitor YacG compare
PP_1546 +0.7 3.1 conserved protein of unknown function compare
PP_0674 +0.7 4.9 ADP/ATP ratio sensor and inhibitor of translation compare
PP_0025 +0.7 1.1 hypothetical protein compare
PP_2340 +0.7 2.5 conserved protein of unknown function compare
PP_1775 +0.7 3.2 Metallo-beta-lactamase family protein compare
PP_1387 +0.7 1.9 Probable HTH-type transcriptional regulator TtgR compare
PP_0355 +0.7 2.3 Response regulator compare
PP_2217 +0.7 2.0 enoyl-CoA hydratase compare
PP_0185 +0.7 4.4 Positive alginate biosynthesis regulatory protein compare
PP_1575 +0.7 1.9 conserved protein of unknown function compare
PP_0550 +0.7 2.6 conserved protein of unknown function compare
PP_0967 +0.7 4.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1028 +0.7 1.6 Transcriptional regulator, LysR family compare
PP_3532 +0.7 1.6 Transcriptional regulator, AsnC family compare
PP_3037 +0.7 2.2 C4-type zinc finger protein, DksA/TraR family compare
PP_1801 +0.7 4.5 Glycosyl transferase WbpY compare
PP_1255 +0.7 2.0 putative cis-4-hydroxy-D-proline oxidase compare
PP_4534 +0.7 3.2 conserved protein of unknown function compare
PP_0607 +0.7 2.1 putative Type IV pili biogenesis protein FimT compare
PP_5055 +0.7 2.5 Sulfurtransferase compare
PP_5712 +0.6 2.3 conserved protein of unknown function compare
PP_1112 +0.6 3.6 conserved membrane protein of unknown function compare
PP_4378 +0.6 5.5 flagellin, filament structural protein compare
PP_2972 +0.6 1.2 conserved protein of unknown function compare
PP_0880 +0.6 2.7 dipeptide ABC transporter - putative membrane subunit compare
PP_0435 +0.6 2.9 Peptidase, M23/M37 family compare
PP_2046 +0.6 2.9 Transcriptional regulator, LysR family compare
PP_4380 +0.6 5.0 Flagellar hook-associated protein FlgL compare
PP_0806 +0.6 5.9 putative Surface adhesion protein compare
PP_2005 +0.6 3.8 conserved exported protein of unknown function compare
PP_4296 +0.6 1.5 conserved exported protein of unknown function compare
PP_4905 +0.6 2.7 Flagellar motor rotation protein compare
PP_5003 +0.6 3.9 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_1979 +0.6 1.4 putative Hydrolase compare
PP_1242 +0.6 2.5 conserved protein of unknown function compare
PP_4054 +0.6 1.7 conserved protein of unknown function compare
PP_4173 +0.6 3.9 Sensor histidine kinase/response regulator compare
PP_5267 +0.6 1.0 putative cytochrome c5 compare
PP_0984 +0.6 2.0 conserved membrane protein of unknown function compare
PP_0261 +0.6 3.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3392 +0.6 1.4 conserved protein of unknown function compare
PP_5005 +0.6 4.2 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_2070 +0.6 1.8 Transcriptional regulator, AraC family compare
PP_1692 +0.6 1.1 conserved protein of unknown function compare
PP_0878 +0.6 2.5 dipeptide ABC transporter, binding subunit compare
PP_5604 +0.6 1.5 putative subtilisin-like serine protease compare
PP_t29 +0.6 1.1 tRNA-Ala compare
PP_0966 +0.6 4.1 Histidinol dehydrogenase compare
PP_3346 +0.6 2.0 Nickel transporter ATP-binding protein compare
PP_1442 +0.6 3.1 conserved protein of unknown function compare
PP_3726 +0.6 0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_2715 +0.6 1.9 ArsH protein compare
PP_4172 +0.6 2.9 conserved exported protein of unknown function compare
PP_3707 +0.6 2.3 conserved protein of unknown function compare
PP_4444 +0.6 1.6 transposase compare
PP_4109 +0.6 1.3 conserved protein of unknown function compare
