Experiment set38IT051 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 480 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_4515 +2.3 14.7 Transcriptional regulator, MarR family compare
PP_2889 +2.1 6.9 putative Transmembrane regulator PrtR compare
PP_1650 +2.0 19.7 Sensor protein GacS compare
PP_4099 +2.0 15.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_0951 +1.6 11.9 Ribosome hibernation promoting factor compare
PP_4373 +1.5 12.5 Transcriptional regulator FleQ compare
PP_4353 +1.4 6.1 Flagellar biosynthetic protein fliR compare
PP_4368 +1.4 8.9 flagellar motor switch protein compare
PP_5267 +1.3 2.8 putative cytochrome c5 compare
PP_4370 +1.3 5.1 Flagellar hook-basal body complex protein FliE compare
PP_0905 +1.3 3.5 conserved exported protein of unknown function compare
PP_4369 +1.3 9.2 Flagellar M-ring protein compare
PP_0434 +1.3 5.7 Anhydro-N-acetylmuramic acid kinase compare
PP_4171 +1.3 11.0 conserved exported protein of unknown function compare
PP_4358 +1.2 6.6 flagellar synthesis, switching and energizing component compare
PP_4354 +1.2 2.8 flagellar export apparatus subunit compare
PP_0405 +1.2 8.6 conserved protein of unknown function compare
PP_2145 +1.2 3.2 beta-N-acetylglucosaminidase compare
PP_4060 +1.1 8.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4939 +1.1 3.6 conserved protein of unknown function compare
PP_1355 +1.1 7.8 Muropeptide permease AmpG compare
PP_5202 +1.1 3.3 putative cell division protein compare
PP_1410 +1.1 1.9 conserved protein of unknown function compare
PP_4367 +1.1 5.5 Flagellar assembly protein FliH compare
PP_4356 +1.1 4.9 Flagellar protein FliO compare
PP_4396 +1.1 2.9 conserved protein of unknown function compare
PP_4388 +1.1 9.2 Flagellar hook protein FlgE compare
PP_4355 +1.1 3.1 flagellar export apparatus subunit compare
PP_5502 +1.1 6.0 ribosome modulation factor compare
PP_1824 +1.1 2.5 Smr domain protein compare
PP_4341 +1.1 6.6 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0574 +1.0 8.3 DNA-binding response regulator, LuxR family compare
PP_4199 +1.0 1.7 putative Lipoprotein compare
PP_0789 +1.0 4.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4385 +1.0 4.7 flagellar basal-body rod protein FlgG compare
PP_4366 +1.0 7.5 flagellum-specific ATP synthase compare
PP_4389 +1.0 6.1 Flagellar basal-body rod modification protein FlgD compare
PP_4365 +1.0 6.1 Flagellar protein FliJ compare
PP_2847 +1.0 2.6 Urease accessory protein UreJ compare
PP_4352 +1.0 7.8 flagellin export apparatus, substrate specificity protein compare
PP_3892 +0.9 1.9 conserved protein of unknown function compare
PP_1803 +0.9 7.6 UDP-sugar epimerase compare
PP_4344 +0.9 6.2 flagellar export pore protein compare
PP_4359 +0.9 6.4 Flagellar protein FliL compare
PP_4383 +0.9 5.2 Flagellar P-ring protein compare
PP_2327 +0.9 4.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4390 +0.9 5.0 flagellar basal-body rod protein FlgC compare
PP_2226 +0.9 3.4 putative K(+)/H(+) antiporter subunit F compare
PP_3434 +0.9 2.4 conserved protein of unknown function compare
PP_3481 +0.8 2.4 conserved exported protein of unknown function compare
PP_2340 +0.8 2.9 conserved protein of unknown function compare
PP_1318 +0.8 4.3 Cytochrome b compare
PP_4470 +0.8 2.5 putative transcriptional regulator (Arc domain-containing) compare
PP_3971 +0.8 1.6 conserved protein of unknown function compare
PP_4382 +0.8 5.2 Peptidoglycan hydrolase FlgJ compare
PP_5604 +0.8 1.8 putative subtilisin-like serine protease compare
PP_1113 +0.8 5.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4642 +0.8 1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_2168 +0.8 5.5 Transaldolase compare
PP_2892 +0.8 5.9 conserved exported protein of unknown function compare
PP_4391 +0.8 3.9 flagellar basal-body rod protein FlgB compare
PP_4361 +0.8 3.6 Flagellar hook-length control protein FliK compare
PP_1742 +0.8 3.2 conserved inner membrane protein of unknown function compare
PP_0803 +0.8 4.8 Protein secretion ABC efflux system, membrane fusion protein compare
PP_0185 +0.8 6.1 Positive alginate biosynthesis regulatory protein compare
PP_1096 +0.8 1.2 putative electron transport complex protein compare
PP_0805 +0.8 5.5 Outer membrane efflux protein compare
PP_4143 +0.8 4.1 conserved protein of unknown function compare
PP_1774 +0.8 2.2 conserved exported protein of unknown function compare
PP_2959 +0.8 3.1 Alkylhydroperoxidase AhpD domain protein compare
PP_4381 +0.8 5.9 Flagellar hook-associated protein FlgK compare
PP_3043 +0.8 2.6 conserved protein of unknown function compare
PP_2390 +0.7 4.8 Transcriptional regulator, LysR family compare
PP_1775 +0.7 3.4 Metallo-beta-lactamase family protein compare
PP_0589 +0.7 4.4 Bcr/CflA family multidrug resistance transporter compare
PP_4337 +0.7 3.9 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_1801 +0.7 5.1 Glycosyl transferase WbpY compare
PP_4251 +0.7 2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_3487 +0.7 2.0 conserved exported protein of unknown function compare
PP_1214 +0.7 1.5 putative transcriptional regulatory protein compare
PP_4384 +0.7 5.4 Flagellar L-ring protein compare
PP_1808 +0.7 2.7 glucose-6-phosphate isomerase compare
PP_3730 +0.7 1.0 Transcriptional regulatory protein AruR compare
PP_0784 +0.7 2.3 conserved protein of unknown function compare
PP_1387 +0.7 3.2 Probable HTH-type transcriptional regulator TtgR compare
PP_1167 +0.7 2.5 D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) compare
PP_5594 +0.7 1.8 conserved protein of unknown function compare
PP_1683 +0.7 1.6 Transcriptional regulator, MarR family compare
PP_2499 +0.7 1.3 conserved protein of unknown function compare
PP_2922 +0.7 2.3 Urea amidolyase-related protein compare
PP_0674 +0.7 5.3 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4196 +0.7 1.7 conserved exported protein of unknown function compare
PP_1776 +0.7 5.6 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1805 +0.7 5.8 Polysaccharide biosynthesis protein compare
PP_0806 +0.7 6.5 putative Surface adhesion protein compare
PP_2049 +0.7 3.7 Alcohol dehydrogenase, iron-containing compare
PP_3323 +0.7 2.6 CobW/P47K family protein compare
PP_5453 +0.7 0.8 conserved protein of unknown function compare
PP_0261 +0.7 3.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2031 +0.7 2.6 conserved protein of unknown function compare
PP_5505 +0.7 2.2 conserved transmembrane protein of unknown function compare
PP_3110 +0.7 1.2 protein of unknown function compare
PP_5644 +0.7 3.1 conserved membrane protein of unknown function compare
PP_0967 +0.7 4.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1918 +0.7 4.7 septation protein compare
PP_1544 +0.7 2.8 conserved protein of unknown function compare
PP_0246 +0.7 1.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_4172 +0.6 3.2 conserved exported protein of unknown function compare
PP_1903 +0.6 1.6 putative phosphotyrosine-protein phosphatase compare
PP_1907 +0.6 2.0 Hydrolase, haloacid dehalogenase-like family compare
PP_5139 +0.6 2.6 cadmium translocating P-type ATPase compare
PP_1069 +0.6 2.7 glutamate / aspartate ABC transporter - permease subunit compare
PP_4173 +0.6 4.2 Sensor histidine kinase/response regulator compare
PP_5007 +0.6 1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4262 +0.6 1.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3541 +0.6 2.6 Transporter, MgtC family compare
PP_4386 +0.6 2.6 flagellar basal-body rod protein FlgF compare
PP_0984 +0.6 2.0 conserved membrane protein of unknown function compare
PP_4372 +0.6 2.2 Sensory box histidine kinase FleS compare
PP_4910 +0.6 1.6 conserved protein of unknown function compare
PP_2747 +0.6 1.6 conserved protein of unknown function compare
PP_4073 +0.6 1.6 conserved exported protein of unknown function compare
PP_5092 +0.6 3.6 putative exported NLP/P60 protein compare
PP_0340 +0.6 4.9 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0928 +0.6 4.2 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_5241 +0.6 2.1 DNA-binding response regulator, LuxR family compare
PP_4394 +0.6 2.7 flagella basal body P-ring formation protein compare
PP_0225 +0.6 3.4 sulfur compound ABC transporter - ATP-binding subunit compare
PP_3052 +0.6 0.9 conserved protein of unknown function compare
PP_4904 +0.6 3.8 Flagellar motor rotation protein compare
PP_2029 +0.6 1.7 von Willebrand factor type A domain protein compare
PP_2326 +0.6 2.7 Universal stress protein compare
PP_4378 +0.6 4.9 flagellin, filament structural protein compare
PP_4094 +0.6 2.1 conserved protein of unknown function compare
PP_1397 +0.6 1.9 conserved protein of unknown function compare
PP_4268 +0.6 0.7 nucleoid-associated broad specificity regulator compare
PP_1827 +0.6 2.4 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_0190 +0.6 3.0 putative disulfide bond formation protein B compare
PP_2773 +0.6 0.9 conserved protein of unknown function compare
PP_2462 +0.6 1.4 conserved protein of unknown function compare
PP_1208 +0.6 1.4 conserved protein of unknown function, SlyX family compare
PP_3392 +0.6 0.7 conserved protein of unknown function compare
PP_2893 +0.6 3.7 conserved exported protein of unknown function compare
PP_2684 +0.6 1.9 conserved membrane protein of unknown function compare
PP_4380 +0.5 4.3 Flagellar hook-associated protein FlgL compare
PP_4336 +0.5 2.5 flagellar motor rotation protein compare
PP_2602 +0.5 1.7 putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
PP_0126 +0.5 2.2 Cytochrome c4 compare
PP_1417 +0.5 1.6 putative Tricarboxylate transport protein TctB compare
PP_5073 +0.5 1.5 conserved exported protein of unknown function compare
PP_4666 +0.5 2.8 3-hydroxyisobutyrate dehydrogenase compare
PP_0878 +0.5 2.4 dipeptide ABC transporter, binding subunit compare
PP_5005 +0.5 3.8 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4236 +0.5 2.3 putative Thiol:disulfide interchange protein dsbE compare
PP_4238 +0.5 1.9 conserved protein of unknown function compare
PP_3318 +0.5 1.5 conserved protein of unknown function compare
PP_1087 +0.5 3.1 Outer membrane protein, OmpA family compare
PP_0353 +0.5 2.8 Exonuclease compare
PP_2061 +0.5 1.4 conserved protein of unknown function compare
PP_1825 +0.5 1.6 conserved exported protein of unknown function compare
PP_4418 +0.5 2.0 conserved protein of unknown function compare
PP_1794 +0.5 3.5 conserved hypothetical protein compare
PP_3935 +0.5 1.7 conserved protein of unknown function compare
PP_2441 +0.5 1.0 conserved protein of unknown function compare
PP_0276 +0.5 0.9 Transcriptional regulator, Cro/CI family compare
PP_3081 +0.5 2.1 conserved protein of unknown function compare
PP_0292 +0.5 1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0260 +0.5 2.9 ADP-sugar pyrophosphorylase compare
PP_2450 +0.5 2.5 conserved protein of unknown function compare
PP_2550 +0.5 2.2 putative transcriptional regulatory protein compare
PP_1795 +0.5 3.6 conserved protein of unknown function compare
PP_3671 +0.5 2.2 Oxidoreductase, aldo/keto reductase family compare
PP_2416 +0.5 1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_2814 +0.5 1.5 conserved protein of unknown function compare
PP_1793 +0.5 4.4 Glycosyl transferase, group 2 family protein compare
PP_2970 +0.5 1.3 conserved exported protein of unknown function compare
PP_2106 +0.5 2.7 putative Ammonium transporter compare
PP_0848 +0.5 1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2046 +0.5 1.3 Transcriptional regulator, LysR family compare
PP_0841 +0.5 1.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4513 +0.5 1.6 conserved protein of unknown function compare
PP_3322 +0.5 3.0 porphobilinogen synthase (delta-aminolevulinic acid dehydratase) compare
PP_0332 +0.5 1.6 putative Acyltransferase compare
PP_3243 +0.5 1.8 Acetyltransferase, GNAT family compare
PP_5499 +0.5 1.1 conserved protein of unknown function compare
PP_1112 +0.5 2.8 conserved membrane protein of unknown function compare
PP_1576 +0.5 1.6 putative Immunity protein compare
PP_0435 +0.5 2.4 Peptidase, M23/M37 family compare
PP_1412 +0.5 3.4 3-hydroxyisobutyryl-CoA hydrolase compare
PP_0942 +0.5 3.3 regulatory protease compare
PP_4233 +0.5 1.9 putative Oxidoreductase, small subunit compare
PP_1834 +0.5 1.7 conserved protein of unknown function compare
PP_0289 +0.5 2.1 Imidazoleglycerol-phosphate dehydratase compare
PP_2459 +0.5 1.4 ribose pyranase compare
PP_2103 +0.5 1.1 conserved protein of unknown function compare
PP_5003 +0.5 3.3 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_2186 +0.5 1.1 putative Formate dehydrogenase, delta subunit compare
PP_5070 +0.5 2.3 ParA family protein compare
PP_2806 +0.5 2.5 Transcriptional regulator, TetR family compare
PP_1493 +0.5 1.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare


Specific Phenotypes

For 23 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms