Experiment set38IT045 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_4265 -5.3 -3.6 DNA-binding transcriptional dual regulator compare
PP_0846 -4.9 -3.0 DnaK-like molecular chaperone specific for IscU compare
PP_4799 -4.9 -3.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -4.4 -8.0 conserved lipoprotein of unknown function compare
PP_4700 -4.3 -2.9 pantothenate synthetase compare
PP_4693 -3.6 -7.1 RNA polymerase-binding transcription factor DksA compare
PP_1654 -3.5 -3.4 cysteine synthase B compare
PP_4999 -3.4 -2.3 dihydroorotase-like protein compare
PP_4804 -3.4 -4.8 RlpA-like lipoprotein compare
PP_0393 -3.3 -4.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4724 -3.3 -4.4 Carbamoyl-phosphate synthase small chain compare
PP_0691 -3.3 -4.2 Glutamate 5-kinase compare
PP_4122 -3.2 -2.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5095 -2.8 -2.1 pyrroline-5-carboxylate reductase compare
PP_1186 -2.7 -4.4 two component system DNA-binding transcriptional dual regulator compare
PP_4723 -2.7 -4.9 Carbamoyl-phosphate synthase large chain compare
PP_0127 -2.7 -4.8 Thiol:disulfide interchange protein compare
PP_4964 -2.6 -4.6 D-erythrose 4-phosphate dehydrogenase compare
PP_1664 -2.5 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_1237 -2.4 -1.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0719 -2.3 -2.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4937 -2.2 -3.6 toluene tolerance protein compare
PP_4943 -2.2 -2.2 putative Glycosyl transferase compare
PP_5216 -2.1 -2.8 exopolyphosphatase compare
PP_2328 -2.0 -4.1 Phosphoadenosine phosphosulfate reductase compare
PP_0164 -2.0 -5.0 conserved protein of unknown function compare
PP_0833 -1.9 -2.5 queuine tRNA-ribosyltransferase compare
PP_2322 -1.8 -4.5 Major outer membrane lipoprotein compare
PP_1152 -1.7 -6.8 putative membrane fusion efflux protein compare
PP_1150 -1.7 -6.0 putative Membrane protein compare
PP_1001 -1.6 -3.0 arginine deiminase compare
PP_0809 -1.6 -6.3 disulfide bond formation protein B compare
PP_1783 -1.6 -3.2 dTDP-glucose pyrophosphorylase compare
PP_2370 -1.5 -2.0 conserved protein of unknown function compare
PP_3481 -1.5 -1.7 conserved exported protein of unknown function compare
PP_5027 -1.5 -2.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4008 -1.5 -4.7 ATP-dependent serine protease compare
PP_0339 -1.5 -2.6 Pyruvate dehydrogenase E1 component compare
PP_1187 -1.5 -5.8 sensor protein compare
PP_4785 -1.4 -3.9 conserved exported protein of unknown function compare
PP_1216 -1.4 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0293 -1.4 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4532 -1.4 -2.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2337 -1.4 -2.0 aconitate isomerase compare
PP_4994 -1.4 -2.7 conserved protein of unknown function compare
PP_0236 -1.4 -2.1 NAD(P)H-dependent FMN reductase subunit compare
PP_2253 -1.3 -1.2 Transcriptional regulator, GntR family compare
PP_0832 -1.3 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1734 -1.3 -4.1 Probable septum site-determining protein MinC compare
PP_4560 -1.3 -3.4 putative Ribonuclease BN compare
PP_4902 -1.3 -2.9 Oligoribonuclease compare
PP_5084 -1.3 -6.5 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1384 -1.3 -6.3 Probable efflux pump outer membrane protein TtgC compare
PP_0855 -1.3 -1.4 conserved protein of unknown function compare
PP_4917 -1.3 -4.1 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2402 -1.3 -2.1 putative Sensor histidine kinase compare
PP_3307 -1.3 -2.1 conserved protein of unknown function compare
PP_3903 -1.2 -1.5 conserved protein of unknown function compare
PP_2681 -1.2 -2.0 coenzyme PQQ synthesis protein D compare
PP_1208 -1.2 -2.2 conserved protein of unknown function, SlyX family compare
PP_3227 -1.2 -3.5 Transcriptional regulator, LysR family compare
PP_4997 -1.1 -1.8 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3874 -1.1 -2.7 conserved protein of unknown function compare
PP_4880 -1.1 -5.9 exoribonuclease R compare
PP_1151 -1.1 -2.4 conserved protein of unknown function compare
PP_4895 -1.1 -1.8 tRNA dimethylallyltransferase compare
PP_1122 -1.1 -1.4 OmpA family protein compare
PP_1994 -1.1 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_3105 -1.1 -1.4 conserved membrane protein of unknown function compare
PP_0346 -1.1 -3.9 putative Heptose kinase WapQ compare
PP_2504 -1.1 -1.5 putative tautomerase K2 compare
PP_1097 -1.0 -1.4 Methionine--tRNA ligase compare
PP_1002 -1.0 -3.3 arginine/ornithine antiporter compare
PP_1000 -1.0 -3.5 ornithine carbamoyltransferase, catabolic compare
PP_1215 -1.0 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_0007 -1.0 -2.4 conserved hypothetical protein compare
PP_0313 -1.0 -1.2 putative electron transfer flavoprotein beta subunit compare
PP_5328 -1.0 -1.7 putative phosphate transport system permease protein compare
PP_0888 -1.0 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4925 -1.0 -2.8 conserved protein of unknown function compare
PP_4342 -0.9 -2.5 flagellar synthesis regulator, putative ATPase compare
PP_0916 -0.9 -1.9 Amino acid transporter LysE compare
PP_t64 -0.9 -2.3 tRNA-Gly compare
PP_1553 -0.9 -2.3 conserved protein of unknown function compare
PP_1217 -0.9 -2.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5327 -0.9 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_1232 -0.9 -4.7 conserved exported protein of unknown function compare
PP_0841 -0.9 -2.4 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4571 -0.9 -3.9 cysteine synthase A compare
PP_1968 -0.9 -3.2 TetR family transcriptional regulator compare
PP_2320 -0.9 -6.0 conserved exported protein of unknown function compare
PP_4247 -0.9 -1.0 Exonuclease compare
PP_1691 -0.9 -1.9 conserved protein of unknown function compare
PP_0938 -0.9 -4.5 conserved protein of unknown function compare
PP_0001 -0.9 -1.0 probable chromosome-partitioning protein compare
PP_2846 -0.8 -1.0 urease accessory protein compare
PP_4004 -0.8 -3.2 DNA translocase FtsK compare
PP_2530 -0.8 -1.8 conserved protein of unknown function compare
PP_4528 -0.8 -0.8 conserved protein of unknown function compare
PP_1390 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4471 -0.8 -2.1 Magnesium transporter compare
PP_2186 -0.8 -2.4 putative Formate dehydrogenase, delta subunit compare
PP_5168 -0.8 -2.9 sulfate/thiosulfate import ATP-binding protein compare
PP_4227 -0.8 -1.6 conserved protein of unknown function compare
PP_1508 -0.8 -2.4 conserved protein of unknown function compare
PP_3065 -0.8 -3.3 Pyocin R2_PP, tail formation compare
PP_2229 -0.8 -2.0 putative K(+)/H(+) antiporter subunit C compare
PP_2087 -0.8 -1.3 CmpX protein compare
PP_3648 -0.8 -2.3 Carboxymuconolactone decarboxylase family protein compare
PP_4696 -0.8 -1.9 Nitrogen regulation protein NR(I) compare
PP_0505 -0.8 -3.4 conserved protein of unknown function compare
PP_t12 -0.8 -0.8 tRNA-Thr compare
PP_4069 -0.8 -1.4 conserved protein of unknown function compare
PP_5748 -0.8 -1.0 cytochrome c heme lyase subunit compare
PP_1468 -0.8 -2.0 Tyrosine recombinase XerD compare
PP_1898 -0.8 -1.6 MotA/TolQ/ExbB proton channel family protein compare
PP_2835 -0.8 -1.8 putative oxidoreductase compare
PP_1568 -0.8 -1.0 conserved protein of unknown function compare
PP_4793 -0.8 -1.3 conserved protein of unknown function compare
PP_1454 -0.7 -2.0 conserved protein of unknown function compare
PP_4121 -0.7 -2.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0565 -0.7 -2.8 putative enzyme compare
PP_2203 -0.7 -1.3 conserved protein of unknown function compare
PP_4961 -0.7 -1.5 putative Lipoprotein compare
PP_4848 -0.7 -1.8 Curved DNA-binding protein compare
PP_1068 -0.7 -1.7 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_2677 -0.7 -2.5 conserved exported protein of unknown function compare
PP_0999 -0.7 -2.2 carbamate kinase compare
PP_5541 -0.7 -3.0 conserved protein of unknown function compare
PP_1428 -0.7 -1.0 Sigma factor AlgU negative regulatory protein compare
PP_1076 -0.7 -2.6 aquaglyceroporin compare
PP_1683 -0.7 -1.2 Transcriptional regulator, MarR family compare
PP_5422 -0.7 -2.5 hypothetical protein compare
PP_2121 -0.7 -1.6 putative Lipoprotein compare
PP_3880 -0.7 -0.9 conserved exported protein of unknown function compare
PP_4966 -0.7 -1.4 transcriptional regulator of methionine metabolism compare
PP_1193 -0.7 -2.7 conserved membrane protein of unknown function compare
PP_2882 -0.7 -2.3 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_3904 -0.7 -1.7 conserved protein of unknown function compare
PP_3714 -0.7 -2.7 Muconolactone Delta-isomerase compare
PP_2581 -0.7 -1.0 conserved protein of unknown function compare
PP_1729 -0.7 -1.5 conserved protein of unknown function compare
PP_0775 -0.7 -1.3 conserved protein of unknown function compare
PP_1054 -0.7 -1.6 Type II secretion pathway protein XcpZ compare
PP_2129 -0.7 -2.6 conserved protein of unknown function compare
PP_1635 -0.7 -2.1 DNA-binding response regulator compare
PP_3058 -0.7 -1.5 conserved protein of unknown function compare
PP_0872 -0.7 -2.7 Peptide chain release factor 3 compare
PP_5661 -0.7 -1.6 putative lipoprotein compare
PP_0754 -0.7 -1.8 conserved protein of unknown function compare
PP_2999 -0.7 -0.9 Glyoxalase family protein compare
PP_4860 -0.7 -4.1 putative Mannose-6-phosphate isomerase conserved
PP_2820 -0.7 -1.3 HTH-type transcriptional regulator nfxB compare
PP_2403 -0.6 -1.0 Chemotaxis protein CheY compare
PP_3474 -0.6 -2.7 putative Curli fiber protein CsgE compare
PP_3480 -0.6 -2.2 conserved protein of unknown function compare
PP_1322 -0.6 -0.4 putative Lipoprotein compare
PP_0206 -0.6 -2.5 Ferredoxin, 4Fe-4S compare
PP_0122 -0.6 -2.1 conserved exported protein of unknown function compare
PP_3978 -0.6 -1.8 conserved protein of unknown function compare
PP_5109 -0.6 -2.7 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_1185 -0.6 -2.9 Outer membrane protein H1 compare
PP_1738 -0.6 -3.1 conserved exported protein of unknown function conserved
PP_3002 -0.6 -0.8 shikimate dehydrogenase-related enzyme compare
PP_4874 -0.6 -0.9 50S ribosomal protein L9 compare
PP_0361 -0.6 -2.7 putative Competence protein ComF compare
PP_2327 -0.6 -1.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0887 -0.6 -2.7 Sensor histidine kinase compare
PP_4503 -0.6 -1.1 DNA-binding response regulator compare
PP_4264 -0.6 -2.8 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_0153 -0.6 -1.3 hypothetical protein compare
PP_4379 -0.6 -1.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_5491 -0.6 -2.1 conserved protein of unknown function with SEC-C motif domain compare
PP_2070 -0.6 -1.2 Transcriptional regulator, AraC family compare
PP_2724 -0.6 -1.8 conserved protein of unknown function compare
PP_3192 -0.6 -1.6 conserved protein of unknown function compare
PP_0235 -0.6 -1.8 Peroxidase compare
PP_4923 -0.6 -3.0 Outer membrane efflux protein compare
PP_2054 -0.6 -1.3 putative DNA-binding transcriptional regulator compare
PP_3762 -0.6 -1.5 Response regulator compare
PP_3339 -0.6 -1.1 conserved exported protein of unknown function compare
PP_1657 -0.6 -1.7 modified nucleoside triphosphate pyrophosphohydrolase compare
PP_4989 -0.6 -1.5 Protein PilJ compare
PP_3770 -0.6 -1.7 conserved protein of unknown function compare
PP_4829 -0.6 -1.9 putative precorrin-3B synthase compare
PP_0735 -0.6 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_1871 -0.6 -2.6 Protease HtpX compare
PP_2878 -0.6 -1.0 conserved protein of unknown function compare
PP_4868 -0.6 -2.1 Nicotinate phosphoribosyltransferase compare
PP_4941 -0.6 -1.9 conserved exported protein of unknown function compare
PP_1385 -0.6 -4.0 Probable efflux pump membrane transporter TtgB compare
PP_2454 -0.6 -1.6 ribose ABC transporter, periplasmic ribose-binding subunit compare
PP_4514 -0.6 -3.8 putative esterase of the alpha-beta hydrolase superfamily conserved
PP_4150 -0.6 -2.0 microcin C transporter - ATP binding subunit compare
PP_1561 -0.6 -2.0 putative Phage holin compare
PP_4129 -0.6 -1.8 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4449 -0.6 -2.3 conserved protein of unknown function compare
PP_1737 -0.6 -3.4 conserved protein of unknown function conserved
PP_3505 -0.6 -1.4 conserved protein of unknown function compare
PP_5329 -0.6 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms