Experiment set38IT047 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_4874 -5.5 -2.8 50S ribosomal protein L9 compare
PP_3378 -5.2 -1.9 putative 2-ketogluconokinase compare
PP_5095 -5.2 -2.6 pyrroline-5-carboxylate reductase compare
PP_5508 -5.2 -1.3 conserved protein of unknown function compare
PP_4799 -5.0 -3.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0393 -4.8 -3.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1994 -4.5 -3.1 tRNA pseudouridine (38-40)synthase compare
PP_1328 -4.4 -2.3 Protein MraZ compare
PP_0048 -4.2 -1.6 conserved protein of unknown function compare
PP_4265 -4.1 -4.3 DNA-binding transcriptional dual regulator compare
PP_2999 -4.1 -1.5 Glyoxalase family protein compare
PP_0856 -4.0 -6.4 conserved lipoprotein of unknown function compare
PP_2379 -4.0 -5.4 putative cytochrome oxidase biogenesis protein compare
PP_4126 -4.0 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_0719 -4.0 -2.5 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4724 -4.0 -2.7 Carbamoyl-phosphate synthase small chain compare
PP_4129 -3.9 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4999 -3.6 -2.0 dihydroorotase-like protein compare
PP_4263 -3.5 -3.6 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5328 -3.5 -3.4 putative phosphate transport system permease protein compare
PP_4271 -3.5 -1.3 conserved protein of unknown function compare
PP_5706 -3.3 -3.0 Sec translocation complex - SecG subunit compare
PP_4902 -3.2 -3.1 Oligoribonuclease compare
PP_0127 -3.1 -3.3 Thiol:disulfide interchange protein compare
PP_0691 -3.1 -3.0 Glutamate 5-kinase compare
PP_4693 -3.0 -6.4 RNA polymerase-binding transcription factor DksA compare
PP_1764 -2.9 -3.5 Phosphoglycolate phosphatase 2 compare
PP_4723 -2.8 -5.1 Carbamoyl-phosphate synthase large chain compare
PP_1045 -2.8 -1.9 Type II secretion pathway protein XcpP compare
PP_0888 -2.8 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_5279 -2.7 -2.7 conserved protein of unknown function compare
PP_0126 -2.7 -3.3 Cytochrome c4 compare
PP_4342 -2.6 -3.0 flagellar synthesis regulator, putative ATPase compare
PP_4247 -2.6 -1.8 Exonuclease compare
PP_2000 -2.5 -1.8 amidophosphoribosyl transferase compare
PP_1055 -2.5 -1.3 Type II secretion pathway protein GspN compare
PP_5600 -2.5 -1.5 conserved protein of unknown function compare
PP_1654 -2.5 -2.9 cysteine synthase B compare
PP_4204 -2.5 -4.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2402 -2.5 -2.6 putative Sensor histidine kinase compare
PP_1664 -2.5 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1353 -2.4 -2.4 conserved membrane protein of unknown function compare
PP_2857 -2.3 -1.4 conserved exported protein of unknown function compare
PP_1152 -2.3 -4.6 putative membrane fusion efflux protein compare
PP_5471 -2.3 -1.9 putative response regulator receiver protein compare
PP_5216 -2.3 -2.3 exopolyphosphatase compare
PP_1150 -2.3 -3.7 putative Membrane protein compare
PP_3312 -2.2 -1.4 putative Heat shock protein compare
PP_3241 -2.2 -1.3 conserved exported protein of unknown function compare
PP_2378 -2.2 -2.6 Fe/S biogenesis protein NfuA compare
PP_0962 -2.2 -1.7 toluene-tolerance protein compare
PP_4700 -2.2 -2.6 pantothenate synthetase compare
PP_0339 -2.2 -2.1 Pyruvate dehydrogenase E1 component compare
PP_4937 -2.1 -3.3 toluene tolerance protein compare
PP_1778 -2.1 -4.2 Lipopolysaccharide ABC export system, permease protein compare
PP_1706 -2.0 -2.5 Nitrite reductase compare
PP_2371 -2.0 -2.3 Sulphite reductase hemoprotein, beta subunit compare
PP_4793 -2.0 -2.4 conserved protein of unknown function compare
PP_1553 -2.0 -2.5 conserved protein of unknown function compare
PP_1605 -2.0 -1.8 Ribonuclease HII compare
PP_2880 -2.0 -1.2 Transcriptional regulator, TetR family compare
PP_0001 -2.0 -1.3 probable chromosome-partitioning protein compare
PP_t12 -2.0 -1.1 tRNA-Thr compare
PP_1198 -1.9 -3.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4785 -1.9 -3.2 conserved exported protein of unknown function compare
PP_0513 -1.8 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0566 -1.8 -1.0 translation-related factor compare
PP_5093 -1.8 -1.3 twitching motility protein compare
PP_0119 -1.8 -2.9 putative zinc uptake regulation protein ZUR compare
PP_4122 -1.8 -1.2 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5575 -1.8 -1.1 conserved protein of unknown function compare
PP_2650 -1.8 -1.3 putative 4-hydroxybutyrate dehydrogenase compare
PP_3318 -1.7 -1.3 conserved protein of unknown function compare
PP_1001 -1.7 -2.8 arginine deiminase compare
PP_1151 -1.7 -3.0 conserved protein of unknown function compare
PP_3999 -1.7 -4.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0809 -1.7 -5.2 disulfide bond formation protein B compare
PP_4130 -1.7 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1176 -1.7 -1.6 conserved protein of unknown function compare
PP_4362 -1.7 -2.9 conserved protein of unknown function compare
PP_1454 -1.7 -1.6 conserved protein of unknown function compare
PP_1269 -1.7 -1.0 Universal stress protein family compare
PP_4964 -1.7 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_0276 -1.7 -1.1 Transcriptional regulator, Cro/CI family compare
PP_0855 -1.7 -2.0 conserved protein of unknown function compare
PP_0065 -1.6 -2.3 NAD-binding component of TrK potassium transporter compare
PP_3105 -1.6 -1.0 conserved membrane protein of unknown function compare
PP_5327 -1.6 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_2475 -1.6 -3.1 Transcriptional regulator, TetR family compare
PP_0610 -1.6 -2.5 conserved exported protein of unknown function compare
PP_5045 -1.6 -3.3 tRNA sulfurtransferase compare
PP_4701 -1.6 -0.9 glucose-6-phosphate isomerase compare
PP_5329 -1.6 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0960 -1.6 -2.7 phospholipid ABC transporter binding protein compare
PP_3449 -1.6 -1.3 conserved exported protein of unknown function compare
PP_0948 -1.6 -1.1 Phosphocarrier protein HPr compare
PP_4989 -1.6 -2.3 Protein PilJ compare
PP_2820 -1.6 -1.9 HTH-type transcriptional regulator nfxB compare
PP_5529 -1.5 -2.6 putative epimerase compare
PP_4546 -1.5 -2.7 ATP-dependent helicase HrpA compare
PP_5139 -1.5 -3.2 cadmium translocating P-type ATPase compare
PP_1187 -1.5 -3.3 sensor protein compare
PP_3770 -1.5 -2.4 conserved protein of unknown function compare
PP_0787 -1.5 -2.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2337 -1.5 -2.4 aconitate isomerase compare
PP_3821 -1.5 -4.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_2550 -1.5 -2.2 putative transcriptional regulatory protein compare
PP_2313 -1.5 -1.1 conserved membrane protein of unknown function compare
PP_4848 -1.5 -1.9 Curved DNA-binding protein compare
PP_2002 -1.4 -2.7 putative enzyme compare
PP_2976 -1.4 -1.0 putative transposase compare
PP_0938 -1.4 -5.4 conserved protein of unknown function compare
PP_4804 -1.4 -2.4 RlpA-like lipoprotein compare
PP_2132 -1.4 -1.6 Universal stress protein compare
PP_4517 -1.4 -1.6 conserved protein of unknown function compare
PP_0346 -1.4 -3.3 putative Heptose kinase WapQ compare
PP_0735 -1.3 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_2923 -1.3 -1.3 conserved protein of unknown function compare
PP_5084 -1.3 -4.2 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5221 -1.3 -1.8 conserved protein of unknown function, UPF0178 family compare
PP_2747 -1.3 -1.4 conserved protein of unknown function compare
PP_1757 -1.3 -2.4 DNA-binding transcriptional dual regulator compare
PP_3938 -1.3 -1.1 conserved protein of unknown function compare
PP_2214 -1.3 -1.9 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0921 -1.2 -2.1 Transcriptional regulator, ArsR family compare
PP_0833 -1.2 -1.4 queuine tRNA-ribosyltransferase compare
PP_1632 -1.2 -1.3 conserved protein of unknown function compare
PP_5324 -1.2 -1.9 Response regulator compare
PP_3017 -1.2 -2.7 O6-methylguanine-DNA methyltransferase compare
PP_0152 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5240 -1.2 -1.9 Response regulator compare
PP_1268 -1.2 -1.6 putative HtrA suppressor protein sohA compare
PP_4561 -1.2 -0.8 stress response protein compare
PP_0738 -1.2 -1.7 conserved protein of unknown function compare
PP_2087 -1.2 -1.7 CmpX protein compare
PP_4214 -1.2 -1.8 pyoverdine biosynthesis related protein compare
PP_0998 -1.2 -2.8 conserved protein of unknown function compare
PP_0184 -1.1 -4.3 Argininosuccinate lyase compare
PP_1428 -1.1 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_4880 -1.1 -4.3 exoribonuclease R compare
PP_4120 -1.1 -1.7 NADH-quinone oxidoreductase subunit B compare
PP_4073 -1.1 -1.1 conserved exported protein of unknown function compare
PP_4532 -1.1 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3164 -1.1 -1.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4124 -1.1 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_4008 -1.1 -2.5 ATP-dependent serine protease compare
PP_0630 -1.1 -0.7 DNA gyrase inhibitor YacG compare
PP_4642 -1.1 -0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_5533 -1.1 -1.0 conserved protein of unknown function compare
PP_4057 -1.1 -2.9 conserved membrane protein of unknown function with autotransporter beta-domain compare
PP_2720 -1.1 -0.9 conserved protein of unknown function compare
PP_4768 -1.1 -1.0 Exonuclease compare
PP_5315 -1.1 -2.0 Rubredoxin-1 compare
PP_0164 -1.1 -2.1 conserved protein of unknown function compare
PP_2307 -1.1 -1.0 conserved protein of unknown function compare
PP_3861 -1.1 -1.6 Phage FluMu protein gp46 compare
PP_0958 -1.1 -1.9 phospholipid ABC transporter ATP-binding subunit compare
PP_3222 -1.1 -2.5 ABC transporter, permease protein compare
PP_2196 -1.0 -1.5 agmatinase compare
PP_1623 -1.0 -5.5 RNA polymerase, sigma S (sigma 38) factor compare
PP_5015 -1.0 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0872 -1.0 -2.5 Peptide chain release factor 3 compare
PP_1702 -1.0 -1.6 Recombination-associated protein RdgC compare
PP_4696 -1.0 -1.7 Nitrogen regulation protein NR(I) compare
PP_2898 -1.0 -1.4 conserved exported protein of unknown function compare
PP_4917 -1.0 -1.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4502 -1.0 -2.4 putative enzyme compare
PP_5675 -1.0 -1.6 conserved protein of unknown function compare
PP_0839 -1.0 -2.0 tRNA Cm32/Um32 methyltransferase compare
PP_4560 -1.0 -2.1 putative Ribonuclease BN compare
PP_5232 -1.0 -1.2 conserved protein of unknown function compare
PP_2777 -1.0 -1.4 putative Acyl carrier protein compare
PP_4156 -1.0 -0.7 Transcriptional regulator, LysR family compare
PP_1898 -1.0 -0.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4338 -1.0 -2.8 Chemotaxis histidine kinase CheA compare
PP_1254 -1.0 -2.8 XenA compare
PP_1066 -1.0 -1.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_2215 -1.0 -1.5 acetyl-CoA acetyltransferase compare
PP_0254 -1.0 -1.8 conserved protein of unknown function compare
PP_3075 -0.9 -1.4 putative transcriptional regulator compare
PP_4482 -0.9 -1.6 Transcriptional regulator, AraC family compare
PP_5162 -0.9 -1.7 conserved exported protein of unknown function compare
PP_5317 -0.9 -2.1 Probable chorismate pyruvate-lyase compare
PP_1763 -0.9 -1.2 putative oxidoreductase compare
PP_5248 -0.9 -0.9 putative hydrolase compare
PP_2320 -0.9 -4.3 conserved exported protein of unknown function compare
PP_0125 -0.9 -1.6 putative cytochrome c-type protein compare
PP_1829 -0.9 -0.8 Hydrolase, alpha/beta fold family compare
PP_2836 -0.9 -1.3 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4988 -0.9 -2.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0677 -0.9 -1.7 putative Lipoprotein compare
PP_1000 -0.9 -1.8 ornithine carbamoyltransferase, catabolic compare
PP_1002 -0.9 -2.8 arginine/ornithine antiporter compare
PP_5313 -0.9 -1.6 DNA-binding protein HU-alpha compare
PP_0292 -0.9 -1.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5558 -0.9 -2.1 putative transcriptional xre family of phage origin compare
PP_0643 -0.9 -1.4 protein of unknown function compare
PP_4571 -0.9 -2.7 cysteine synthase A compare
PP_2640 -0.9 -1.2 Acetyltransferase, GNAT family compare
PP_2159 -0.9 -2.4 Copper-binding protein, plastocyanin/azurin family compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms