Experiment set38IT044 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_4265 -5.6 -3.8 DNA-binding transcriptional dual regulator compare
PP_5095 -5.4 -3.1 pyrroline-5-carboxylate reductase compare
PP_4799 -5.2 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4700 -4.2 -4.1 pantothenate synthetase compare
PP_0856 -4.2 -7.0 conserved lipoprotein of unknown function compare
PP_4724 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_0691 -4.1 -4.8 Glutamate 5-kinase compare
PP_4999 -3.8 -2.4 dihydroorotase-like protein compare
PP_4693 -3.8 -6.3 RNA polymerase-binding transcription factor DksA compare
PP_4902 -3.7 -3.9 Oligoribonuclease compare
PP_t10 -3.3 -2.7 tRNA-Pro compare
PP_4126 -3.3 -3.0 NADH-quinone oxidoreductase subunit I compare
PP_1664 -3.3 -5.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1654 -3.1 -4.0 cysteine synthase B compare
PP_4937 -3.0 -4.5 toluene tolerance protein compare
PP_4723 -3.0 -5.7 Carbamoyl-phosphate synthase large chain compare
PP_0719 -2.8 -2.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0393 -2.7 -3.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0809 -2.6 -7.6 disulfide bond formation protein B compare
PP_4120 -2.6 -4.7 NADH-quinone oxidoreductase subunit B compare
PP_4804 -2.5 -3.5 RlpA-like lipoprotein compare
PP_0833 -2.4 -2.6 queuine tRNA-ribosyltransferase compare
PP_3318 -2.3 -2.4 conserved protein of unknown function compare
PP_3821 -2.3 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0127 -2.3 -4.8 Thiol:disulfide interchange protein compare
PP_4204 -2.2 -4.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5216 -2.2 -2.8 exopolyphosphatase compare
PP_1898 -2.1 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4546 -2.1 -4.9 ATP-dependent helicase HrpA compare
PP_4124 -2.0 -4.3 NADH-quinone oxidoreductase subunit G compare
PP_0339 -2.0 -2.8 Pyruvate dehydrogenase E1 component compare
PP_0855 -2.0 -2.5 conserved protein of unknown function compare
PP_0346 -1.9 -5.0 putative Heptose kinase WapQ compare
PP_1152 -1.9 -6.1 putative membrane fusion efflux protein compare
PP_4560 -1.9 -4.7 putative Ribonuclease BN compare
PP_1151 -1.8 -4.1 conserved protein of unknown function compare
PP_4122 -1.8 -1.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5093 -1.8 -1.1 twitching motility protein compare
PP_t57 -1.7 -2.3 tRNA-Arg compare
PP_2371 -1.7 -2.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3559 -1.7 -2.6 glycine betaine ABC transporter (permease) compare
PP_1001 -1.7 -3.1 arginine deiminase compare
PP_1055 -1.7 -2.0 Type II secretion pathway protein GspN compare
PP_1215 -1.7 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1778 -1.6 -4.8 Lipopolysaccharide ABC export system, permease protein compare
PP_3519 -1.6 -1.4 putative Lipoprotein compare
PP_0164 -1.6 -3.3 conserved protein of unknown function compare
PP_0959 -1.6 -1.6 phospholipid ABC transporter compare
PP_1186 -1.6 -2.5 two component system DNA-binding transcriptional dual regulator compare
PP_1764 -1.6 -2.6 Phosphoglycolate phosphatase 2 compare
PP_4342 -1.6 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_1994 -1.6 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_2322 -1.6 -4.9 Major outer membrane lipoprotein compare
PP_1150 -1.6 -3.7 putative Membrane protein compare
PP_0509 -1.6 -3.7 conserved protein of unknown function compare
PP_4131 -1.6 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_1198 -1.6 -2.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4943 -1.5 -1.5 putative Glycosyl transferase compare
PP_2000 -1.5 -2.2 amidophosphoribosyl transferase compare
PP_4994 -1.5 -3.3 conserved protein of unknown function compare
PP_1734 -1.5 -3.3 Probable septum site-determining protein MinC compare
PP_4785 -1.4 -3.4 conserved exported protein of unknown function compare
PP_1384 -1.4 -4.2 Probable efflux pump outer membrane protein TtgC compare
PP_3773 -1.4 -1.6 conserved protein of unknown function compare
PP_3551 -1.4 -1.6 DNA-binding response regulator, LuxR family compare
PP_4895 -1.4 -2.5 tRNA dimethylallyltransferase compare
PP_2073 -1.4 -1.7 Acetyltransferase, GNAT family compare
PP_2328 -1.3 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_3999 -1.3 -3.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0801 -1.3 -1.3 conserved exported protein of unknown function compare
PP_4130 -1.3 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5483 -1.3 -1.8 conserved protein of unknown function compare
PP_2681 -1.3 -1.7 coenzyme PQQ synthesis protein D compare
PP_5393 -1.3 -1.1 putative metal-binding chaperone compare
PP_2816 -1.2 -2.1 putative Transcriptional regulator NfxB compare
PP_4988 -1.2 -4.4 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_1568 -1.2 -1.2 conserved protein of unknown function compare
PP_4696 -1.2 -2.8 Nitrogen regulation protein NR(I) compare
PP_4129 -1.2 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4797 -1.2 -1.4 conserved protein of unknown function compare
PP_4098 -1.2 -1.1 UvrABC system protein C compare
PP_4880 -1.2 -5.5 exoribonuclease R compare
PP_2402 -1.2 -1.4 putative Sensor histidine kinase compare
PP_2336 -1.2 -2.3 aconitate hydratase 1 compare
PP_4121 -1.2 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0775 -1.2 -2.1 conserved protein of unknown function compare
PP_4874 -1.2 -0.9 50S ribosomal protein L9 compare
PP_3065 -1.2 -3.7 Pyocin R2_PP, tail formation compare
PP_1513 -1.1 -1.9 Ribosomal RNA small subunit methyltransferase J compare
PP_1385 -1.1 -6.9 Probable efflux pump membrane transporter TtgB compare
PP_1187 -1.1 -5.0 sensor protein compare
PP_2044 -1.1 -1.6 conserved inner membrane protein of unknown function compare
PP_0425 -1.1 -3.0 conserved protein of unknown function compare
PP_3808 -1.1 -1.5 Antibiotic synthesis protein MbtH compare
PP_3378 -1.1 -1.2 putative 2-ketogluconokinase compare
PP_1002 -1.1 -3.3 arginine/ornithine antiporter compare
PP_3064 -1.1 -1.4 Phage tail protein compare
PP_4004 -1.1 -3.5 DNA translocase FtsK compare
PP_5329 -1.1 -2.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1224 -1.1 -4.5 periplasmic subunit of the TolQRA transport system compare
PP_0938 -1.1 -4.8 conserved protein of unknown function compare
PP_5198 -1.1 -1.6 conserved protein of unknown function compare
PP_1623 -1.1 -6.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0119 -1.1 -1.8 putative zinc uptake regulation protein ZUR compare
PP_5084 -1.0 -5.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2640 -1.0 -2.0 Acetyltransferase, GNAT family compare
PP_0063 -1.0 -4.1 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5652 -1.0 -1.7 conserved protein of unknown function, phage origin compare
PP_1508 -1.0 -1.7 conserved protein of unknown function compare
PP_4828 -1.0 -0.9 Precorrin-8X methylmutase compare
PP_2903 -1.0 -1.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_1855 -1.0 -2.5 conserved exported protein of unknown function compare
PP_1553 -1.0 -1.8 conserved protein of unknown function compare
PP_2978 -1.0 -3.5 conserved protein of unknown function compare
PP_0407 -1.0 -4.0 DnaJ-like protein DjlA compare
PP_4726 -1.0 -1.8 Chaperone protein DnaJ compare
PP_2720 -1.0 -1.1 conserved protein of unknown function compare
PP_2054 -1.0 -1.5 putative DNA-binding transcriptional regulator compare
PP_3487 -1.0 -2.3 conserved exported protein of unknown function compare
PP_4966 -1.0 -1.7 transcriptional regulator of methionine metabolism compare
PP_4897 -1.0 -1.8 N-acetylmuramoyl-L-alanine amidase compare
PP_2378 -1.0 -1.8 Fe/S biogenesis protein NfuA compare
PP_2137 -1.0 -1.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_5609 -1.0 -2.4 conserved protein of unknown function compare
PP_4008 -1.0 -3.2 ATP-dependent serine protease compare
PP_1562 -1.0 -1.6 putative Phage terminase, small subunit compare
PP_2320 -1.0 -6.3 conserved exported protein of unknown function compare
PP_0961 -1.0 -4.4 toluene tolerance protein compare
PP_3880 -1.0 -1.0 conserved exported protein of unknown function compare
PP_1779 -0.9 -3.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1217 -0.9 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2337 -0.9 -1.2 aconitate isomerase compare
PP_1938 -0.9 -1.4 conserved protein of unknown function compare
PP_2087 -0.9 -2.7 CmpX protein compare
PP_2585 -0.9 -2.9 Alpha-ketoglutaric semialdehyde dehydrogenase compare
PP_4835 -0.9 -1.3 conserved exported protein of unknown function compare
PP_1999 -0.9 -0.5 membrane protein required for colicin V production compare
PP_1076 -0.9 -3.9 aquaglyceroporin compare
PP_1216 -0.9 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4215 -0.9 -2.7 pyoverdine biosynthesis related protein compare
PP_5229 -0.9 -2.0 conserved protein of unknown function compare
PP_1862 -0.9 -1.9 conserved membrane protein of unknown function compare
PP_0195 -0.9 -1.9 conserved protein of unknown function compare
PP_5310 -0.9 -4.5 junction-specific ATP-dependent DNA helicase compare
PP_0003 -0.9 -2.1 16S RNA methyltransferase compare
PP_2341 -0.9 -1.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4952 -0.9 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1476 -0.9 -2.1 conserved protein of unknown function compare
PP_5571 -0.9 -0.9 conserved protein of unknown function compare
PP_4860 -0.9 -5.2 putative Mannose-6-phosphate isomerase conserved
PP_2884 -0.9 -2.2 XRE family transcriptional regulator compare
PP_4847 -0.9 -2.4 chaperone modulatory of CbpA co-chaperone protein compare
PP_5604 -0.8 -1.3 putative subtilisin-like serine protease compare
PP_4824 -0.8 -2.9 Sensor histidine kinase/response regulator compare
PP_0921 -0.8 -1.4 Transcriptional regulator, ArsR family compare
PP_0949 -0.8 -2.9 putative ATP-binding protein UPF0042 compare
PP_1232 -0.8 -3.9 conserved exported protein of unknown function compare
PP_0794 -0.8 -1.9 1-phosphofructokinase monomer compare
PP_0211 -0.8 -2.0 conserved protein of unknown function compare
PP_1663 -0.8 -3.2 conserved exported protein of unknown function compare
PP_4251 -0.8 -2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_4340 -0.8 -1.5 response regulator for chemotactic signal transduction compare
PP_3002 -0.8 -1.5 shikimate dehydrogenase-related enzyme compare
PP_0345 -0.8 -1.8 putative Heptose kinase WapP compare
PP_0040 -0.8 -1.4 hypothetical protein compare
PP_0313 -0.8 -1.3 putative electron transfer flavoprotein beta subunit compare
PP_2612 -0.8 -2.6 conserved membrane protein of unknown function compare
PP_1892 -0.8 -1.9 conserved protein of unknown function compare
PP_1808 -0.8 -1.5 glucose-6-phosphate isomerase compare
PP_2898 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4848 -0.8 -1.2 Curved DNA-binding protein compare
PP_4532 -0.8 -1.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_2023 -0.8 -1.7 Glutathione S-transferase family protein compare
PP_0888 -0.8 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2433 -0.8 -1.6 conserved protein of unknown function compare
PP_2197 -0.8 -2.3 conserved exported protein of unknown function compare
PP_1020 -0.8 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_4392 -0.8 -3.5 chemotaxis protein methyltransferase compare
PP_5640 -0.8 -1.2 conserved protein of unknown function compare
PP_4531 -0.8 -1.6 conserved exported protein of unknown function compare
PP_4793 -0.8 -1.6 conserved protein of unknown function compare
PP_1185 -0.8 -3.1 Outer membrane protein H1 compare
PP_2878 -0.8 -1.1 conserved protein of unknown function compare
PP_4561 -0.8 -0.7 stress response protein compare
PP_1415 -0.8 -1.9 putative membrane associated enzyme subunit compare
PP_3014 -0.8 -1.9 conserved exported protein of unknown function compare
PP_1392 -0.8 -3.0 putative NAD-binding protein compare
PP_1738 -0.7 -3.4 conserved exported protein of unknown function conserved
PP_1322 -0.7 -1.1 putative Lipoprotein compare
PP_1552 -0.7 -1.9 putative Phage replication protein compare
PP_3643 -0.7 -1.8 putative Oxidoreductase compare
PP_4836 -0.7 -1.5 conserved exported protein of unknown function compare
PP_1353 -0.7 -1.6 conserved membrane protein of unknown function compare
PP_2615 -0.7 -0.8 hemolysin-coregulated protein compare
PP_4273 -0.7 -1.1 Transcriptional regulator, MerR family compare
PP_0566 -0.7 -0.7 translation-related factor compare
PP_0086 -0.7 -1.3 conserved protein of unknown function compare
PP_4227 -0.7 -0.8 conserved protein of unknown function compare
PP_3716 -0.7 -3.1 HTH-type transcriptional regulator compare
PP_4054 -0.7 -1.1 conserved protein of unknown function compare


Specific Phenotypes

For 1 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms