Experiment set38IT050 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 480 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_1150 -6.1 -9.5 putative Membrane protein compare
PP_1428 -5.9 -4.1 Sigma factor AlgU negative regulatory protein compare
PP_1151 -5.9 -8.4 conserved protein of unknown function compare
PP_0345 -5.5 -6.5 putative Heptose kinase WapP compare
PP_5095 -5.5 -3.4 pyrroline-5-carboxylate reductase compare
PP_0346 -5.4 -8.6 putative Heptose kinase WapQ compare
PP_2903 -5.4 -3.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0856 -5.3 -8.1 conserved lipoprotein of unknown function compare
PP_4799 -5.2 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5084 -5.2 -16.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2402 -5.2 -3.6 putative Sensor histidine kinase compare
PP_0855 -5.0 -5.8 conserved protein of unknown function compare
PP_0691 -5.0 -5.3 Glutamate 5-kinase compare
PP_4937 -4.7 -8.3 toluene tolerance protein compare
PP_4700 -4.7 -3.2 pantothenate synthetase compare
PP_2163 -4.5 -9.5 VacJ lipoprotein compare
PP_4265 -4.4 -4.5 DNA-binding transcriptional dual regulator compare
PP_0959 -4.4 -3.7 phospholipid ABC transporter compare
PP_4724 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_1654 -4.2 -2.9 cysteine synthase B compare
PP_4895 -4.2 -6.3 tRNA dimethylallyltransferase compare
PP_1152 -4.0 -7.3 putative membrane fusion efflux protein compare
PP_0127 -3.9 -6.0 Thiol:disulfide interchange protein compare
PP_4999 -3.8 -2.6 dihydroorotase-like protein compare
PP_0809 -3.8 -9.6 disulfide bond formation protein B compare
PP_4902 -3.8 -4.5 Oligoribonuclease compare
PP_4214 -3.8 -5.4 pyoverdine biosynthesis related protein compare
PP_0833 -3.8 -3.7 queuine tRNA-ribosyltransferase compare
PP_0961 -3.8 -7.0 toluene tolerance protein compare
PP_1384 -3.7 -7.9 Probable efflux pump outer membrane protein TtgC compare
PP_4693 -3.7 -6.6 RNA polymerase-binding transcription factor DksA compare
PP_0846 -3.6 -2.4 DnaK-like molecular chaperone specific for IscU compare
PP_1325 -3.6 -9.0 putative lipoprotein compare
PP_4342 -3.4 -5.3 flagellar synthesis regulator, putative ATPase compare
PP_1664 -3.4 -5.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_1898 -3.3 -3.0 MotA/TolQ/ExbB proton channel family protein compare
PP_0958 -3.2 -6.4 phospholipid ABC transporter ATP-binding subunit compare
PP_4723 -3.2 -4.4 Carbamoyl-phosphate synthase large chain compare
PP_4804 -3.1 -4.6 RlpA-like lipoprotein compare
PP_2379 -3.0 -4.5 putative cytochrome oxidase biogenesis protein compare
PP_1994 -3.0 -3.2 tRNA pseudouridine (38-40)synthase compare
PP_0719 -2.9 -3.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0960 -2.8 -6.4 phospholipid ABC transporter binding protein compare
PP_4860 -2.8 -10.2 putative Mannose-6-phosphate isomerase conserved
PP_4217 -2.8 -16.0 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_1187 -2.8 -7.5 sensor protein compare
PP_4126 -2.8 -3.3 NADH-quinone oxidoreductase subunit I compare
PP_0180 -2.7 -11.8 putative cytochrome c family protein compare
PP_4785 -2.7 -3.8 conserved exported protein of unknown function compare
PP_2880 -2.7 -3.2 Transcriptional regulator, TetR family compare
PP_4262 -2.6 -3.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2320 -2.6 -12.0 conserved exported protein of unknown function compare
PP_4008 -2.6 -6.1 ATP-dependent serine protease compare
PP_4129 -2.6 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1385 -2.4 -10.7 Probable efflux pump membrane transporter TtgB compare
PP_4941 -2.4 -6.6 conserved exported protein of unknown function compare
PP_1734 -2.4 -5.4 Probable septum site-determining protein MinC compare
PP_1623 -2.4 -10.9 RNA polymerase, sigma S (sigma 38) factor compare
PP_0908 -2.4 -5.3 conserved exported protein of unknown function compare
PP_0393 -2.3 -3.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4136 -2.3 -1.9 Transcriptional regulator, LuxR family compare
PP_4994 -2.3 -4.8 conserved protein of unknown function compare
PP_5328 -2.3 -3.1 putative phosphate transport system permease protein compare
PP_1779 -2.2 -5.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1186 -2.2 -2.9 two component system DNA-binding transcriptional dual regulator compare
PP_1386 -2.2 -5.7 Probable efflux pump periplasmic linker TtgA compare
PP_1663 -2.2 -6.3 conserved exported protein of unknown function compare
PP_0184 -2.2 -6.1 Argininosuccinate lyase compare
PP_1058 -2.2 -13.0 conserved protein of unknown function compare
PP_4699 -2.2 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0909 -2.1 -7.3 conserved exported protein of unknown function compare
PP_2299 -2.1 -4.7 Trigger factor compare
PP_1778 -2.1 -4.0 Lipopolysaccharide ABC export system, permease protein compare
PP_4891 -2.1 -3.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5350 -2.1 -3.8 Transcriptional regulator, RpiR family compare
PP_1237 -2.1 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4213 -2.0 -2.2 putative dipeptidase compare
PP_1738 -2.0 -6.6 conserved exported protein of unknown function conserved
PP_4264 -2.0 -5.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4942 -2.0 -2.1 conserved protein of unknown function compare
PP_2331 -1.9 -4.5 conserved membrane protein of unknown function compare
PP_1656 -1.9 -6.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_0339 -1.9 -3.3 Pyruvate dehydrogenase E1 component compare
PP_4944 -1.9 -3.4 Carbamoyltransferase compare
PP_1034 -1.8 -7.5 multicopper oxidase compare
PP_0913 -1.8 -4.1 conserved exported protein of unknown function compare
PP_2000 -1.8 -2.4 amidophosphoribosyl transferase compare
PP_4215 -1.8 -3.4 pyoverdine biosynthesis related protein compare
PP_4379 -1.7 -4.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1224 -1.7 -7.4 periplasmic subunit of the TolQRA transport system compare
PP_0888 -1.7 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_5706 -1.7 -1.7 Sec translocation complex - SecG subunit compare
PP_3428 -1.7 -5.6 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_4514 -1.7 -8.7 putative esterase of the alpha-beta hydrolase superfamily conserved
PP_1737 -1.7 -6.2 conserved protein of unknown function conserved
PP_0910 -1.7 -5.3 conserved exported protein of unknown function compare
PP_4121 -1.6 -5.0 NADH-quinone oxidoreductase subunit C/D compare
PP_1099 -1.6 -1.7 Cold shock protein CapB compare
PP_3300 -1.6 -5.6 Transcriptional regulator, tetR family compare
PP_0962 -1.6 -1.8 toluene-tolerance protein compare
PP_4880 -1.6 -7.8 exoribonuclease R compare
PP_5317 -1.6 -2.9 Probable chorismate pyruvate-lyase compare
PP_1198 -1.6 -3.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2322 -1.6 -5.8 Major outer membrane lipoprotein compare
PP_4570 -1.6 -7.9 conserved protein of unknown function conserved
PP_1987 -1.6 -2.4 Methlytransferase, UbiE/COQ5 family compare
PP_0111 -1.6 -4.5 Electron transport protein SCO1/SenC compare
PP_0164 -1.6 -3.7 conserved protein of unknown function compare
PP_5145 -1.5 -10.4 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0282 -1.5 -5.6 L-arginine ABC transporter - periplasmic binding subunit conserved
PP_1232 -1.5 -6.3 conserved exported protein of unknown function compare
PP_2302 -1.5 -3.5 DNA-binding, ATP-dependent protease compare
PP_3580 -1.5 -1.4 conserved protein of unknown function compare
PP_5557 -1.4 -2.4 protein of unknown function compare
PP_4836 -1.4 -3.2 conserved exported protein of unknown function compare
PP_3474 -1.4 -3.7 putative Curli fiber protein CsgE compare
PP_4610 -1.4 -7.8 conserved protein of unknown function containing PepSY-associated TM helix domain compare
PP_0874 -1.4 -2.5 conserved protein of unknown function compare
PP_1362 -1.4 -3.1 pyruvate kinase II compare
PP_1078 -1.4 -4.8 putative ABC transporter, ATP-binding protein compare
PP_0916 -1.4 -2.4 Amino acid transporter LysE compare
PP_1268 -1.4 -2.3 putative HtrA suppressor protein sohA compare
PP_4923 -1.4 -8.2 Outer membrane efflux protein compare
PP_5309 -1.4 -4.6 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0725 -1.3 -4.1 conserved hypothetical TPR repeat protein compare
PP_2928 -1.3 -3.8 Saccharopine dehydrogenase compare
PP_2328 -1.3 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_1444 -1.3 -7.2 quinoprotein glucose dehydrogenase compare
PP_5491 -1.3 -1.3 conserved protein of unknown function with SEC-C motif domain compare
PP_2090 -1.3 -3.0 Uroporphyrinogen-III C-methyltransferase compare
PP_1185 -1.3 -4.7 Outer membrane protein H1 compare
PP_1055 -1.3 -1.8 Type II secretion pathway protein GspN compare
PP_2323 -1.3 -4.6 conserved protein of unknown function compare
PP_4131 -1.3 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_3392 -1.3 -1.7 conserved protein of unknown function compare
PP_2304 -1.3 -4.9 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_2378 -1.3 -1.5 Fe/S biogenesis protein NfuA compare
PP_5699 -1.3 -3.2 putative iron uptake protein compare
PP_4273 -1.3 -1.6 Transcriptional regulator, MerR family compare
PP_1871 -1.3 -4.0 Protease HtpX compare
PP_2720 -1.3 -1.4 conserved protein of unknown function compare
PP_0401 -1.2 -2.0 Ribosomal RNA small subunit methyltransferase A compare
PP_4803 -1.2 -5.2 D-alanyl-D-alanine carboxypeptidase compare
PP_0130 -1.2 -6.8 1,6-anhydro-N-acetylmuramyl-L-alanine amidase compare
PP_3014 -1.2 -3.2 conserved exported protein of unknown function compare
PP_1217 -1.2 -4.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2336 -1.2 -2.6 aconitate hydratase 1 compare
PP_4993 -1.2 -3.2 Glutathione synthetase compare
PP_0948 -1.2 -1.3 Phosphocarrier protein HPr compare
PP_1783 -1.2 -2.2 dTDP-glucose pyrophosphorylase compare
PP_2658 -1.2 -3.1 phosphate ABC transporter compare
PP_t10 -1.2 -2.1 tRNA-Pro compare
PP_5110 -1.2 -2.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4227 -1.2 -2.0 conserved protein of unknown function compare
PP_2878 -1.1 -1.7 conserved protein of unknown function compare
PP_1122 -1.1 -2.0 OmpA family protein compare
PP_2932 -1.1 -4.6 Amidase family protein compare
PP_5327 -1.1 -2.5 putative phosphate ABC transporter, permease subunit compare
PP_5058 -1.1 -3.9 Carboxy-terminal-processing protease compare
PP_5430 -1.1 -1.9 protein of unknown function compare
PP_3946 -1.1 -1.6 HTH-type transcriptional repressor NicR compare
PP_2330 -1.1 -3.0 conserved protein of unknown function compare
PP_1733 -1.1 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4779 -1.1 -7.9 AMP nucleosidase compare
PP_2929 -1.1 -4.5 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_4560 -1.1 -3.0 putative Ribonuclease BN compare
PP_5329 -1.1 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0063 -1.1 -2.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4124 -1.1 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_1001 -1.1 -2.5 arginine deiminase compare
PP_2147 -1.1 -3.4 conserved exported protein of unknown function compare
PP_1451 -1.1 -3.0 conserved exported protein of unknown function compare
PP_3999 -1.1 -3.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2332 -1.0 -3.0 conserved exported protein of unknown function compare
PP_4005 -1.0 -3.7 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4882 -1.0 -5.9 Iron ABC transporter, permease protein compare
PP_4499 -1.0 -2.9 putative maturation enzyme compare
PP_1128 -1.0 -1.9 OmpA family protein compare
PP_2900 -1.0 -1.8 conserved protein of unknown function compare
PP_3903 -1.0 -1.7 conserved protein of unknown function compare
PP_3508 -1.0 -3.4 Protein CobW compare
PP_0697 -1.0 -4.0 ribosomal-protein-S18-alanine N-acetyltransferase compare
PP_1021 -1.0 -3.7 DNA-binding transcriptional regulator compare
PP_1646 -1.0 -2.3 putative Thioredoxin compare
PP_1273 -1.0 -3.8 putative Multidrug efflux MFS outer membrane protein compare
PP_0832 -1.0 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4340 -1.0 -2.3 response regulator for chemotactic signal transduction compare
PP_1468 -1.0 -2.0 Tyrosine recombinase XerD compare
PP_1088 -1.0 -5.7 Argininosuccinate synthase compare
PP_5393 -1.0 -1.5 putative metal-binding chaperone compare
PP_1153 -0.9 -1.6 putative lipoprotein compare
PP_4130 -0.9 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4004 -0.9 -3.2 DNA translocase FtsK compare
PP_1000 -0.9 -2.9 ornithine carbamoyltransferase, catabolic compare
PP_1079 -0.9 -3.6 Ornithine carbamoyltransferase compare
PP_5310 -0.9 -4.7 junction-specific ATP-dependent DNA helicase compare
PP_4480 -0.9 -3.8 arginine N-succinyltransferase, subunit alpha compare
PP_4571 -0.9 -4.2 cysteine synthase A compare
PP_2472 -0.9 -4.6 putative transcriptional regulator, MerR family compare
PP_5609 -0.9 -2.7 conserved protein of unknown function compare


Specific Phenotypes

For 22 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms