Experiment set38IT050 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 480 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_4515 +2.2 14.5 Transcriptional regulator, MarR family compare
PP_3971 +1.9 4.1 conserved protein of unknown function compare
PP_2889 +1.9 4.8 putative Transmembrane regulator PrtR compare
PP_5582 +1.6 3.3 conserved protein of unknown function compare
PP_4370 +1.5 4.3 Flagellar hook-basal body complex protein FliE compare
PP_1650 +1.5 14.3 Sensor protein GacS compare
PP_4099 +1.4 11.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4355 +1.4 3.8 flagellar export apparatus subunit compare
PP_4369 +1.4 9.7 Flagellar M-ring protein compare
PP_4828 +1.4 2.6 Precorrin-8X methylmutase compare
PP_0951 +1.4 7.6 Ribosome hibernation promoting factor compare
PP_4373 +1.3 9.8 Transcriptional regulator FleQ compare
PP_4353 +1.3 5.5 Flagellar biosynthetic protein fliR compare
PP_1096 +1.2 1.8 putative electron transport complex protein compare
PP_3938 +1.2 2.4 conserved protein of unknown function compare
PP_4368 +1.2 7.7 flagellar motor switch protein compare
PP_0025 +1.2 2.1 hypothetical protein compare
PP_5502 +1.2 6.9 ribosome modulation factor compare
PP_4367 +1.2 4.0 Flagellar assembly protein FliH compare
PP_4939 +1.2 3.5 conserved protein of unknown function compare
PP_4365 +1.2 4.3 Flagellar protein FliJ compare
PP_2327 +1.2 4.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4388 +1.1 8.6 Flagellar hook protein FlgE compare
PP_4910 +1.1 2.8 conserved protein of unknown function compare
PP_4171 +1.1 9.8 conserved exported protein of unknown function compare
PP_4060 +1.1 8.3 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4386 +1.1 5.7 flagellar basal-body rod protein FlgF compare
PP_5267 +1.1 1.8 putative cytochrome c5 compare
PP_0022 +1.1 1.8 hypothetical protein compare
PP_4366 +1.1 7.7 flagellum-specific ATP synthase compare
PP_4199 +1.0 1.6 putative Lipoprotein compare
PP_4389 +1.0 5.8 Flagellar basal-body rod modification protein FlgD compare
PP_4354 +1.0 5.2 flagellar export apparatus subunit compare
PP_0434 +1.0 5.3 Anhydro-N-acetylmuramic acid kinase compare
PP_4344 +1.0 5.7 flagellar export pore protein compare
PP_4341 +1.0 6.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5610 +1.0 2.5 protein of unknown function compare
PP_0574 +1.0 7.5 DNA-binding response regulator, LuxR family compare
PP_1918 +0.9 7.3 septation protein compare
PP_2044 +0.9 2.2 conserved inner membrane protein of unknown function compare
PP_4361 +0.9 5.4 Flagellar hook-length control protein FliK compare
PP_1261 +0.9 3.6 2-ketoaldonate reductase / hydroxypyruvate/glyoxylate reductase compare
PP_1038 +0.9 2.3 conserved protein of unknown function compare
PP_5604 +0.9 1.7 putative subtilisin-like serine protease compare
PP_4358 +0.9 5.1 flagellar synthesis, switching and energizing component compare
PP_4385 +0.9 5.6 flagellar basal-body rod protein FlgG compare
PP_0429 +0.9 4.8 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2168 +0.9 5.9 Transaldolase compare
PP_1355 +0.9 5.5 Muropeptide permease AmpG compare
PP_4383 +0.9 3.9 Flagellar P-ring protein compare
PP_4381 +0.9 6.6 Flagellar hook-associated protein FlgK compare
PP_5475 +0.9 1.9 conserved protein of unknown function compare
PP_1008 +0.9 3.5 RNA polymerase subunit sigma-24 compare
PP_4390 +0.9 4.6 flagellar basal-body rod protein FlgC compare
PP_4384 +0.8 5.4 Flagellar L-ring protein compare
PP_5453 +0.8 1.1 conserved protein of unknown function compare
PP_1824 +0.8 2.1 Smr domain protein compare
PP_0674 +0.8 5.8 ADP/ATP ratio sensor and inhibitor of translation compare
PP_2893 +0.8 5.7 conserved exported protein of unknown function compare
PP_2972 +0.8 2.0 conserved protein of unknown function compare
PP_4263 +0.8 4.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_4251 +0.8 2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_4352 +0.8 5.3 flagellin export apparatus, substrate specificity protein compare
PP_3098 +0.8 1.2 conserved protein of unknown function compare
PP_0126 +0.8 2.5 Cytochrome c4 compare
PP_2145 +0.8 1.7 beta-N-acetylglucosaminidase compare
PP_4444 +0.8 4.3 transposase compare
PP_1318 +0.8 3.8 Cytochrome b compare
PP_1774 +0.8 2.7 conserved exported protein of unknown function compare
PP_1113 +0.8 4.9 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4391 +0.8 4.7 flagellar basal-body rod protein FlgB compare
PP_1352 +0.7 3.9 UPF0234 protein PP_1352 compare
PP_2313 +0.7 2.3 conserved membrane protein of unknown function compare
PP_4173 +0.7 5.2 Sensor histidine kinase/response regulator compare
PP_5202 +0.7 2.2 putative cell division protein compare
PP_0185 +0.7 5.1 Positive alginate biosynthesis regulatory protein compare
PP_4143 +0.7 2.3 conserved protein of unknown function compare
PP_0640 +0.7 1.6 conserved protein of unknown function compare
PP_5139 +0.7 3.0 cadmium translocating P-type ATPase compare
PP_4394 +0.7 3.9 flagella basal body P-ring formation protein compare
PP_0893 +0.7 1.7 ThiJ/PfpI family protein compare
PP_2306 +0.7 1.4 conserved exported protein of unknown function compare
PP_4172 +0.7 4.9 conserved exported protein of unknown function compare
PP_0405 +0.7 4.6 conserved protein of unknown function compare
PP_3906 +0.7 2.1 conserved protein of unknown function compare
PP_3198 +0.7 2.1 Ferredoxin, 2Fe-2S compare
PP_4396 +0.7 2.5 conserved protein of unknown function compare
PP_5423 +0.7 0.9 conserved membrane protein of unknown function compare
PP_5073 +0.7 2.0 conserved exported protein of unknown function compare
PP_0967 +0.7 4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4359 +0.7 3.9 Flagellar protein FliL compare
PP_t13 +0.7 2.5 tRNA-Lys compare
PP_2740 +0.7 1.2 Transcriptional regulator, MerR family compare
PP_4337 +0.7 3.7 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2118 +0.7 1.3 conserved protein of unknown function compare
PP_1669 +0.7 3.7 NLP/P60 family protein compare
PP_0805 +0.7 4.1 Outer membrane efflux protein compare
PP_0589 +0.6 3.9 Bcr/CflA family multidrug resistance transporter compare
PP_1214 +0.6 1.2 putative transcriptional regulatory protein compare
PP_0261 +0.6 4.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1381 +0.6 1.1 4-carboxymuconolactone decarboxylase compare
PP_1776 +0.6 4.9 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_5575 +0.6 1.1 conserved protein of unknown function compare
PP_5654 +0.6 1.0 putative phosphotriesterase compare
PP_4100 +0.6 3.6 Transcriptional regulator, Cro/CI family compare
PP_4382 +0.6 4.1 Peptidoglycan hydrolase FlgJ compare
PP_3447 +0.6 1.1 conserved membrane protein of unknown function compare
PP_3487 +0.6 1.2 conserved exported protein of unknown function compare
PP_1683 +0.6 1.7 Transcriptional regulator, MarR family compare
PP_0585 +0.6 0.9 putative metal-sensitive transcriptional regulator, MerR family compare
PP_2695 +0.6 2.3 Transcriptional regulator, LysR family compare
PP_2450 +0.6 3.2 conserved protein of unknown function compare
PP_0355 +0.6 2.2 Response regulator compare
PP_5571 +0.6 1.1 conserved protein of unknown function compare
PP_5005 +0.6 4.3 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_5014 +0.6 2.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_4378 +0.6 5.0 flagellin, filament structural protein compare
PP_2121 +0.6 2.3 putative Lipoprotein compare
PP_3074 +0.6 3.7 D-beta-hydroxybutyrate permease compare
PP_4018 +0.6 1.6 Acetyltransferase, GNAT family compare
PP_5533 +0.6 1.2 conserved protein of unknown function compare
PP_2360 +0.6 1.2 putative type 1 pili subunit CsuA/B protein compare
PP_0880 +0.6 2.8 dipeptide ABC transporter - putative membrane subunit compare
PP_4904 +0.6 3.8 Flagellar motor rotation protein compare
PP_1907 +0.6 2.9 Hydrolase, haloacid dehalogenase-like family compare
PP_2866 +0.6 2.3 FMN-dependent NADH-azoreductase 1 compare
PP_5508 +0.6 0.9 conserved protein of unknown function compare
PP_1554 +0.6 1.3 conserved protein of unknown function compare
PP_0878 +0.6 2.7 dipeptide ABC transporter, binding subunit compare
PP_4356 +0.6 2.0 Flagellar protein FliO compare
PP_4593 +0.6 1.3 conserved protein of unknown function compare
PP_0246 +0.6 1.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_0937 +0.6 2.8 endoribonuclease G (RNAse G) compare
PP_3916 +0.6 1.8 conserved protein of unknown function compare
PP_0841 +0.6 3.2 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_2530 +0.6 1.6 conserved protein of unknown function compare
PP_5152 +0.6 2.8 conserved exported protein of unknown function compare
PP_2404 +0.6 1.1 conserved exported protein of unknown function compare
PP_0241 +0.6 2.2 Transporter compare
PP_1404 +0.6 1.6 conserved protein of unknown function compare
PP_2892 +0.6 4.0 conserved exported protein of unknown function compare
PP_4331 +0.6 4.1 conserved protein of unknown function compare
PP_4952 +0.6 1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1803 +0.6 4.0 UDP-sugar epimerase compare
PP_5241 +0.6 0.9 DNA-binding response regulator, LuxR family compare
PP_3891 +0.6 1.1 conserved protein of unknown function compare
PP_5717 +0.6 1.5 conserved protein of unknown function compare
PP_0803 +0.5 3.6 Protein secretion ABC efflux system, membrane fusion protein compare
PP_2253 +0.5 0.8 Transcriptional regulator, GntR family compare
PP_1795 +0.5 4.1 conserved protein of unknown function compare
PP_5686 +0.5 1.8 protein of unknown function compare
PP_1986 +0.5 0.9 3-isopropylmalate dehydratase small subunit compare
PP_1827 +0.5 3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
PP_5712 +0.5 1.8 conserved protein of unknown function compare
PP_4837 +0.5 1.1 conserved protein of unknown function compare
PP_0827 +0.5 1.9 putative phosphonate transport system permease protein PtxC compare
PP_2539 +0.5 2.2 Transcriptional regulator, LysR family compare
PP_4051 +0.5 2.6 malto-oligosyltrehalose trehalohydrolase compare
PP_1739 +0.5 1.4 conserved membrane protein of unknown function compare
PP_0289 +0.5 2.7 Imidazoleglycerol-phosphate dehydratase compare
PP_t49 +0.5 2.6 tRNA-Met compare
PP_1422 +0.5 2.1 conserved protein of unknown function compare
PP_3481 +0.5 1.3 conserved exported protein of unknown function compare
PP_4261 +0.5 2.2 cation-transporting P-type ATPase compare
PP_4751 +0.5 2.8 Amino acid ABC transporter, ATP-binding protein compare
PP_2715 +0.5 1.0 ArsH protein compare
PP_4406 +0.5 2.1 conserved protein of unknown function compare
PP_5648 +0.5 1.5 conserved exported protein of unknown function compare
PP_0989 +0.5 2.5 glycine cleavage system H protein 1 compare
PP_0806 +0.5 4.7 putative Surface adhesion protein compare
PP_3539 +0.5 1.5 putative Transcriptional regulator compare
PP_1228 +0.5 3.2 Methyl-accepting chemotaxis transducer compare
PP_4911 +0.5 2.3 conserved protein of unknown function compare
PP_4943 +0.5 1.0 putative Glycosyl transferase compare
PP_0044 +0.5 2.4 cobalt-zinc-cadmium resistance protein compare
PP_0119 +0.5 1.7 putative zinc uptake regulation protein ZUR compare
PP_2390 +0.5 2.8 Transcriptional regulator, LysR family compare
PP_0942 +0.5 3.3 regulatory protease compare
PP_5669 +0.5 1.9 ABC transporter related compare
PP_2132 +0.5 1.8 Universal stress protein compare
PP_2240 +0.5 3.7 putative ABC efflux transporter, permease/ATP-binding protein compare
PP_1176 +0.5 0.9 conserved protein of unknown function compare
PP_2307 +0.5 1.2 conserved protein of unknown function compare
PP_1561 +0.5 2.6 putative Phage holin compare
PP_0293 +0.5 1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5163 +0.5 3.1 maltose acetyltransferase compare
PP_3900 +0.5 1.6 hypothetical protein compare
PP_5155 +0.5 1.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1713 +0.5 1.1 Transcriptional regulator PcaQ compare
PP_5167 +0.5 2.4 conserved hypothetical protein compare
PP_5658 +0.5 1.1 protein of unknown function compare
PP_2800 +0.5 1.4 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_5156 +0.5 1.3 conserved exported protein of unknown function compare
PP_2171 +0.5 1.5 Transporter, LysE family compare
PP_5003 +0.5 2.9 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_0928 +0.5 3.3 K+-dependent Na+/Ca+ exchanger related-protein compare
PP_3523 +0.5 1.6 conserved protein of unknown function compare
PP_4109 +0.5 1.1 conserved protein of unknown function compare
PP_2642 +0.5 2.3 Transcriptional regulator, GntR family compare
PP_2290 +0.5 1.5 conserved protein of unknown function compare


Specific Phenotypes

For 22 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms