Experiment set38IT052 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 480 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_1152 -6.2 -13.3 putative membrane fusion efflux protein compare
PP_4804 -5.5 -3.8 RlpA-like lipoprotein compare
PP_4902 -5.4 -5.6 Oligoribonuclease compare
PP_1150 -5.3 -10.2 putative Membrane protein compare
PP_5095 -5.3 -3.6 pyrroline-5-carboxylate reductase compare
PP_5084 -5.3 -18.0 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0127 -5.1 -6.3 Thiol:disulfide interchange protein compare
PP_0856 -5.1 -7.8 conserved lipoprotein of unknown function compare
PP_4799 -5.1 -3.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0346 -5.1 -9.6 putative Heptose kinase WapQ compare
PP_3946 -4.7 -2.3 HTH-type transcriptional repressor NicR compare
PP_1428 -4.7 -4.5 Sigma factor AlgU negative regulatory protein compare
PP_0809 -4.5 -10.0 disulfide bond formation protein B compare
PP_0691 -4.4 -5.1 Glutamate 5-kinase compare
PP_2402 -4.2 -4.1 putative Sensor histidine kinase compare
PP_4860 -4.2 -11.6 putative Mannose-6-phosphate isomerase conserved
PP_2903 -4.1 -3.3 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2163 -4.0 -7.5 VacJ lipoprotein compare
PP_4700 -3.9 -4.7 pantothenate synthetase compare
PP_0345 -3.9 -4.3 putative Heptose kinase WapP compare
PP_1151 -3.8 -4.3 conserved protein of unknown function compare
PP_4693 -3.7 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_1237 -3.7 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_1384 -3.7 -6.9 Probable efflux pump outer membrane protein TtgC compare
PP_4785 -3.6 -5.5 conserved exported protein of unknown function compare
PP_4214 -3.5 -4.8 pyoverdine biosynthesis related protein compare
PP_4265 -3.4 -5.6 DNA-binding transcriptional dual regulator compare
PP_1994 -3.4 -4.6 tRNA pseudouridine (38-40)synthase compare
PP_1898 -3.4 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0962 -3.2 -3.8 toluene-tolerance protein compare
PP_4937 -3.2 -4.8 toluene tolerance protein compare
PP_1186 -3.2 -2.8 two component system DNA-binding transcriptional dual regulator compare
PP_4723 -3.1 -4.7 Carbamoyl-phosphate synthase large chain compare
PP_1325 -3.0 -6.3 putative lipoprotein compare
PP_4342 -2.9 -5.1 flagellar synthesis regulator, putative ATPase compare
PP_0958 -2.9 -7.0 phospholipid ABC transporter ATP-binding subunit compare
PP_0961 -2.9 -5.6 toluene tolerance protein compare
PP_4008 -2.8 -8.6 ATP-dependent serine protease compare
PP_0960 -2.8 -5.9 phospholipid ABC transporter binding protein compare
PP_4994 -2.8 -5.2 conserved protein of unknown function compare
PP_1034 -2.8 -10.0 multicopper oxidase compare
PP_0909 -2.8 -8.3 conserved exported protein of unknown function compare
PP_5706 -2.8 -2.4 Sec translocation complex - SecG subunit compare
PP_0855 -2.7 -2.4 conserved protein of unknown function compare
PP_0908 -2.7 -6.4 conserved exported protein of unknown function compare
PP_2299 -2.7 -4.9 Trigger factor compare
PP_4724 -2.7 -4.2 Carbamoyl-phosphate synthase small chain compare
PP_0719 -2.7 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1224 -2.6 -7.7 periplasmic subunit of the TolQRA transport system compare
PP_4895 -2.6 -4.4 tRNA dimethylallyltransferase compare
PP_0910 -2.6 -6.3 conserved exported protein of unknown function compare
PP_1187 -2.6 -7.1 sensor protein compare
PP_2320 -2.6 -9.6 conserved exported protein of unknown function compare
PP_5328 -2.5 -3.9 putative phosphate transport system permease protein compare
PP_1663 -2.5 -7.3 conserved exported protein of unknown function compare
PP_2000 -2.5 -2.4 amidophosphoribosyl transferase compare
PP_1362 -2.4 -5.0 pyruvate kinase II compare
PP_1216 -2.4 -3.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0111 -2.4 -6.3 Electron transport protein SCO1/SenC compare
PP_1385 -2.4 -12.4 Probable efflux pump membrane transporter TtgB compare
PP_2322 -2.4 -5.3 Major outer membrane lipoprotein compare
PP_1778 -2.4 -8.2 Lipopolysaccharide ABC export system, permease protein compare
PP_4213 -2.3 -3.0 putative dipeptidase compare
PP_2379 -2.3 -4.6 putative cytochrome oxidase biogenesis protein compare
PP_0913 -2.3 -5.8 conserved exported protein of unknown function compare
PP_4217 -2.3 -16.4 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1733 -2.2 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_1664 -2.2 -3.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1623 -2.2 -11.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_0833 -2.2 -2.3 queuine tRNA-ribosyltransferase compare
PP_1654 -2.2 -3.4 cysteine synthase B compare
PP_3365 -2.2 -1.8 Acetolactate synthase compare
PP_1734 -2.1 -4.4 Probable septum site-determining protein MinC compare
PP_0180 -2.1 -10.2 putative cytochrome c family protein compare
PP_1738 -2.1 -6.9 conserved exported protein of unknown function conserved
PP_0339 -2.1 -2.0 Pyruvate dehydrogenase E1 component compare
PP_1386 -2.1 -6.5 Probable efflux pump periplasmic linker TtgA compare
PP_4514 -2.1 -9.2 putative esterase of the alpha-beta hydrolase superfamily conserved
PP_1058 -2.0 -11.5 conserved protein of unknown function compare
PP_2568 -2.0 -1.8 Ring-cleaving dioxygenase compare
PP_1268 -2.0 -5.8 putative HtrA suppressor protein sohA compare
PP_4264 -2.0 -6.8 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_1779 -2.0 -4.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2331 -1.9 -3.9 conserved membrane protein of unknown function compare
PP_5327 -1.9 -4.0 putative phosphate ABC transporter, permease subunit compare
PP_1656 -1.9 -7.0 ATP:GTP 3'-pyrophosphotransferase compare
PP_4941 -1.9 -4.8 conserved exported protein of unknown function compare
PP_1001 -1.9 -3.7 arginine deiminase compare
PP_1232 -1.8 -9.1 conserved exported protein of unknown function compare
PP_0888 -1.8 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4126 -1.8 -2.3 NADH-quinone oxidoreductase subunit I compare
PP_3428 -1.8 -6.1 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_5331 -1.8 -4.8 Long-chain acyl-CoA thioester hydrolase compare
PP_4124 -1.8 -3.9 NADH-quinone oxidoreductase subunit G compare
PP_1737 -1.7 -7.2 conserved protein of unknown function conserved
PP_4722 -1.7 -3.7 Transcription elongation factor GreA compare
PP_4121 -1.7 -4.9 NADH-quinone oxidoreductase subunit C/D compare
PP_5058 -1.7 -5.3 Carboxy-terminal-processing protease compare
PP_4803 -1.7 -6.0 D-alanyl-D-alanine carboxypeptidase compare
PP_1198 -1.7 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1215 -1.7 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_5309 -1.6 -6.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3300 -1.6 -7.3 Transcriptional regulator, tetR family compare
PP_0184 -1.6 -5.8 Argininosuccinate lyase compare
PP_1217 -1.6 -4.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4120 -1.6 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1000 -1.5 -4.4 ornithine carbamoyltransferase, catabolic compare
PP_0872 -1.5 -5.5 Peptide chain release factor 3 compare
PP_3474 -1.5 -4.8 putative Curli fiber protein CsgE compare
PP_4942 -1.5 -1.9 conserved protein of unknown function compare
PP_4880 -1.5 -6.7 exoribonuclease R compare
PP_4122 -1.5 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4699 -1.4 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2087 -1.4 -2.2 CmpX protein compare
PP_4944 -1.4 -3.0 Carbamoyltransferase compare
PP_0401 -1.4 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_2328 -1.4 -3.4 Phosphoadenosine phosphosulfate reductase compare
PP_5145 -1.4 -10.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1871 -1.4 -5.7 Protease HtpX compare
PP_4004 -1.4 -4.0 DNA translocase FtsK compare
PP_5289 -1.4 -3.3 Acetylglutamate kinase compare
PP_4215 -1.4 -2.6 pyoverdine biosynthesis related protein compare
PP_4570 -1.4 -8.5 conserved protein of unknown function conserved
PP_1444 -1.4 -8.5 quinoprotein glucose dehydrogenase compare
PP_4546 -1.4 -3.4 ATP-dependent helicase HrpA compare
PP_0916 -1.4 -3.4 Amino acid transporter LysE compare
PP_0282 -1.3 -5.1 L-arginine ABC transporter - periplasmic binding subunit conserved
PP_5253 -1.3 -2.3 Arylesterase compare
PP_4131 -1.3 -4.3 NADH-quinone oxidoreductase subunit N compare
PP_5317 -1.3 -3.5 Probable chorismate pyruvate-lyase compare
PP_4701 -1.3 -1.1 glucose-6-phosphate isomerase compare
PP_2130 -1.3 -6.8 putative Soluble lytic transglycosylase compare
PP_2142 -1.3 -2.7 Cell division inhibitor SulA compare
PP_1553 -1.3 -1.9 conserved protein of unknown function compare
PP_5216 -1.2 -1.4 exopolyphosphatase compare
PP_4923 -1.2 -6.1 Outer membrane efflux protein compare
PP_3903 -1.2 -1.9 conserved protein of unknown function compare
PP_0138 -1.2 -6.4 conserved membrane protein of unknown function compare
PP_0130 -1.2 -5.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase compare
PP_0164 -1.2 -3.8 conserved protein of unknown function compare
PP_2302 -1.2 -3.5 DNA-binding, ATP-dependent protease compare
PP_4892 -1.2 -3.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4130 -1.2 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1078 -1.2 -4.8 putative ABC transporter, ATP-binding protein compare
PP_0725 -1.2 -3.2 conserved hypothetical TPR repeat protein compare
PP_4961 -1.2 -2.1 putative Lipoprotein compare
PP_0547 -1.2 -4.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4720 -1.2 -2.5 putative RNA binding protein compare
PP_0351 -1.2 -4.2 putative Transmembrane sensor protein compare
PP_4964 -1.2 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0513 -1.2 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_3532 -1.2 -1.7 Transcriptional regulator, AsnC family compare
PP_0917 -1.2 -4.1 Chromosome initiation inhibitor compare
PP_4943 -1.1 -1.8 putative Glycosyl transferase compare
PP_4560 -1.1 -3.1 putative Ribonuclease BN compare
PP_2929 -1.1 -4.8 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4779 -1.1 -8.0 AMP nucleosidase compare
PP_4881 -1.1 -7.2 putative Iron ABC transporter, periplasmic iron-binding protein compare
PP_3596 -1.1 -4.1 D-lysine oxidase compare
PP_3926 -1.1 -1.4 short-chain dehydrogenase compare
PP_4882 -1.1 -5.0 Iron ABC transporter, permease protein compare
PP_5090 -1.1 -1.8 putative cell division protein compare
PP_2898 -1.1 -2.2 conserved exported protein of unknown function compare
PP_2330 -1.1 -2.2 conserved protein of unknown function compare
PP_4835 -1.1 -2.0 conserved exported protein of unknown function compare
PP_5350 -1.1 -3.5 Transcriptional regulator, RpiR family compare
PP_1185 -1.1 -4.5 Outer membrane protein H1 compare
PP_4981 -1.1 -1.1 polyisoprene-binding protein, acidic stress response factor compare
PP_2880 -1.1 -2.5 Transcriptional regulator, TetR family compare
PP_0063 -1.1 -4.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2098 -1.0 -5.4 D-alanyl-D-alanine carboxypeptidase compare
PP_2414 -1.0 -1.6 conserved exported protein of unknown function compare
PP_1079 -1.0 -3.1 Ornithine carbamoyltransferase compare
PP_0393 -1.0 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4058 -1.0 -6.2 1,4-alpha-glucan branching enzyme compare
PP_5486 -1.0 -1.9 conserved protein of unknown function compare
PP_2060 -1.0 -2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_2332 -1.0 -3.2 conserved exported protein of unknown function compare
PP_0760 -1.0 -2.6 conserved membrane protein of unknown function compare
PP_3241 -1.0 -1.2 conserved exported protein of unknown function compare
PP_1270 -1.0 -4.6 Transcriptional regulator, LysR family compare
PP_0959 -1.0 -1.2 phospholipid ABC transporter compare
PP_3999 -1.0 -3.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4268 -1.0 -1.4 nucleoid-associated broad specificity regulator compare
PP_0505 -1.0 -4.1 conserved protein of unknown function compare
PP_5338 -1.0 -2.6 aspartate ammonia-lyase compare
PP_2928 -1.0 -4.2 Saccharopine dehydrogenase compare
PP_3330 -0.9 -6.4 putative Outer membrane ferric siderophore receptor compare
PP_0978 -0.9 -2.5 conserved protein of unknown function compare
PP_0832 -0.9 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1075 -0.9 -3.9 glycerol kinase compare
PP_1635 -0.9 -2.5 DNA-binding response regulator compare
PP_4836 -0.9 -2.6 conserved exported protein of unknown function compare
PP_1598 -0.9 -3.1 regulatory intramembrane protein RIP zinc protease compare
PP_5053 -0.9 -4.6 Protein-export protein SecB compare
PP_0003 -0.9 -2.8 16S RNA methyltransferase compare
PP_4993 -0.9 -3.3 Glutathione synthetase compare
PP_0685 -0.9 -1.5 conserved protein of unknown function compare
PP_2090 -0.9 -3.1 Uroporphyrinogen-III C-methyltransferase compare


Specific Phenotypes

For 23 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms