Experiment set38IT047 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_1410 +2.0 2.9 conserved protein of unknown function compare
PP_0547 +2.0 8.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4098 +1.9 2.8 UvrABC system protein C compare
PP_5267 +1.5 2.8 putative cytochrome c5 compare
PP_0429 +1.5 6.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3392 +1.5 3.0 conserved protein of unknown function compare
PP_4370 +1.4 3.6 Flagellar hook-basal body complex protein FliE compare
PP_3434 +1.4 2.2 conserved protein of unknown function compare
PP_4199 +1.4 1.7 putative Lipoprotein compare
PP_4396 +1.4 3.0 conserved protein of unknown function compare
PP_2970 +1.3 4.0 conserved exported protein of unknown function compare
PP_2203 +1.3 2.8 conserved protein of unknown function compare
PP_4099 +1.3 11.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4355 +1.3 2.4 flagellar export apparatus subunit compare
PP_4344 +1.2 7.9 flagellar export pore protein compare
PP_1650 +1.2 11.3 Sensor protein GacS compare
PP_3052 +1.2 1.5 conserved protein of unknown function compare
PP_0959 +1.2 1.9 phospholipid ABC transporter compare
PP_1943 +1.2 6.2 formyltetrahydrofolate deformylase compare
PP_3447 +1.1 1.6 conserved membrane protein of unknown function compare
PP_2510 +1.1 2.6 conserved protein of unknown function compare
PP_4354 +1.1 2.2 flagellar export apparatus subunit compare
PP_4368 +1.1 3.9 flagellar motor switch protein compare
PP_5674 +1.1 2.5 conserved protein of unknown function compare
PP_4353 +1.1 5.2 Flagellar biosynthetic protein fliR compare
PP_4386 +1.1 3.6 flagellar basal-body rod protein FlgF compare
PP_5359 +1.1 2.0 CobW/P47K family protein compare
PP_1979 +1.0 2.9 putative Hydrolase compare
PP_2883 +1.0 2.1 conserved protein of unknown function compare
PP_3398 +1.0 1.5 putative Curli fiber surface-exposed nucleator CsgB compare
PP_1110 +1.0 4.6 serine acetyltransferase compare
PP_1344 +1.0 1.8 conserved protein of unknown function compare
PP_2330 +1.0 2.8 conserved protein of unknown function compare
PP_0508 +1.0 2.0 conserved exported protein of unknown function compare
PP_3693 +0.9 1.7 putative Transcriptional regulator MvaT, P16 subunit compare
PP_4352 +0.9 5.6 flagellin export apparatus, substrate specificity protein compare
PP_4814 +0.9 2.5 ATP-dependent protease La domain protein compare
PP_2697 +0.9 2.2 putative oxidoreductase containing a flavin reductase domain compare
PP_2340 +0.9 3.1 conserved protein of unknown function compare
PP_1041 +0.9 1.8 twin arginine protein export complex subunit compare
PP_5008 +0.9 0.7 Poly granule-associated protein compare
PP_5475 +0.9 1.2 conserved protein of unknown function compare
PP_5338 +0.9 2.2 aspartate ammonia-lyase compare
PP_4470 +0.9 2.1 putative transcriptional regulator (Arc domain-containing) compare
PP_0025 +0.9 1.1 hypothetical protein compare
PP_0918 +0.9 5.2 putative 3-beta hydroxysteroid dehydrogenase/isomerase family protein compare
PP_4366 +0.9 5.6 flagellum-specific ATP synthase compare
PP_4388 +0.9 6.0 Flagellar hook protein FlgE compare
PP_0695 +0.8 3.1 conserved protein of unknown function compare
PP_3363 +0.8 2.2 putative thymidylate kinase compare
PP_4223 +0.8 1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5456 +0.8 1.5 conserved protein of unknown function compare
PP_2277 +0.8 3.1 conserved protein of unknown function compare
PP_5483 +0.8 1.8 conserved protein of unknown function compare
PP_4296 +0.8 1.6 conserved exported protein of unknown function compare
PP_4358 +0.8 3.0 flagellar synthesis, switching and energizing component compare
PP_5017 +0.8 0.9 Sec-independent protein translocase protein TatB compare
PP_5486 +0.8 1.5 conserved protein of unknown function compare
PP_4394 +0.8 4.5 flagella basal body P-ring formation protein compare
PP_2049 +0.8 2.4 Alcohol dehydrogenase, iron-containing compare
PP_4390 +0.8 4.7 flagellar basal-body rod protein FlgC compare
PP_2715 +0.8 1.5 ArsH protein compare
PP_0274 +0.8 0.8 putative transcriptional regulator containing HTH domain compare
PP_5705 +0.8 1.6 protein of unknown function compare
PP_5711 +0.8 1.7 protein of unknown function compare
PP_1366 +0.8 1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_3102 +0.8 1.6 conserved protein of unknown function compare
PP_2029 +0.8 1.4 von Willebrand factor type A domain protein compare
PP_2231 +0.8 2.3 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_0768 +0.8 2.4 Response regulator/TPR domain protein compare
PP_3898 +0.7 2.3 conserved protein of unknown function compare
PP_0143 +0.7 3.6 conserved membrane protein of unknown function compare
PP_2222 +0.7 1.6 conserved protein of unknown function compare
PP_2462 +0.7 1.3 conserved protein of unknown function compare
PP_1502 +0.7 2.3 OmpA family protein compare
PP_3837 +0.7 1.7 inner membrane protein of unknown function compare
PP_5597 +0.7 1.4 conserved protein of unknown function compare
PP_1808 +0.7 1.2 glucose-6-phosphate isomerase compare
PP_4361 +0.7 3.8 Flagellar hook-length control protein FliK compare
PP_3522 +0.7 0.9 conserved protein of unknown function compare
PP_0262 +0.7 1.7 conserved protein of unknown function compare
PP_3035 +0.7 1.5 conserved protein of unknown function compare
PP_5537 +0.7 1.5 conserved membrane protein of unknown function compare
PP_0195 +0.7 1.2 conserved protein of unknown function compare
PP_2105 +0.7 2.0 conserved protein of unknown function compare
PP_4367 +0.7 2.7 Flagellar assembly protein FliH compare
PP_0191 +0.7 1.9 Transcriptional regulatory protein AlgQ compare
PP_2229 +0.7 1.5 putative K(+)/H(+) antiporter subunit C compare
PP_5586 +0.7 1.1 exported protein of unknown function compare
PP_4847 +0.7 2.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_1575 +0.7 1.1 conserved protein of unknown function compare
PP_4227 +0.7 1.5 conserved protein of unknown function compare
PP_4369 +0.7 3.1 Flagellar M-ring protein compare
PP_4356 +0.7 1.7 Flagellar protein FliO compare
PP_5541 +0.7 1.7 conserved protein of unknown function compare
PP_5473 +0.7 1.5 putative transcriptional regulator, LuxR family compare
PP_1054 +0.7 1.0 Type II secretion pathway protein XcpZ compare
PP_4419 +0.7 1.0 transposase compare
PP_0536 +0.7 1.9 conserved protein of unknown function compare
PP_2809 +0.7 1.4 conserved membrane protein of unknown function compare
PP_2695 +0.7 2.1 Transcriptional regulator, LysR family compare
PP_5661 +0.7 1.6 putative lipoprotein compare
PP_0352 +0.7 1.3 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4940 +0.7 3.4 Putative glycosyltransferase compare
PP_0760 +0.7 1.7 conserved membrane protein of unknown function compare
PP_2959 +0.6 1.9 Alkylhydroperoxidase AhpD domain protein compare
PP_2785 +0.6 1.9 conserved exported protein of unknown function compare
PP_1109 +0.6 4.7 Transcriptional regulator, GntR family compare
PP_4662 +0.6 1.2 conserved protein of unknown function compare
PP_2680 +0.6 2.1 aldehyde dehydrogenase compare
PP_2318 +0.6 2.1 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_3288 +0.6 3.0 Universal stress protein family compare
PP_2633 +0.6 0.6 conserved protein of unknown function compare
PP_2717 +0.6 1.7 arsenite/antimonite transporter compare
PP_2668 +0.6 1.2 ABC efflux transporter, ATP-binding protein compare
PP_5682 +0.6 2.4 conserved protein of unknown function compare
PP_2847 +0.6 0.8 Urease accessory protein UreJ compare
PP_5229 +0.6 1.5 conserved protein of unknown function compare
PP_2699 +0.6 2.9 conserved protein of unknown function compare
PP_2341 +0.6 1.0 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_5476 +0.6 2.8 conserved protein of unknown function compare
PP_3866 +0.6 1.3 conserved protein of unknown function compare
PP_5143 +0.6 0.9 conserved membrane protein of unknown function compare
PP_4409 +0.6 2.3 Site-specific recombinase, phage integrase family compare
PP_4844 +0.6 1.4 putative Urea ABC transporter, ATP-binding protein compare
PP_3532 +0.6 1.0 Transcriptional regulator, AsnC family compare
PP_4376 +0.6 4.2 flagellar filament capping protein compare
PP_4391 +0.6 2.3 flagellar basal-body rod protein FlgB compare
PP_3332 +0.6 1.6 putative cytochrome c-type protein compare
PP_5687 +0.6 1.7 putative permease of the major facilitator superfamily compare
PP_1845 +0.6 1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_2289 +0.6 2.4 conserved exported protein of unknown function compare
PP_5223 +0.6 1.8 regulator of nucleotide diphosphokinase compare
PP_2499 +0.6 0.9 conserved protein of unknown function compare
PP_5579 +0.6 2.3 conserved protein of unknown function compare
PP_2793 +0.6 0.8 Acyl-CoA dehydrogenase family protein compare
PP_4359 +0.6 3.0 Flagellar protein FliL compare
PP_2726 +0.6 1.5 conserved membrane protein of unknown function compare
PP_2414 +0.6 1.0 conserved exported protein of unknown function compare
PP_2980 +0.6 1.8 conserved protein of unknown function compare
PP_3404 +0.6 1.1 conserved protein of unknown function compare
PP_5339 +0.6 1.4 transcriptional regulator, ornithine utilization compare
PP_0040 +0.6 1.9 hypothetical protein compare
PP_2290 +0.6 1.7 conserved protein of unknown function compare
PP_3336 +0.6 1.2 conserved protein of unknown function compare
PP_4426 +0.6 1.7 Amino acid ABC transporter, permease protein compare
PP_4384 +0.6 3.1 Flagellar L-ring protein compare
PP_5735 +0.6 1.5 conserved hypothetical protein compare
PP_1709 +0.6 1.5 Fumarylacetoacetate hydrolase family protein compare
PP_4817 +0.6 1.3 MaoC domain protein compare
PP_0435 +0.6 2.6 Peptidase, M23/M37 family compare
PP_0693 +0.6 3.4 conserved protein of unknown function compare
PP_5382 +0.6 2.3 putative exported protein compare
PP_0585 +0.6 1.1 putative metal-sensitive transcriptional regulator, MerR family compare
PP_0753 +0.6 2.7 putative Lipoprotein compare
PP_4381 +0.6 3.6 Flagellar hook-associated protein FlgK compare
PP_2435 +0.6 1.8 cysteine desulfurase compare
PP_4385 +0.6 3.0 flagellar basal-body rod protein FlgG compare
PP_5580 +0.6 1.2 protein of unknown function compare
PP_4939 +0.6 2.1 conserved protein of unknown function compare
PP_5SB +0.6 1.0 5S ribosomal RNA compare
PP_3782 +0.6 1.7 conserved protein of unknown function compare
PP_0694 +0.6 1.8 conserved protein of unknown function compare
PP_3204 +0.6 1.9 conserved protein of unknown function compare
PP_4365 +0.6 1.8 Flagellar protein FliJ compare
PP_0232 +0.6 0.7 ATP-binding taurine transporter subunit compare
PP_3712 +0.6 1.9 conserved protein of unknown function compare
PP_4829 +0.6 1.0 putative precorrin-3B synthase compare
PP_0674 +0.6 3.0 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1511 +0.6 2.4 conserved protein of unknown function compare
PP_3283 +0.6 1.6 1,2-epoxyphenylacetyl-CoA isomerase compare
PP_4389 +0.6 1.8 Flagellar basal-body rod modification protein FlgD compare
PP_1789 +0.6 2.0 Hydrolase, haloacid dehalogenase-like family compare
PP_1317 +0.6 1.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5381 +0.6 1.2 hypothetical protein compare
PP_3264 +0.6 1.8 cardiolipin synthase 2 compare
PP_2331 +0.6 2.7 conserved membrane protein of unknown function compare
PP_1303 +0.5 2.2 Sulfate adenylyltransferase subunit 2 compare
PP_2773 +0.5 0.4 conserved protein of unknown function compare
PP_3244 +0.5 1.1 Magnesium transporter, MgtC family compare
PP_1404 +0.5 1.5 conserved protein of unknown function compare
PP_5727 +0.5 1.9 protein of unknown function compare
PP_2540 +0.5 0.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0304 +0.5 1.3 Carnitine uptake ABC transporter, periplasmic component compare
PP_0411 +0.5 2.2 Polyamine ABC transporter, ATP-binding protein compare
PP_1116 +0.5 2.9 Site-specific recombinase, resolvase family compare
PP_0241 +0.5 1.1 Transporter compare
PP_1468 +0.5 1.1 Tyrosine recombinase XerD compare
PP_5685 +0.5 2.1 protein of unknown function compare
PP_4529 +0.5 0.7 conserved protein of unknown function compare
PP_3946 +0.5 0.4 HTH-type transcriptional repressor NicR compare
PP_3198 +0.5 1.0 Ferredoxin, 2Fe-2S compare
PP_2622 +0.5 0.8 conserved protein of unknown function compare
PP_3892 +0.5 0.7 conserved protein of unknown function compare
PP_4705 +0.5 2.1 Glyoxalase compare
PP_0550 +0.5 1.7 conserved protein of unknown function compare
PP_0685 +0.5 0.5 conserved protein of unknown function compare
PP_1544 +0.5 1.1 conserved protein of unknown function compare
PP_0332 +0.5 1.7 putative Acyltransferase compare
PP_2106 +0.5 1.6 putative Ammonium transporter compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms