Experiment set38IT051 for Pseudomonas putida KT2440
R2A with Fusaric acid 480 ug/mL
Group: stressMedia: R2A + Fusaric acid (480 ug/mL)
Culturing: Putida_ML5, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Cat_Manuel on 28-Jun-22
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Specific Phenotypes
For 23 genes in this experiment
For stress Fusaric acid in Pseudomonas putida KT2440
For stress Fusaric acid across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Fructose and mannose metabolism
- Glycine, serine and threonine metabolism
- Benzoxazinone biosynthesis
- Nucleotide sugars metabolism
- Porphyrin and chlorophyll metabolism
- Diterpenoid biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| D-mannose degradation I | 2 | 1 | 1 |
| D-mannose degradation II | 2 | 1 | 1 |
| β-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation | 3 | 2 | 1 |
| mannitol biosynthesis | 3 | 1 | 1 |
| GDP-mannose biosynthesis | 4 | 4 | 1 |
| heme b biosynthesis II (oxygen-independent) | 4 | 3 | 1 |
| mannitol degradation II | 4 | 2 | 1 |
| 1,5-anhydrofructose degradation | 5 | 2 | 1 |
| superpathway of heme b biosynthesis from uroporphyrinogen-III | 6 | 4 | 1 |
| β-(1,4)-mannan degradation | 7 | 2 | 1 |
| 3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic) | 9 | 3 | 1 |
| peptidoglycan recycling II | 10 | 8 | 1 |
| colanic acid building blocks biosynthesis | 11 | 9 | 1 |
| peptidoglycan recycling I | 14 | 10 | 1 |
| superpathway of GDP-mannose-derived O-antigen building blocks biosynthesis | 14 | 7 | 1 |
| superpathway of bacteriochlorophyll a biosynthesis | 26 | 6 | 1 |