Experiment set38IT043 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 240 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +1.9 18.1 Sensor protein GacS compare
PP_4099 +1.8 15.2 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3938 +1.3 1.8 conserved protein of unknown function compare
PP_5267 +1.2 1.9 putative cytochrome c5 compare
PP_1269 +1.2 2.1 Universal stress protein family compare
PP_0429 +1.1 6.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_1410 +1.1 1.6 conserved protein of unknown function compare
PP_3930 +1.0 4.0 conserved exported protein of unknown function compare
PP_t29 +1.0 2.3 tRNA-Ala compare
PP_5058 +1.0 5.1 Carboxy-terminal-processing protease compare
PP_0276 +1.0 1.9 Transcriptional regulator, Cro/CI family compare
PP_4354 +1.0 2.4 flagellar export apparatus subunit compare
PP_5582 +1.0 1.7 conserved protein of unknown function compare
PP_4353 +1.0 4.8 Flagellar biosynthetic protein fliR compare
PP_3117 +1.0 2.9 putative protein involved in error-prone processing of DNA lesions compare
PP_4369 +0.9 5.2 Flagellar M-ring protein compare
PP_4355 +0.9 2.3 flagellar export apparatus subunit compare
PP_1770 +0.9 1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4199 +0.9 1.3 putative Lipoprotein compare
PP_5000 +0.9 2.1 peptidase component of the ATP-dependent HslVU protease compare
PP_1038 +0.9 2.4 conserved protein of unknown function compare
PP_2280 +0.9 2.1 conserved protein of unknown function compare
PP_4171 +0.9 7.8 conserved exported protein of unknown function compare
PP_0022 +0.9 1.3 hypothetical protein compare
PP_2499 +0.9 1.1 conserved protein of unknown function compare
PP_2668 +0.9 2.4 ABC efflux transporter, ATP-binding protein compare
PP_1834 +0.9 2.0 conserved protein of unknown function compare
PP_3971 +0.9 0.8 conserved protein of unknown function compare
PP_4370 +0.9 4.2 Flagellar hook-basal body complex protein FliE compare
PP_5475 +0.9 1.8 conserved protein of unknown function compare
PP_4396 +0.9 2.1 conserved protein of unknown function compare
PP_3081 +0.8 2.1 conserved protein of unknown function compare
PP_0574 +0.8 6.8 DNA-binding response regulator, LuxR family compare
PP_1307 +0.8 2.8 AsnC family transcriptional regulator compare
PP_0893 +0.8 2.0 ThiJ/PfpI family protein compare
PP_4365 +0.8 3.4 Flagellar protein FliJ compare
PP_2765 +0.8 2.8 putative Sulfonate monooxygenase MsuD compare
PP_0750 +0.8 2.7 conserved protein of unknown function compare
PP_4368 +0.8 3.3 flagellar motor switch protein compare
PP_4388 +0.8 5.6 Flagellar hook protein FlgE compare
PP_4391 +0.8 5.2 flagellar basal-body rod protein FlgB compare
PP_4341 +0.8 5.2 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_5598 +0.8 1.9 conserved protein of unknown function compare
PP_1824 +0.8 1.8 Smr domain protein compare
PP_2883 +0.7 1.4 conserved protein of unknown function compare
PP_1176 +0.7 1.5 conserved protein of unknown function compare
PP_4981 +0.7 2.8 polyisoprene-binding protein, acidic stress response factor compare
PP_2520 +0.7 2.0 conserved protein of unknown function compare
PP_3407 +0.7 2.3 conserved protein of unknown function compare
PP_3488 +0.7 2.6 Sco1/SenC family protein compare
PP_3902 +0.7 2.3 conserved protein of unknown function compare
PP_2031 +0.7 2.1 conserved protein of unknown function compare
PP_4373 +0.7 5.7 Transcriptional regulator FleQ compare
PP_0656 +0.7 2.8 putative Amino acid ABC transporter, permease protein compare
PP_3198 +0.7 0.9 Ferredoxin, 2Fe-2S compare
PP_1390 +0.7 2.6 conserved exported protein of unknown function compare
PP_1493 +0.7 1.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0725 +0.7 3.6 conserved hypothetical TPR repeat protein compare
PP_4352 +0.7 4.7 flagellin export apparatus, substrate specificity protein compare
PP_5295 +0.7 2.0 conserved protein of unknown function compare
PP_4389 +0.7 3.4 Flagellar basal-body rod modification protein FlgD compare
PP_1138 +0.7 2.0 branched chain amino acid transporter - ATP binding subunit compare
PP_1788 +0.7 2.3 conserved protein of unknown function compare
PP_2196 +0.7 2.1 agmatinase compare
PP_0547 +0.7 2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5022 +0.7 2.0 Glutamine transport ATP-binding protein GlnQ compare
PP_4939 +0.7 3.0 conserved protein of unknown function compare
PP_3551 +0.7 1.7 DNA-binding response regulator, LuxR family compare
PP_2750 +0.7 1.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_5423 +0.7 1.3 conserved membrane protein of unknown function compare
PP_4904 +0.7 4.0 Flagellar motor rotation protein compare
PP_5359 +0.7 1.2 CobW/P47K family protein compare
PP_4366 +0.7 4.5 flagellum-specific ATP synthase compare
PP_4361 +0.7 4.1 Flagellar hook-length control protein FliK compare
PP_5054 +0.7 1.1 glutaredoxin 3 compare
PP_1122 +0.7 0.7 OmpA family protein compare
PP_4382 +0.6 3.6 Peptidoglycan hydrolase FlgJ compare
PP_0035 +0.6 1.5 putative bactoprenol-linked glycose transferase compare
PP_1054 +0.6 1.4 Type II secretion pathway protein XcpZ compare
PP_3258 +0.6 1.0 conserved protein of unknown function compare
PP_3447 +0.6 1.0 conserved membrane protein of unknown function compare
PP_3204 +0.6 1.6 conserved protein of unknown function compare
PP_3243 +0.6 1.8 Acetyltransferase, GNAT family compare
PP_2459 +0.6 1.5 ribose pyranase compare
PP_2889 +0.6 2.2 putative Transmembrane regulator PrtR compare
PP_5156 +0.6 2.5 conserved exported protein of unknown function compare
PP_2511 +0.6 1.7 conserved protein of unknown function compare
PP_2815 +0.6 2.2 conserved protein of unknown function compare
PP_4359 +0.6 3.5 Flagellar protein FliL compare
PP_0643 +0.6 2.1 protein of unknown function compare
PP_0880 +0.6 2.5 dipeptide ABC transporter - putative membrane subunit compare
PP_0150 +0.6 2.0 conserved exported protein of unknown function compare
PP_1070 +0.6 2.2 glutamate / aspartate ABC transporter - permease subunit compare
PP_4344 +0.6 3.8 flagellar export pore protein compare
PP_1048 +0.6 1.0 putative protein secretion protein for export compare
PP_3823 +0.6 1.9 Cytochrome c-type protein compare
PP_3392 +0.6 1.1 conserved protein of unknown function compare
PP_2025 +0.6 1.5 Exonuclease SbcD compare
PP_3829 +0.6 2.7 Molybdenum transport system permease protein ModB compare
PP_3757 +0.6 1.4 Chemotaxis protein CheY compare
PP_2243 +0.6 1.8 conserved protein of unknown function compare
PP_1008 +0.6 1.7 RNA polymerase subunit sigma-24 compare
PP_3469 +0.6 2.1 conserved protein of unknown function compare
PP_5274 +0.6 1.5 conserved protein of unknown function compare
PP_5315 +0.6 2.6 Rubredoxin-1 compare
PP_4230 +0.6 2.4 conserved exported protein of unknown function compare
PP_2136 +0.6 1.8 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2197 +0.6 1.9 conserved exported protein of unknown function compare
PP_2894 +0.6 2.0 conserved protein of unknown function compare
PP_3908 +0.6 1.1 conserved protein of unknown function compare
PP_4384 +0.5 3.6 Flagellar L-ring protein compare
PP_2318 +0.5 1.9 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_0143 +0.5 3.0 conserved membrane protein of unknown function compare
PP_0398 +0.5 2.7 Thiosulfate sulfurtransferase GlpE compare
PP_5437 +0.5 2.2 protein of unknown function compare
PP_0757 +0.5 2.5 conserved protein of unknown function compare
PP_4645 +0.5 2.0 Large-conductance mechanosensitive channel compare
PP_4065 +0.5 2.5 methylcrotonyl-CoA carboxylase biotin-containing subunit beta compare
PP_3041 +0.5 1.7 conserved protein of unknown function compare
PP_4268 +0.5 1.1 nucleoid-associated broad specificity regulator compare
PP_0918 +0.5 3.6 putative 3-beta hydroxysteroid dehydrogenase/isomerase family protein compare
PP_3926 +0.5 0.7 short-chain dehydrogenase compare
PP_1300 +0.5 2.3 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0232 +0.5 0.9 ATP-binding taurine transporter subunit compare
PP_5714 +0.5 2.0 conserved protein of unknown function compare
PP_2340 +0.5 2.0 conserved protein of unknown function compare
PP_3398 +0.5 1.4 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2615 +0.5 1.2 hemolysin-coregulated protein compare
PP_5485 +0.5 1.6 putative N-acetyltransferase, GNAT domain compare
PP_4381 +0.5 3.9 Flagellar hook-associated protein FlgK compare
PP_3295 +0.5 1.9 YeeE/YedE family protein compare
PP_2514 +0.5 2.1 4-carboxy-4-hydroxy-2-oxoadipic acid aldolase compare
PP_5070 +0.5 3.1 ParA family protein compare
PP_3671 +0.5 2.3 Oxidoreductase, aldo/keto reductase family compare
PP_1632 +0.5 1.2 conserved protein of unknown function compare
PP_2642 +0.5 3.1 Transcriptional regulator, GntR family compare
PP_1836 +0.5 1.3 putative metal transporter, ZIP family compare
PP_1328 +0.5 0.9 Protein MraZ compare
PP_5698 +0.5 2.1 conserved exported protein of unknown function compare
PP_5338 +0.5 1.4 aspartate ammonia-lyase compare
PP_5547 +0.5 1.9 protein of unknown function compare
PP_4378 +0.5 3.9 flagellin, filament structural protein compare
PP_1571 +0.5 1.1 conserved protein of unknown function compare
PP_0025 +0.5 0.7 hypothetical protein compare
PP_0355 +0.5 1.9 Response regulator compare
PP_5705 +0.5 1.4 protein of unknown function compare
PP_0220 +0.5 1.8 methionine import ATP-binding protein metN2 compare
PP_4734 +0.5 3.1 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4358 +0.5 2.2 flagellar synthesis, switching and energizing component compare
PP_2990 +0.5 1.8 Transcriptional regulator, MerR family compare
PP_1669 +0.5 2.5 NLP/P60 family protein compare
PP_4891 +0.5 1.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3312 +0.5 1.0 putative Heat shock protein compare
PP_5590 +0.5 3.1 conserved exported protein of unknown function compare
PP_5107 +0.5 1.5 Monofunctional biosynthetic peptidoglycan transglycosylase compare
PP_1550 +0.5 1.2 Transcriptional regulator, Cro/CI family compare
PP_2539 +0.5 1.5 Transcriptional regulator, LysR family compare
PP_3191 +0.5 1.4 putative threonine ammonia-lyase / dehydratase compare
PP_4383 +0.5 2.5 Flagellar P-ring protein compare
PP_4156 +0.5 1.2 Transcriptional regulator, LysR family compare
PP_2622 +0.5 0.9 conserved protein of unknown function compare
PP_2999 +0.5 0.9 Glyoxalase family protein compare
PP_3434 +0.5 1.0 conserved protein of unknown function compare
PP_5604 +0.5 0.6 putative subtilisin-like serine protease compare
PP_4172 +0.5 2.4 conserved exported protein of unknown function compare
PP_2330 +0.5 1.3 conserved protein of unknown function compare
PP_2462 +0.5 1.4 conserved protein of unknown function compare
PP_4380 +0.5 3.5 Flagellar hook-associated protein FlgL compare
PP_1233 +0.5 1.5 sulfurtransferase compare
PP_1929 +0.5 2.9 arsenite/antimonite transporter compare
PP_3768 +0.5 2.0 putative shikimate 5-dehydrogenase compare
PP_4173 +0.5 2.8 Sensor histidine kinase/response regulator compare
PP_3738 +0.5 1.1 putative Transcriptional regulator VanR compare
PP_4390 +0.5 2.7 flagellar basal-body rod protein FlgC compare
PP_1723 +0.5 2.5 putative 2-aminoethylphosphonate transport system permease compare
PP_3043 +0.5 1.5 conserved protein of unknown function compare
PP_5712 +0.5 1.5 conserved protein of unknown function compare
PP_5023 +0.5 2.5 Amino acid ABC transporter, permease protein compare
PP_4385 +0.5 1.7 flagellar basal-body rod protein FlgG compare
PP_2946 +0.5 1.7 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_2231 +0.5 1.8 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4871 +0.5 1.5 putative lysine decarboxylase family protein compare
PP_5003 +0.5 3.2 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_5748 +0.5 0.5 cytochrome c heme lyase subunit compare
PP_3096 +0.4 2.5 conserved protein of unknown function compare
PP_0839 +0.4 0.9 tRNA Cm32/Um32 methyltransferase compare
PP_0122 +0.4 1.5 conserved exported protein of unknown function compare
PP_1109 +0.4 3.4 Transcriptional regulator, GntR family compare
PP_0580 +0.4 2.0 MaoC domain protein compare
PP_1528 +0.4 0.6 conserved protein of unknown function compare
PP_5516 +0.4 2.1 protein of unknown function compare
PP_0368 +0.4 3.1 putative Acyl-CoA dehydrogenase compare
PP_4386 +0.4 2.2 flagellar basal-body rod protein FlgF compare
PP_4356 +0.4 1.6 Flagellar protein FliO compare
PP_5594 +0.4 1.0 conserved protein of unknown function compare
PP_3456 +0.4 2.8 Multidrug resistance protein MexB compare
PP_1874 +0.4 1.9 Hydroperoxy fatty acid reductase gpx1 compare
PP_5324 +0.4 0.9 Response regulator compare
PP_2404 +0.4 1.7 conserved exported protein of unknown function compare
PP_5448 +0.4 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusaric acid in Pseudomonas putida KT2440

For stress Fusaric acid across organisms