Experiment set38IT039 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_4799 -5.2 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4265 -4.2 -5.1 DNA-binding transcriptional dual regulator compare
PP_4724 -4.2 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_0856 -4.1 -7.6 conserved lipoprotein of unknown function compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_0691 -3.8 -4.1 Glutamate 5-kinase compare
PP_4999 -3.8 -2.5 dihydroorotase-like protein compare
PP_4804 -3.4 -5.5 RlpA-like lipoprotein compare
PP_4723 -3.2 -4.4 Carbamoyl-phosphate synthase large chain compare
PP_4700 -2.9 -4.3 pantothenate synthetase compare
PP_4693 -2.8 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_4129 -2.7 -4.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2000 -2.7 -1.9 amidophosphoribosyl transferase compare
PP_0393 -2.5 -4.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4937 -2.4 -4.0 toluene tolerance protein compare
PP_2336 -2.3 -4.7 aconitate hydratase 1 compare
PP_1000 -2.2 -5.1 ornithine carbamoyltransferase, catabolic compare
PP_0339 -2.1 -3.7 Pyruvate dehydrogenase E1 component compare
PP_1824 -2.1 -2.0 Smr domain protein compare
PP_1553 -1.9 -3.0 conserved protein of unknown function compare
PP_4008 -1.9 -5.4 ATP-dependent serine protease compare
PP_4902 -1.9 -2.7 Oligoribonuclease compare
PP_4560 -1.8 -4.8 putative Ribonuclease BN compare
PP_3999 -1.8 -5.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4126 -1.7 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_4874 -1.7 -1.9 50S ribosomal protein L9 compare
PP_4943 -1.7 -2.8 putative Glycosyl transferase compare
PP_0164 -1.7 -5.1 conserved protein of unknown function compare
PP_1898 -1.7 -2.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0001 -1.7 -2.5 probable chromosome-partitioning protein compare
PP_5328 -1.6 -2.9 putative phosphate transport system permease protein compare
PP_2371 -1.6 -3.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1994 -1.5 -2.0 tRNA pseudouridine (38-40)synthase compare
PP_4342 -1.5 -4.1 flagellar synthesis regulator, putative ATPase compare
PP_5093 -1.5 -1.8 twitching motility protein compare
PP_1739 -1.5 -3.1 conserved membrane protein of unknown function compare
PP_4261 -1.5 -4.0 cation-transporting P-type ATPase compare
PP_5628 -1.5 -2.1 conserved protein of unknown function compare
PP_5654 -1.4 -2.2 putative phosphotriesterase compare
PP_2217 -1.4 -1.7 enoyl-CoA hydratase compare
PP_2999 -1.4 -1.4 Glyoxalase family protein compare
PP_4121 -1.4 -3.0 NADH-quinone oxidoreductase subunit C/D compare
PP_1344 -1.4 -2.5 conserved protein of unknown function compare
PP_5110 -1.4 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_2737 -1.4 -1.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4131 -1.4 -3.8 NADH-quinone oxidoreductase subunit N compare
PP_1198 -1.4 -3.5 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1664 -1.4 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_0846 -1.4 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_1076 -1.4 -3.6 aquaglyceroporin compare
PP_4204 -1.3 -3.0 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1217 -1.3 -4.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1734 -1.3 -3.3 Probable septum site-determining protein MinC compare
PP_5748 -1.3 -1.5 cytochrome c heme lyase subunit compare
PP_0809 -1.3 -5.1 disulfide bond formation protein B compare
PP_1187 -1.3 -4.9 sensor protein compare
PP_1218 -1.2 -2.3 putative acyl-CoA thioesterase compare
PP_2088 -1.2 -2.7 RNA polymerase sigma factor SigX compare
PP_1224 -1.2 -4.5 periplasmic subunit of the TolQRA transport system compare
PP_1428 -1.2 -1.5 Sigma factor AlgU negative regulatory protein compare
PP_2794 -1.2 -2.2 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0999 -1.2 -3.6 carbamate kinase compare
PP_5350 -1.2 -3.3 Transcriptional regulator, RpiR family compare
PP_4785 -1.2 -4.9 conserved exported protein of unknown function compare
PP_0513 -1.2 -2.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2846 -1.2 -1.8 urease accessory protein compare
PP_2299 -1.2 -2.9 Trigger factor compare
PP_1001 -1.1 -2.7 arginine deiminase compare
PP_t29 -1.1 -2.1 tRNA-Ala compare
PP_3821 -1.1 -3.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0127 -1.1 -2.4 Thiol:disulfide interchange protein compare
PP_3766 -1.1 -1.4 Lactoylglutathione lyase compare
PP_3647 -1.1 -2.0 putative Oxidoreductase compare
PP_4895 -1.1 -1.8 tRNA dimethylallyltransferase compare
PP_1237 -1.1 -1.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1778 -1.1 -4.1 Lipopolysaccharide ABC export system, permease protein compare
PP_2370 -1.1 -1.2 conserved protein of unknown function compare
PP_0848 -1.1 -1.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_2322 -1.1 -3.8 Major outer membrane lipoprotein compare
PP_2328 -1.1 -2.4 Phosphoadenosine phosphosulfate reductase compare
PP_2499 -1.1 -1.0 conserved protein of unknown function compare
PP_4004 -1.0 -3.9 DNA translocase FtsK compare
PP_4471 -1.0 -3.0 Magnesium transporter compare
PP_5659 -1.0 -1.9 protein of unknown function compare
PP_4917 -1.0 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0833 -1.0 -1.2 queuine tRNA-ribosyltransferase compare
PP_1733 -1.0 -2.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_3398 -1.0 -1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_3904 -1.0 -1.2 conserved protein of unknown function compare
PP_0794 -1.0 -2.2 1-phosphofructokinase monomer compare
PP_2107 -1.0 -1.1 conserved protein of unknown function compare
PP_5393 -1.0 -0.9 putative metal-binding chaperone compare
PP_4961 -1.0 -1.9 putative Lipoprotein compare
PP_4124 -1.0 -2.3 NADH-quinone oxidoreductase subunit G compare
PP_4571 -1.0 -4.4 cysteine synthase A compare
PP_3258 -1.0 -2.3 conserved protein of unknown function compare
PP_t12 -1.0 -1.0 tRNA-Thr compare
PP_0307 -1.0 -2.4 conserved exported protein of unknown function compare
PP_1045 -1.0 -0.9 Type II secretion pathway protein XcpP compare
PP_0003 -1.0 -1.8 16S RNA methyltransferase compare
PP_0063 -0.9 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0673 -0.9 -2.3 conserved protein of unknown function compare
PP_1002 -0.9 -2.9 arginine/ornithine antiporter compare
PP_5528 -0.9 -1.3 conserved protein of unknown function compare
PP_4569 -0.9 -1.7 conserved protein of unknown function compare
PP_1055 -0.9 -0.8 Type II secretion pathway protein GspN compare
PP_1215 -0.9 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_2387 -0.9 -1.9 conserved protein of unknown function compare
PP_0852 -0.9 -2.2 Transcriptional regulator, Cro/CI family compare
PP_4940 -0.9 -4.5 Putative glycosyltransferase compare
PP_4263 -0.9 -1.9 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2462 -0.9 -1.7 conserved protein of unknown function compare
PP_0007 -0.9 -2.7 conserved hypothetical protein compare
PP_0653 -0.9 -1.1 conserved protein of unknown function compare
PP_4419 -0.9 -2.3 transposase compare
PP_4797 -0.9 -1.2 conserved protein of unknown function compare
PP_4936 -0.9 -4.4 O-antigen polymerase compare
PP_5327 -0.9 -1.8 putative phosphate ABC transporter, permease subunit compare
PP_4696 -0.9 -2.4 Nitrogen regulation protein NR(I) compare
PP_3014 -0.9 -2.3 conserved exported protein of unknown function compare
PP_1568 -0.9 -1.1 conserved protein of unknown function compare
PP_1216 -0.9 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5600 -0.9 -2.3 conserved protein of unknown function compare
PP_0250 -0.9 -1.5 heat shock protein Hsp15 involved in ribosome recycling compare
PP_2274 -0.9 -1.8 conserved protein of unknown function compare
PP_1876 -0.9 -1.7 putative ATP/GTP-binding protein of the AAA+ family compare
PP_0960 -0.8 -2.5 phospholipid ABC transporter binding protein compare
PP_3989 -0.8 -1.5 DNA-cytosine methyltransferase compare
PP_0874 -0.8 -2.0 conserved protein of unknown function compare
PP_0855 -0.8 -0.9 conserved protein of unknown function compare
PP_4504 -0.8 -1.5 conserved exported protein of unknown function compare
PP_1381 -0.8 -0.9 4-carboxymuconolactone decarboxylase compare
PP_5216 -0.8 -1.3 exopolyphosphatase compare
PP_3522 -0.8 -2.1 conserved protein of unknown function compare
PP_0735 -0.8 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_0293 -0.8 -1.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4938 -0.8 -4.1 putative Glycosyl transferase compare
PP_4593 -0.8 -1.0 conserved protein of unknown function compare
PP_5533 -0.8 -1.0 conserved protein of unknown function compare
PP_t11 -0.8 -1.9 tRNA-Lys compare
PP_4058 -0.8 -4.1 1,4-alpha-glucan branching enzyme compare
PP_4952 -0.8 -1.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5025 -0.8 -4.0 Glucans biosynthesis glucosyltransferase H compare
PP_2122 -0.8 -2.4 molybdenum cofactor biosynthesis protein B compare
PP_1716 -0.8 -1.4 Transcriptional regulator, Cro/CI family compare
PP_2540 -0.8 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5167 -0.8 -2.6 conserved hypothetical protein compare
PP_3726 -0.8 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_3333 -0.8 -1.8 conserved protein of unknown function compare
PP_2581 -0.8 -1.3 conserved protein of unknown function compare
PP_3378 -0.8 -1.0 putative 2-ketogluconokinase compare
PP_4418 -0.7 -2.1 conserved protein of unknown function compare
PP_2197 -0.7 -2.6 conserved exported protein of unknown function compare
PP_5609 -0.7 -2.4 conserved protein of unknown function compare
PP_2187 -0.7 -2.9 Universal stress protein family compare
PP_5422 -0.7 -2.9 hypothetical protein compare
PP_0949 -0.7 -2.9 putative ATP-binding protein UPF0042 compare
PP_4988 -0.7 -2.7 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4769 -0.7 -2.4 conserved protein of unknown function compare
PP_4994 -0.7 -2.5 conserved protein of unknown function compare
PP_4662 -0.7 -2.2 conserved protein of unknown function compare
PP_3530 -0.7 -2.0 putative S-ureidoglycine aminohydrolase compare
PP_2929 -0.7 -2.7 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1454 -0.7 -1.1 conserved protein of unknown function compare
PP_5310 -0.7 -3.5 junction-specific ATP-dependent DNA helicase compare
PP_3339 -0.7 -2.2 conserved exported protein of unknown function compare
PP_2828 -0.7 -1.7 conserved protein of unknown function compare
PP_1926 -0.7 -2.1 putative phosphotyrosine-protein phosphatase compare
PP_2568 -0.7 -0.8 Ring-cleaving dioxygenase compare
PP_2067 -0.7 -1.9 putative EmrB/QacA family drug resistance transporter compare
PP_5619 -0.7 -1.9 protein of unknown function compare
PP_4555 -0.7 -1.1 conserved protein of unknown function compare
PP_3730 -0.7 -1.4 Transcriptional regulatory protein AruR compare
PP_3065 -0.7 -3.2 Pyocin R2_PP, tail formation compare
PP_2313 -0.7 -1.0 conserved membrane protein of unknown function compare
PP_t10 -0.7 -1.4 tRNA-Pro compare
PP_0880 -0.7 -2.0 dipeptide ABC transporter - putative membrane subunit compare
PP_3473 -0.7 -2.0 curli secretion and assembly outer membrane associated component compare
PP_3806 -0.7 -1.4 Hydrolase, isochorismatase family compare
PP_0961 -0.7 -2.8 toluene tolerance protein compare
PP_0989 -0.7 -2.0 glycine cleavage system H protein 1 compare
PP_4819 -0.7 -2.4 conserved protein of unknown function compare
PP_1468 -0.7 -1.5 Tyrosine recombinase XerD compare
PP_4528 -0.7 -1.0 conserved protein of unknown function compare
PP_3100 -0.7 -2.9 conserved protein of unknown function compare
PP_3447 -0.7 -0.8 conserved membrane protein of unknown function compare
PP_4225 -0.7 -1.7 two component system DNA-binding transcriptional activator QseB compare
PP_2215 -0.7 -1.4 acetyl-CoA acetyltransferase compare
PP_1232 -0.7 -3.8 conserved exported protein of unknown function compare
PP_3384 -0.7 -1.5 gluconate 2-dehydrogenase gamma subunit compare
PP_0240 -0.7 -1.3 Aliphatic sulfonates import ATP-binding protein SsuB compare
PP_1779 -0.7 -2.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4616 -0.7 -2.0 conserved protein of unknown function compare
PP_3372 -0.7 -3.0 CpxR-Pasp DNA-binding transcriptional two-component system regulator compare
PP_2700 -0.7 -1.0 AhpC/TSA family protein compare
PP_1475 -0.7 -2.7 CAIB/BAIF family protein compare
PP_2530 -0.7 -1.4 conserved protein of unknown function compare
PP_5027 -0.7 -1.1 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0516 -0.7 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_2290 -0.7 -2.7 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Fusaric acid across organisms