Experiment set38IT040 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.9 -4.1 Glutamate 5-kinase compare
PP_4265 -5.0 -4.9 DNA-binding transcriptional dual regulator compare
PP_0856 -4.7 -8.5 conserved lipoprotein of unknown function compare
PP_4799 -4.5 -5.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1654 -4.0 -2.8 cysteine synthase B compare
PP_5095 -3.8 -3.3 pyrroline-5-carboxylate reductase compare
PP_4999 -3.7 -2.5 dihydroorotase-like protein compare
PP_4693 -3.6 -8.3 RNA polymerase-binding transcription factor DksA compare
PP_4804 -3.2 -4.6 RlpA-like lipoprotein compare
PP_4723 -3.1 -3.7 Carbamoyl-phosphate synthase large chain compare
PP_4700 -3.1 -5.5 pantothenate synthetase compare
PP_1898 -2.9 -4.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4724 -2.7 -4.3 Carbamoyl-phosphate synthase small chain compare
PP_4895 -2.6 -5.6 tRNA dimethylallyltransferase compare
PP_4943 -2.5 -3.7 putative Glycosyl transferase compare
PP_1783 -2.5 -4.0 dTDP-glucose pyrophosphorylase compare
PP_0846 -2.4 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_4008 -2.3 -6.2 ATP-dependent serine protease compare
PP_2336 -2.2 -5.6 aconitate hydratase 1 compare
PP_3946 -2.1 -1.4 HTH-type transcriptional repressor NicR compare
PP_1733 -2.1 -5.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4098 -2.1 -3.5 UvrABC system protein C compare
PP_2402 -2.1 -2.3 putative Sensor histidine kinase compare
PP_4004 -2.0 -6.0 DNA translocase FtsK compare
PP_2337 -2.0 -3.5 aconitate isomerase compare
PP_1734 -2.0 -6.0 Probable septum site-determining protein MinC compare
PP_1568 -1.9 -2.0 conserved protein of unknown function compare
PP_4902 -1.9 -3.0 Oligoribonuclease compare
PP_4560 -1.8 -5.0 putative Ribonuclease BN compare
PP_2000 -1.8 -2.4 amidophosphoribosyl transferase compare
PP_4994 -1.8 -4.4 conserved protein of unknown function compare
PP_0719 -1.7 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2088 -1.7 -4.3 RNA polymerase sigma factor SigX compare
PP_2302 -1.7 -4.8 DNA-binding, ATP-dependent protease compare
PP_1217 -1.6 -5.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4593 -1.6 -2.0 conserved protein of unknown function compare
PP_5327 -1.6 -3.9 putative phosphate ABC transporter, permease subunit compare
PP_2378 -1.6 -2.4 Fe/S biogenesis protein NfuA compare
PP_4120 -1.5 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_4785 -1.5 -4.6 conserved exported protein of unknown function compare
PP_1987 -1.5 -2.0 Methlytransferase, UbiE/COQ5 family compare
PP_1664 -1.5 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1232 -1.4 -6.9 conserved exported protein of unknown function compare
PP_1208 -1.4 -1.5 conserved protein of unknown function, SlyX family compare
PP_2414 -1.4 -3.0 conserved exported protein of unknown function compare
PP_1187 -1.4 -5.2 sensor protein compare
PP_4937 -1.4 -2.4 toluene tolerance protein compare
PP_0833 -1.4 -2.2 queuine tRNA-ribosyltransferase compare
PP_1353 -1.4 -3.1 conserved membrane protein of unknown function compare
PP_5706 -1.4 -1.5 Sec translocation complex - SecG subunit compare
PP_4204 -1.4 -3.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4940 -1.3 -6.9 Putative glycosyltransferase compare
PP_1215 -1.3 -3.7 Crossover junction endodeoxyribonuclease RuvC compare
PP_4938 -1.3 -7.3 putative Glycosyl transferase compare
PP_0393 -1.3 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2681 -1.3 -1.9 coenzyme PQQ synthesis protein D compare
PP_0809 -1.2 -6.7 disulfide bond formation protein B compare
PP_1366 -1.2 -1.6 Transcriptional regulator MvaT, P16 subunit compare
PP_1002 -1.2 -3.8 arginine/ornithine antiporter compare
PP_2322 -1.2 -5.9 Major outer membrane lipoprotein compare
PP_3409 -1.2 -3.1 putative Cobalamin biosynthesis protein cobE compare
PP_0127 -1.2 -3.8 Thiol:disulfide interchange protein compare
PP_4936 -1.2 -5.5 O-antigen polymerase compare
PP_4406 -1.1 -2.3 conserved protein of unknown function compare
PP_5328 -1.1 -1.4 putative phosphate transport system permease protein compare
PP_1000 -1.1 -3.1 ornithine carbamoyltransferase, catabolic compare
PP_5310 -1.1 -5.2 junction-specific ATP-dependent DNA helicase compare
PP_0888 -1.1 -1.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1553 -1.0 -1.2 conserved protein of unknown function compare
PP_1237 -1.0 -1.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1224 -1.0 -4.8 periplasmic subunit of the TolQRA transport system compare
PP_4342 -1.0 -3.3 flagellar synthesis regulator, putative ATPase compare
PP_4129 -1.0 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0339 -1.0 -2.7 Pyruvate dehydrogenase E1 component compare
PP_t12 -1.0 -1.2 tRNA-Thr compare
PP_3098 -1.0 -1.0 conserved protein of unknown function compare
PP_5471 -1.0 -1.9 putative response regulator receiver protein compare
PP_0949 -1.0 -4.2 putative ATP-binding protein UPF0042 compare
PP_1186 -1.0 -2.2 two component system DNA-binding transcriptional dual regulator compare
PP_2784 -0.9 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5456 -0.9 -1.1 conserved protein of unknown function compare
PP_3821 -0.9 -4.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1001 -0.9 -2.2 arginine deiminase compare
PP_0164 -0.9 -3.8 conserved protein of unknown function compare
PP_1022 -0.9 -4.4 glucose 6-phosphate-1-dehydrogenase compare
PP_2903 -0.9 -1.6 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2379 -0.9 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_2416 -0.9 -1.6 putative Iron ABC transporter, ATP-binding protein compare
PP_4058 -0.9 -5.2 1,4-alpha-glucan branching enzyme compare
PP_4571 -0.9 -3.9 cysteine synthase A compare
PP_2433 -0.9 -1.3 conserved protein of unknown function compare
PP_0801 -0.9 -1.3 conserved exported protein of unknown function compare
PP_5198 -0.9 -2.0 conserved protein of unknown function compare
PP_0401 -0.8 -2.1 Ribosomal RNA small subunit methyltransferase A compare
PP_5748 -0.8 -1.1 cytochrome c heme lyase subunit compare
PP_3192 -0.8 -3.7 conserved protein of unknown function compare
PP_1185 -0.8 -4.3 Outer membrane protein H1 compare
PP_4045 -0.8 -1.9 conserved protein of unknown function compare
PP_4130 -0.8 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0938 -0.8 -4.8 conserved protein of unknown function compare
PP_4504 -0.8 -0.9 conserved exported protein of unknown function compare
PP_0512 -0.8 -2.0 hypothetical protein compare
PP_4707 -0.8 -1.8 OsmY-related protein compare
PP_0855 -0.8 -1.0 conserved protein of unknown function compare
PP_0184 -0.8 -3.1 Argininosuccinate lyase compare
PP_2299 -0.8 -2.6 Trigger factor compare
PP_5217 -0.8 -5.5 Polyphosphate kinase compare
PP_1128 -0.7 -2.6 OmpA family protein compare
PP_1131 -0.7 -3.5 outer membrane lipoprotein compare
PP_4803 -0.7 -3.7 D-alanyl-D-alanine carboxypeptidase compare
PP_2640 -0.7 -1.8 Acetyltransferase, GNAT family compare
PP_4258 -0.7 -1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_2820 -0.7 -1.5 HTH-type transcriptional regulator nfxB compare
PP_0195 -0.7 -1.6 conserved protein of unknown function compare
PP_5230 -0.7 -2.3 Tyrosine recombinase XerC compare
PP_1096 -0.7 -1.5 putative electron transport complex protein compare
PP_1716 -0.7 -2.2 Transcriptional regulator, Cro/CI family compare
PP_5109 -0.7 -4.0 membrane component of the ABC transporter FtsEX involved in cellular division compare
PP_4917 -0.7 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4471 -0.7 -2.5 Magnesium transporter compare
PP_4880 -0.7 -4.2 exoribonuclease R compare
PP_2320 -0.7 -4.2 conserved exported protein of unknown function compare
PP_0832 -0.7 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4156 -0.7 -2.2 Transcriptional regulator, LysR family compare
PP_5329 -0.7 -1.8 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5295 -0.7 -1.1 conserved protein of unknown function compare
PP_1076 -0.7 -2.8 aquaglyceroporin compare
PP_4738 -0.7 -2.4 conserved exported protein of unknown function compare
PP_0852 -0.7 -2.4 Transcriptional regulator, Cro/CI family compare
PP_1216 -0.7 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3408 -0.7 -2.7 cobalt transporter subunit A compare
PP_4964 -0.7 -1.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5000 -0.7 -1.1 peptidase component of the ATP-dependent HslVU protease compare
PP_3227 -0.6 -2.0 Transcriptional regulator, LysR family compare
PP_1834 -0.6 -1.4 conserved protein of unknown function compare
PP_0972 -0.6 -2.6 UPF0213 protein PP_0972 compare
PP_5331 -0.6 -2.6 Long-chain acyl-CoA thioester hydrolase compare
PP_0150 -0.6 -1.5 conserved exported protein of unknown function compare
PP_0276 -0.6 -0.9 Transcriptional regulator, Cro/CI family compare
PP_1352 -0.6 -1.6 UPF0234 protein PP_1352 compare
PP_4952 -0.6 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_3504 -0.6 -3.3 conserved protein of unknown function compare
PP_2712 -0.6 -2.3 conserved exported protein of unknown function compare
PP_3908 -0.6 -2.5 conserved protein of unknown function compare
PP_2328 -0.6 -2.1 Phosphoadenosine phosphosulfate reductase compare
PP_5487 -0.6 -1.5 conserved protein of unknown function compare
PP_1829 -0.6 -1.1 Hydrolase, alpha/beta fold family compare
PP_2932 -0.6 -2.9 Amidase family protein compare
PP_3627 -0.6 -2.7 conserved protein of unknown function compare
PP_4329 -0.6 -1.5 FlhB domain protein compare
PP_0775 -0.6 -1.0 conserved protein of unknown function compare
PP_1778 -0.6 -2.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1994 -0.6 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_3551 -0.6 -1.1 DNA-binding response regulator, LuxR family compare
PP_1730 -0.6 -2.1 Probable M18 family aminopeptidase 2 compare
PP_2899 -0.6 -1.1 conserved exported protein of unknown function compare
PP_3473 -0.6 -1.7 curli secretion and assembly outer membrane associated component compare
PP_0999 -0.6 -1.9 carbamate kinase compare
PP_3824 -0.6 -1.1 conserved exported protein of unknown function compare
PP_5528 -0.6 -0.9 conserved protein of unknown function compare
PP_4224 -0.6 -2.2 Sensor histidine kinase compare
PP_2777 -0.6 -1.7 putative Acyl carrier protein compare
PP_4237 -0.6 -2.4 periplasmic protein disulfide isomerase compare
PP_5309 -0.6 -2.7 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4829 -0.6 -1.4 putative precorrin-3B synthase compare
PP_5666 -0.6 -2.0 putative microcin B17-like processing protein, McbB family compare
PP_1656 -0.6 -2.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_4488 -0.6 -2.8 conserved exported protein of unknown function compare
PP_3449 -0.6 -1.4 conserved exported protein of unknown function compare
PP_5644 -0.6 -1.2 conserved membrane protein of unknown function compare
PP_4941 -0.6 -2.2 conserved exported protein of unknown function compare
PP_4005 -0.6 -2.7 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_3756 -0.6 -2.3 TetR family transcriptional regulator compare
PP_4267 -0.6 -2.3 Recombination protein RecR compare
PP_1779 -0.6 -2.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1255 -0.6 -1.4 putative cis-4-hydroxy-D-proline oxidase compare
PP_4875 -0.5 -1.5 conserved membrane protein of unknown function compare
PP_0293 -0.5 -0.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4909 -0.5 -2.2 phosphoserine phosphatase compare
PP_5317 -0.5 -1.8 Probable chorismate pyruvate-lyase compare
PP_4778 -0.5 -2.1 23S rRNA pseudouridine 2457 synthase compare
PP_5216 -0.5 -0.7 exopolyphosphatase compare
PP_4131 -0.5 -2.1 NADH-quinone oxidoreductase subunit N compare
PP_3048 -0.5 -1.1 conserved protein of unknown function compare
PP_0313 -0.5 -2.0 putative electron transfer flavoprotein beta subunit compare
PP_2878 -0.5 -1.1 conserved protein of unknown function compare
PP_2718 -0.5 -1.5 arsenic resistance transcriptional regulator compare
PP_0484 -0.5 -2.0 transporter of an unknown substrate compare
PP_4699 -0.5 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3474 -0.5 -1.7 putative Curli fiber protein CsgE compare
PP_2472 -0.5 -1.9 putative transcriptional regulator, MerR family compare
PP_0513 -0.5 -1.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0998 -0.5 -2.5 conserved protein of unknown function compare
PP_5552 -0.5 -1.3 conserved protein of unknown function compare
PP_1004 -0.5 -1.4 conserved protein of unknown function compare
PP_1871 -0.5 -1.6 Protease HtpX compare
PP_3012 -0.5 -1.8 conserved protein of unknown function compare
PP_2532 -0.5 -1.3 conserved protein of unknown function compare
PP_3040 -0.5 -1.4 Pyocin R2_PP, holin compare
PP_2159 -0.5 -1.2 Copper-binding protein, plastocyanin/azurin family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Fusaric acid across organisms