PP_2390 +0.6 3.9 Transcriptional regulator, LysR family compare
PP_1862 +0.5 1.8 conserved membrane protein of unknown function compare
PP_0881 +0.5 2.4 dipeptide ABC transporter - putative membrane subunit compare
PP_1074 +0.5 2.4 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_2646 +0.5 1.7 conserved protein of unknown function compare
PP_1866 +0.5 2.9 Phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_4593 +0.5 0.6 conserved protein of unknown function compare
PP_1190 +0.5 2.3 conserved protein of unknown function compare
PP_1062 +0.5 1.4 MutT/nudix family protein compare
PP_0040 +0.5 1.5 hypothetical protein compare
PP_0947 +0.5 2.3 conserved membrane protein of unknown function compare
PP_1800 +0.5 3.5 Oxidoreductase Rmd compare
PP_5139 +0.5 2.3 cadmium translocating P-type ATPase compare
PP_5711 +0.5 1.2 protein of unknown function compare
PP_0942 +0.5 3.6 regulatory protease compare
PP_1799 +0.5 4.2 GDP-mannose 4,6-dehydratase compare
PP_4180 +0.5 2.8 conserved protein of unknown function compare
PP_1439 +0.5 1.6 conserved exported protein of unknown function compare
PP_5457 +0.5 2.0 conserved protein of unknown function compare
PP_1087 +0.5 3.3 Outer membrane protein, OmpA family compare
PP_0289 +0.5 2.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5070 +0.5 2.8 ParA family protein compare
PP_5574 +0.5 2.7 conserved protein of unknown function compare
PP_4066 +0.5 1.2 methylglutaconyl-CoA hydratase compare
PP_3766 +0.5 0.9 Lactoylglutathione lyase compare
PP_5238 +0.5 2.3 conserved protein of unknown function compare
PP_1786 +0.5 3.8 putative Glycosyl transferase compare
PP_2231 +0.5 2.0 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1917 +0.5 2.6 4-amino-4-deoxychorismate lyase compare
PP_1265 +0.5 2.1 conserved protein of unknown function compare
PP_3449 +0.5 1.9 conserved exported protein of unknown function compare
PP_1907 +0.5 2.5 Hydrolase, haloacid dehalogenase-like family compare
PP_4051 +0.5 2.5 malto-oligosyltrehalose trehalohydrolase compare
PP_4247 +0.5 0.8 Exonuclease compare
PP_5654 +0.5 1.2 putative phosphotriesterase compare
PP_1802 +0.5 3.8 glycosyl transferase compare
PP_2389 +0.5 2.4 conserved protein of unknown function compare
PP_4335 +0.5 3.5 flagellar motor protein compare
PP_0047 +0.5 3.0 response regulator compare
PP_4244 +0.5 3.3 alternative sigma factor compare
PP_2030 +0.5 2.2 conserved protein of unknown function compare
PP_2078 +0.5 1.6 transcriptional activator protein LysR compare
PP_0188 +0.5 2.4 putative Uroporphyrin-III C-methyltransferase compare
PP_5483 +0.5 1.0 conserved protein of unknown function compare
PP_2996 +0.5 2.4 conserved protein of unknown function compare
PP_1429 +0.5 2.0 Sigma factor AlgU regulatory protein MucB compare
PP_0152 +0.5 0.8 conserved exported protein of unknown function compare
PP_3866 +0.5 1.4 conserved protein of unknown function compare
PP_4056 +0.5 2.3 putative phosphohydrolase of unknown function compare
PP_5528 +0.5 1.0 conserved protein of unknown function compare
PP_4645 +0.5 1.4 Large-conductance mechanosensitive channel compare
PP_4910 +0.5 1.5 conserved protein of unknown function compare
PP_3619 +0.5 2.0 conserved protein of unknown function compare
PP_2409 +0.5 1.7 cobalt-zinc-cadmium resistance protein compare
PP_0804 +0.5 3.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare


Specific Phenotypes

For 24 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms