Experiment set38IT043 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.8 -4.0 Glutamate 5-kinase compare
PP_5095 -5.3 -3.3 pyrroline-5-carboxylate reductase compare
PP_4799 -5.1 -3.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -4.9 -8.5 conserved lipoprotein of unknown function compare
PP_4700 -4.5 -3.1 pantothenate synthetase compare
PP_4724 -4.1 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_4693 -4.0 -7.9 RNA polymerase-binding transcription factor DksA compare
PP_1654 -3.9 -2.7 cysteine synthase B compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_4902 -3.2 -4.0 Oligoribonuclease compare
PP_4098 -3.1 -3.3 UvrABC system protein C compare
PP_4265 -3.1 -3.5 DNA-binding transcriptional dual regulator compare
PP_2337 -3.1 -2.9 aconitate isomerase compare
PP_4937 -3.0 -4.2 toluene tolerance protein compare
PP_0393 -2.6 -3.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0809 -2.6 -7.5 disulfide bond formation protein B compare
PP_4874 -2.4 -2.3 50S ribosomal protein L9 compare
PP_0719 -2.3 -2.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1898 -2.2 -2.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4723 -2.2 -6.4 Carbamoyl-phosphate synthase large chain compare
PP_0833 -2.2 -2.9 queuine tRNA-ribosyltransferase compare
PP_5329 -2.2 -4.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2336 -2.1 -4.3 aconitate hydratase 1 compare
PP_5706 -2.1 -1.8 Sec translocation complex - SecG subunit compare
PP_1664 -2.1 -3.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_0127 -2.0 -4.1 Thiol:disulfide interchange protein compare
PP_0346 -2.0 -6.0 putative Heptose kinase WapQ compare
PP_4785 -1.9 -3.3 conserved exported protein of unknown function compare
PP_2000 -1.9 -2.2 amidophosphoribosyl transferase compare
PP_4804 -1.8 -2.5 RlpA-like lipoprotein compare
PP_1734 -1.8 -4.5 Probable septum site-determining protein MinC compare
PP_1198 -1.8 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0630 -1.8 -1.3 DNA gyrase inhibitor YacG compare
PP_1152 -1.8 -5.2 putative membrane fusion efflux protein compare
PP_1293 -1.8 -1.6 molybdopterin synthase small subunit compare
PP_4726 -1.8 -2.8 Chaperone protein DnaJ compare
PP_4130 -1.7 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1186 -1.7 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_1783 -1.7 -3.1 dTDP-glucose pyrophosphorylase compare
PP_4943 -1.7 -1.6 putative Glycosyl transferase compare
PP_4895 -1.7 -2.9 tRNA dimethylallyltransferase compare
PP_4122 -1.7 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4204 -1.7 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2320 -1.6 -8.4 conserved exported protein of unknown function compare
PP_4129 -1.6 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1733 -1.6 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_4004 -1.6 -4.0 DNA translocase FtsK compare
PP_4528 -1.5 -1.8 conserved protein of unknown function compare
PP_3840 -1.5 -1.7 conserved protein of unknown function compare
PP_4994 -1.5 -3.2 conserved protein of unknown function compare
PP_2203 -1.5 -2.9 conserved protein of unknown function compare
PP_1994 -1.5 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_2328 -1.5 -2.8 Phosphoadenosine phosphosulfate reductase compare
PP_1150 -1.5 -4.0 putative Membrane protein compare
PP_3821 -1.4 -4.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1215 -1.4 -2.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_1208 -1.4 -2.3 conserved protein of unknown function, SlyX family compare
PP_2322 -1.4 -4.8 Major outer membrane lipoprotein compare
PP_0001 -1.3 -1.7 probable chromosome-partitioning protein compare
PP_3365 -1.3 -1.3 Acetolactate synthase compare
PP_2152 -1.3 -2.9 glycerophosphoryl diester phosphodiesterase compare
PP_0401 -1.3 -2.9 Ribosomal RNA small subunit methyltransferase A compare
PP_0195 -1.3 -2.5 conserved protein of unknown function compare
PP_0961 -1.3 -4.1 toluene tolerance protein compare
PP_4362 -1.3 -3.9 conserved protein of unknown function compare
PP_5017 -1.3 -1.1 Sec-independent protein translocase protein TatB compare
PP_1217 -1.3 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4131 -1.2 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_t10 -1.2 -1.5 tRNA-Pro compare
PP_0345 -1.2 -2.7 putative Heptose kinase WapP compare
PP_1001 -1.2 -2.8 arginine deiminase compare
PP_4008 -1.2 -3.6 ATP-dependent serine protease compare
PP_2899 -1.2 -1.0 conserved exported protein of unknown function compare
PP_1151 -1.2 -2.3 conserved protein of unknown function compare
PP_5610 -1.2 -1.1 protein of unknown function compare
PP_1002 -1.2 -4.4 arginine/ornithine antiporter compare
PP_1731 -1.2 -2.7 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_4909 -1.2 -3.9 phosphoserine phosphatase compare
PP_5114 -1.2 -3.0 putative adenine methyltransferase compare
PP_0999 -1.2 -2.5 carbamate kinase compare
PP_1384 -1.1 -4.5 Probable efflux pump outer membrane protein TtgC compare
PP_1366 -1.1 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0959 -1.1 -1.1 phospholipid ABC transporter compare
PP_2820 -1.1 -1.3 HTH-type transcriptional regulator nfxB compare
PP_0855 -1.1 -1.1 conserved protein of unknown function compare
PP_2371 -1.1 -2.0 Sulphite reductase hemoprotein, beta subunit compare
PP_2633 -1.1 -1.6 conserved protein of unknown function compare
PP_4010 -1.1 -3.8 DNA replication inhibitor compare
PP_1224 -1.0 -3.4 periplasmic subunit of the TolQRA transport system compare
PP_3999 -1.0 -3.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5084 -1.0 -5.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0962 -1.0 -1.2 toluene-tolerance protein compare
PP_2342 -1.0 -2.7 conserved protein of unknown function compare
PP_4054 -1.0 -1.0 conserved protein of unknown function compare
PP_1187 -1.0 -5.1 sensor protein compare
PP_4482 -1.0 -2.7 Transcriptional regulator, AraC family compare
PP_4880 -1.0 -5.1 exoribonuclease R compare
PP_4342 -1.0 -2.8 flagellar synthesis regulator, putative ATPase compare
PP_2327 -1.0 -2.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0938 -1.0 -4.6 conserved protein of unknown function compare
PP_4215 -1.0 -3.4 pyoverdine biosynthesis related protein compare
PP_2070 -1.0 -1.6 Transcriptional regulator, AraC family compare
PP_0998 -1.0 -3.5 conserved protein of unknown function compare
PP_0852 -1.0 -3.2 Transcriptional regulator, Cro/CI family compare
PP_1779 -0.9 -3.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4964 -0.9 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0184 -0.9 -3.7 Argininosuccinate lyase compare
PP_4253 -0.9 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_0339 -0.9 -2.4 Pyruvate dehydrogenase E1 component compare
PP_2581 -0.9 -1.6 conserved protein of unknown function compare
PP_4124 -0.9 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_4560 -0.9 -2.3 putative Ribonuclease BN compare
PP_0003 -0.9 -2.3 16S RNA methyltransferase compare
PP_5572 -0.9 -1.3 protein of unknown function compare
PP_5583 -0.9 -1.3 conserved protein of unknown function compare
PP_4961 -0.9 -1.3 putative Lipoprotein compare
PP_2442 -0.9 -0.9 conserved protein of unknown function, DUF480 family compare
PP_2414 -0.9 -1.1 conserved exported protein of unknown function compare
PP_0872 -0.9 -2.8 Peptide chain release factor 3 compare
PP_0948 -0.9 -1.0 Phosphocarrier protein HPr compare
PP_2858 -0.9 -1.5 conserved exported protein of unknown function compare
PP_0832 -0.9 -1.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4803 -0.9 -4.2 D-alanyl-D-alanine carboxypeptidase compare
PP_4835 -0.9 -1.8 conserved exported protein of unknown function compare
PP_1778 -0.9 -3.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1812 -0.9 -2.2 conserved protein of unknown function compare
PP_1435 -0.8 -3.2 DNA repair protein RecO compare
PP_1153 -0.8 -2.8 putative lipoprotein compare
PP_4223 -0.8 -1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5083 -0.8 -2.2 putative Type IV pili biogenesis protein PilM compare
PP_1326 -0.8 -2.7 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_1536 -0.8 -1.9 conserved protein of unknown function compare
PP_0910 -0.8 -3.1 conserved exported protein of unknown function compare
PP_4247 -0.8 -0.9 Exonuclease compare
PP_5201 -0.8 -1.5 conserved protein of unknown function, UPF0149 family compare
PP_1986 -0.8 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_0508 -0.8 -1.3 conserved exported protein of unknown function compare
PP_2163 -0.8 -3.0 VacJ lipoprotein compare
PP_1985 -0.8 -1.8 3-isopropylmalate dehydratase large subunit compare
PP_2379 -0.8 -1.9 putative cytochrome oxidase biogenesis protein compare
PP_5422 -0.8 -1.7 hypothetical protein compare
PP_2433 -0.8 -1.1 conserved protein of unknown function compare
PP_5589 -0.8 -2.1 protein of unknown function containing Rhs repeat-associated core domain compare
PP_1238 -0.8 -2.8 putative Lipoprotein compare
PP_5609 -0.8 -1.3 conserved protein of unknown function compare
PP_1729 -0.8 -1.3 conserved protein of unknown function compare
PP_4847 -0.8 -1.9 chaperone modulatory of CbpA co-chaperone protein compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_4121 -0.8 -2.0 NADH-quinone oxidoreductase subunit C/D compare
PP_3874 -0.8 -2.2 conserved protein of unknown function compare
PP_5310 -0.8 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_1000 -0.8 -1.9 ornithine carbamoyltransferase, catabolic compare
PP_4860 -0.8 -4.5 putative Mannose-6-phosphate isomerase conserved
PP_3946 -0.8 -0.7 HTH-type transcriptional repressor NicR compare
PP_1325 -0.8 -3.5 putative lipoprotein compare
PP_4829 -0.8 -2.4 putative precorrin-3B synthase compare
PP_2748 -0.8 -2.2 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_4561 -0.8 -0.8 stress response protein compare
PP_2145 -0.8 -1.2 beta-N-acetylglucosaminidase compare
PP_1428 -0.8 -0.8 Sigma factor AlgU negative regulatory protein compare
PP_0846 -0.8 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_1385 -0.8 -5.3 Probable efflux pump membrane transporter TtgB compare
PP_3688 -0.7 -4.0 conserved protein of unknown function compare
PP_2681 -0.7 -1.3 coenzyme PQQ synthesis protein D compare
PP_0958 -0.7 -2.0 phospholipid ABC transporter ATP-binding subunit compare
PP_5110 -0.7 -0.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2189 -0.7 -1.8 conserved protein of unknown function compare
PP_1935 -0.7 -1.6 Transcriptional regulator, Cro/CI family compare
PP_2672 -0.7 -1.4 Transcriptional activator protein ExaE compare
PP_2422 -0.7 -1.7 conserved protein of unknown function compare
PP_2229 -0.7 -1.4 putative K(+)/H(+) antiporter subunit C compare
PP_4058 -0.7 -4.0 1,4-alpha-glucan branching enzyme compare
PP_2806 -0.7 -2.6 Transcriptional regulator, TetR family compare
PP_2130 -0.7 -3.7 putative Soluble lytic transglycosylase compare
PP_1694 -0.7 -2.3 DNA recombination limiting inversions protein compare
PP_3625 -0.7 -2.1 Transporter, LysE family compare
PP_5317 -0.7 -2.4 Probable chorismate pyruvate-lyase compare
PP_1268 -0.7 -1.3 putative HtrA suppressor protein sohA compare
PP_0908 -0.7 -2.6 conserved exported protein of unknown function compare
PP_5198 -0.7 -2.1 conserved protein of unknown function compare
PP_3989 -0.7 -2.2 DNA-cytosine methyltransferase compare
PP_3037 -0.7 -1.7 C4-type zinc finger protein, DksA/TraR family compare
PP_3539 -0.7 -1.9 putative Transcriptional regulator compare
PP_3036 -0.7 -2.3 conserved protein of unknown function compare
PP_2373 -0.7 -1.8 conserved protein of unknown function compare
PP_1742 -0.7 -1.5 conserved inner membrane protein of unknown function compare
PP_4424 -0.7 -0.9 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_5597 -0.7 -1.2 conserved protein of unknown function compare
PP_5216 -0.7 -1.3 exopolyphosphatase compare
PP_1692 -0.7 -1.5 conserved protein of unknown function compare
PP_4514 -0.7 -4.4 putative esterase of the alpha-beta hydrolase superfamily conserved
PP_3934 -0.7 -3.3 Transcriptional regulator, LysR family compare
PP_1744 -0.7 -2.3 conserved exported protein of unknown function compare
PP_5612 -0.7 -3.3 protein of unknown function compare
PP_0505 -0.7 -2.4 conserved protein of unknown function compare
PP_0909 -0.7 -3.1 conserved exported protein of unknown function compare
PP_5311 -0.7 -3.4 putative signal transduction protein compare
PP_3762 -0.7 -1.7 Response regulator compare
PP_3110 -0.7 -1.1 protein of unknown function compare
PP_4868 -0.7 -2.7 Nicotinate phosphoribosyltransferase compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms