Experiment set38IT045 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +2.5 22.5 Sensor protein GacS compare
PP_4099 +2.3 20.6 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1109 +2.1 17.4 Transcriptional regulator, GntR family compare
PP_0406 +2.1 6.9 Nucleotidyltransferase family protein compare
PP_0138 +1.9 15.5 conserved membrane protein of unknown function compare
PP_1110 +1.7 4.9 serine acetyltransferase compare
PP_5145 +1.7 14.9 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5267 +1.7 4.3 putative cytochrome c5 compare
PP_2330 +1.7 6.9 conserved protein of unknown function compare
PP_1111 +1.6 6.7 putative Synthetase compare
PP_1355 +1.5 10.1 Muropeptide permease AmpG compare
PP_0434 +1.5 7.2 Anhydro-N-acetylmuramic acid kinase compare
PP_2145 +1.4 5.7 beta-N-acetylglucosaminidase compare
PP_0547 +1.4 7.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0948 +1.4 3.0 Phosphocarrier protein HPr compare
PP_0789 +1.3 4.9 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_0959 +1.3 2.7 phospholipid ABC transporter compare
PP_2331 +1.3 7.2 conserved membrane protein of unknown function compare
PP_5582 +1.3 2.5 conserved protein of unknown function compare
PP_0405 +1.2 8.4 conserved protein of unknown function compare
PP_0435 +1.2 6.9 Peptidase, M23/M37 family compare
PP_0340 +1.2 9.0 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0184 +1.1 6.9 Argininosuccinate lyase compare
PP_1824 +1.1 1.9 Smr domain protein compare
PP_1655 +1.1 5.2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3883 +1.1 2.2 putative Phage holin compare
PP_1112 +1.0 5.9 conserved membrane protein of unknown function compare
PP_1088 +1.0 7.5 Argininosuccinate synthase compare
PP_5017 +1.0 1.7 Sec-independent protein translocase protein TatB compare
PP_2046 +1.0 4.4 Transcriptional regulator, LysR family compare
PP_3971 +1.0 2.0 conserved protein of unknown function compare
PP_4367 +1.0 3.7 Flagellar assembly protein FliH compare
PP_2826 +1.0 4.1 Transcriptional regulator MexT compare
PP_2098 +0.9 6.6 D-alanyl-D-alanine carboxypeptidase compare
PP_2168 +0.9 5.8 Transaldolase compare
PP_4910 +0.9 2.3 conserved protein of unknown function compare
PP_4353 +0.9 4.2 Flagellar biosynthetic protein fliR compare
PP_5423 +0.9 3.4 conserved membrane protein of unknown function compare
PP_4355 +0.9 2.6 flagellar export apparatus subunit compare
PP_1719 +0.9 6.8 Tail-specific protease prc compare
PP_4386 +0.9 4.4 flagellar basal-body rod protein FlgF compare
PP_5055 +0.9 3.6 Sulfurtransferase compare
PP_4388 +0.9 6.6 Flagellar hook protein FlgE compare
PP_3726 +0.9 1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_3810 +0.9 2.8 conserved protein of unknown function compare
PP_4171 +0.9 7.6 conserved exported protein of unknown function compare
PP_3052 +0.9 1.3 conserved protein of unknown function compare
PP_4701 +0.9 1.3 glucose-6-phosphate isomerase compare
PP_5058 +0.8 4.2 Carboxy-terminal-processing protease compare
PP_5289 +0.8 4.6 Acetylglutamate kinase compare
PP_4354 +0.8 1.5 flagellar export apparatus subunit compare
PP_3239 +0.8 1.7 putative cointegrate resolution protein T Tn4652 compare
PP_0429 +0.8 5.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4394 +0.8 4.7 flagella basal body P-ring formation protein compare
PP_0377 +0.8 2.0 coenzyme PQQ synthesis protein D compare
PP_4396 +0.8 2.5 conserved protein of unknown function compare
PP_4369 +0.8 4.9 Flagellar M-ring protein compare
PP_4680 +0.8 5.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0058 +0.8 6.0 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4401 +0.8 4.3 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_5106 +0.8 3.8 conserved inner membrane protein compare
PP_4359 +0.8 5.0 Flagellar protein FliL compare
PP_3938 +0.8 0.9 conserved protein of unknown function compare
PP_4263 +0.8 2.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5505 +0.8 1.4 conserved transmembrane protein of unknown function compare
PP_4136 +0.8 1.3 Transcriptional regulator, LuxR family compare
PP_4344 +0.8 4.9 flagellar export pore protein compare
PP_3037 +0.8 2.2 C4-type zinc finger protein, DksA/TraR family compare
PP_1381 +0.8 1.3 4-carboxymuconolactone decarboxylase compare
PP_4779 +0.7 6.2 AMP nucleosidase compare
PP_0191 +0.7 2.3 Transcriptional regulatory protein AlgQ compare
PP_1328 +0.7 2.6 Protein MraZ compare
PP_0274 +0.7 1.7 putative transcriptional regulator containing HTH domain compare
PP_1623 +0.7 6.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_3434 +0.7 1.8 conserved protein of unknown function compare
PP_4260 +0.7 2.4 conserved protein of unknown function compare
PP_4803 +0.7 4.7 D-alanyl-D-alanine carboxypeptidase compare
PP_4797 +0.7 2.1 conserved protein of unknown function compare
PP_2756 +0.7 1.4 conserved protein of unknown function compare
PP_4402 +0.7 4.7 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_4909 +0.7 3.8 phosphoserine phosphatase compare
PP_5066 +0.7 3.0 K(+)/H(+) antiporter NhaP2 compare
PP_1058 +0.7 6.2 conserved protein of unknown function compare
PP_0356 +0.7 4.2 malate synthase G compare
PP_4126 +0.7 1.3 NADH-quinone oxidoreductase subunit I compare
PP_4361 +0.7 4.4 Flagellar hook-length control protein FliK compare
PP_4124 +0.7 2.2 NADH-quinone oxidoreductase subunit G compare
PP_4424 +0.7 1.4 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4365 +0.7 3.5 Flagellar protein FliJ compare
PP_4373 +0.7 4.4 Transcriptional regulator FleQ compare
PP_4382 +0.7 4.8 Peptidoglycan hydrolase FlgJ compare
PP_4390 +0.7 4.5 flagellar basal-body rod protein FlgC compare
PP_5054 +0.7 1.4 glutaredoxin 3 compare
PP_5583 +0.7 1.8 conserved protein of unknown function compare
PP_0261 +0.7 2.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2764 +0.7 1.4 FMN reductase (NADPH) compare
PP_0852 +0.7 3.4 Transcriptional regulator, Cro/CI family compare
PP_1820 +0.7 2.5 Benzoate transport protein compare
PP_2163 +0.7 3.2 VacJ lipoprotein compare
PP_0398 +0.7 3.3 Thiosulfate sulfurtransferase GlpE compare
PP_2766 +0.7 2.6 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_0695 +0.7 3.2 conserved protein of unknown function compare
PP_5217 +0.7 4.8 Polyphosphate kinase compare
PP_0422 +0.7 3.0 Indole-3-glycerol phosphate synthase compare
PP_4197 +0.6 4.5 Transcriptional regulator, GntR family compare
PP_4389 +0.6 4.0 Flagellar basal-body rod modification protein FlgD compare
PP_4050 +0.6 5.1 glycogen synthase compare
PP_2970 +0.6 1.7 conserved exported protein of unknown function compare
PP_4403 +0.6 3.4 Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex compare
PP_0880 +0.6 2.2 dipeptide ABC transporter - putative membrane subunit compare
PP_4358 +0.6 3.2 flagellar synthesis, switching and energizing component compare
PP_2740 +0.6 1.4 Transcriptional regulator, MerR family compare
PP_0025 +0.6 1.0 hypothetical protein compare
PP_4381 +0.6 4.6 Flagellar hook-associated protein FlgK compare
PP_4391 +0.6 3.0 flagellar basal-body rod protein FlgB compare
PP_0244 +0.6 2.3 conserved protein of unknown function compare
PP_4378 +0.6 5.2 flagellin, filament structural protein compare
PP_1656 +0.6 2.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4384 +0.6 4.4 Flagellar L-ring protein compare
PP_4341 +0.6 2.9 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4899 +0.6 3.3 ADP-dependent (S)-NAD(P)H-hydrate dehydratase compare
PP_4905 +0.6 2.9 Flagellar motor rotation protein compare
PP_2848 +0.6 2.8 urease accessory protein compare
PP_2533 +0.6 1.8 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_4385 +0.6 2.7 flagellar basal-body rod protein FlgG compare
PP_4515 +0.6 3.6 Transcriptional regulator, MarR family compare
PP_1999 +0.6 1.3 membrane protein required for colicin V production compare
PP_4223 +0.6 1.8 diaminobutyrate-2-oxoglutarate transaminase compare
PP_0962 +0.6 1.5 toluene-tolerance protein compare
PP_4366 +0.6 4.2 flagellum-specific ATP synthase compare
PP_3407 +0.6 2.8 conserved protein of unknown function compare
PP_4244 +0.6 3.8 alternative sigma factor compare
PP_5146 +0.6 2.8 RNA pyrophosphohydrolase compare
PP_0151 +0.6 2.1 conserved exported protein of unknown function compare
PP_4337 +0.6 3.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_0087 +0.6 1.3 conserved exported protein of unknown function compare
PP_2332 +0.6 1.9 conserved exported protein of unknown function compare
PP_4352 +0.6 3.9 flagellin export apparatus, substrate specificity protein compare
PP_0378 +0.6 3.4 Pyrroloquinoline-quinone synthase compare
PP_4604 +0.6 3.5 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4904 +0.6 2.9 Flagellar motor rotation protein compare
PP_4178 +0.6 1.9 Dienelactone hydrolase family protein compare
PP_5204 +0.6 2.3 conserved protein of unknown function compare
PP_3164 +0.6 1.5 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_4837 +0.6 1.4 conserved protein of unknown function compare
PP_4734 +0.6 2.7 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_0961 +0.6 2.9 toluene tolerance protein compare
PP_2773 +0.6 0.5 conserved protein of unknown function compare
PP_0574 +0.6 4.5 DNA-binding response regulator, LuxR family compare
PP_3438 +0.6 2.7 conserved membrane protein of unknown function compare
PP_4828 +0.6 1.1 Precorrin-8X methylmutase compare
PP_5735 +0.6 1.7 conserved hypothetical protein compare
PP_1352 +0.6 2.3 UPF0234 protein PP_1352 compare
PP_0283 +0.5 1.7 Arginine/ornithine transport ATP-binding protein AotP compare
PP_2845 +0.5 2.3 urease subunit alpha compare
PP_2029 +0.5 1.1 von Willebrand factor type A domain protein compare
PP_2378 +0.5 1.0 Fe/S biogenesis protein NfuA compare
PP_5140 +0.5 2.1 Transcriptional regulator, MerR family compare
PP_2582 +0.5 2.4 putative Heme oxygenase compare
PP_1938 +0.5 1.2 conserved protein of unknown function compare
PP_0674 +0.5 3.6 ADP/ATP ratio sensor and inhibitor of translation compare
PP_3837 +0.5 1.6 inner membrane protein of unknown function compare
PP_1669 +0.5 3.2 NLP/P60 family protein compare
PP_1808 +0.5 1.5 glucose-6-phosphate isomerase compare
PP_1788 +0.5 2.4 conserved protein of unknown function compare
PP_2106 +0.5 2.4 putative Ammonium transporter compare
PP_4370 +0.5 1.2 Flagellar hook-basal body complex protein FliE compare
PP_0755 +0.5 2.3 conserved protein of unknown function compare
PP_4173 +0.5 3.2 Sensor histidine kinase/response regulator compare
PP_0958 +0.5 2.0 phospholipid ABC transporter ATP-binding subunit compare
PP_4678 +0.5 3.7 Ketol-acid reductoisomerase compare
PP_3205 +0.5 2.3 Fumarylacetoacetate hydrolase family protein compare
PP_0150 +0.5 0.9 conserved exported protein of unknown function compare
PP_3916 +0.5 1.6 conserved protein of unknown function compare
PP_2231 +0.5 1.5 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_1546 +0.5 1.6 conserved protein of unknown function compare
PP_0421 +0.5 2.9 Anthranilate phosphoribosyltransferase compare
PP_2864 +0.5 1.6 conserved protein of unknown function compare
PP_2078 +0.5 1.4 transcriptional activator protein LysR compare
PP_4151 +0.5 1.6 Excisionase domain protein compare
PP_2144 +0.5 2.3 Transcriptional regulator, TetR family compare
PP_5185 +0.5 2.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4098 +0.5 0.8 UvrABC system protein C compare
PP_5698 +0.5 1.8 conserved exported protein of unknown function compare
PP_2130 +0.5 3.3 putative Soluble lytic transglycosylase compare
PP_2074 +0.5 3.0 Transcriptional regulator, LysR family compare
PP_5595 +0.5 2.6 conserved exported protein of unknown function compare
PP_5520 +0.5 1.6 conserved protein of unknown function compare
PP_3860 +0.5 2.8 Phage FluMu protein gp47 compare
PP_2307 +0.5 1.0 conserved protein of unknown function compare
PP_4710 +0.5 2.9 tRNA pseudouridine 55 synthase compare
PP_5232 +0.5 1.4 conserved protein of unknown function compare
PP_4356 +0.5 1.7 Flagellar protein FliO compare
PP_0232 +0.5 0.8 ATP-binding taurine transporter subunit compare
PP_1256 +0.5 1.6 putative alpha-ketoglutarate semialdehyde dehydrogenase compare
PP_4847 +0.5 2.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_4172 +0.5 2.9 conserved exported protein of unknown function compare
PP_2061 +0.5 1.2 conserved protein of unknown function compare
PP_3027 +0.5 1.5 conserved protein of unknown function compare
PP_5528 +0.5 0.7 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms