Experiment set38IT039 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +2.0 19.1 Sensor protein GacS compare
PP_4099 +1.8 16.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_3392 +1.3 3.1 conserved protein of unknown function compare
PP_0905 +1.3 3.1 conserved exported protein of unknown function compare
PP_3052 +1.1 1.7 conserved protein of unknown function compare
PP_0276 +1.1 2.0 Transcriptional regulator, Cro/CI family compare
PP_4369 +1.0 5.3 Flagellar M-ring protein compare
PP_1322 +1.0 1.7 putative Lipoprotein compare
PP_4344 +1.0 6.9 flagellar export pore protein compare
PP_4368 +1.0 3.5 flagellar motor switch protein compare
PP_5267 +1.0 1.7 putative cytochrome c5 compare
PP_5487 +1.0 4.3 conserved protein of unknown function compare
PP_4171 +1.0 8.5 conserved exported protein of unknown function compare
PP_3312 +0.9 2.0 putative Heat shock protein compare
PP_2330 +0.9 2.4 conserved protein of unknown function compare
PP_4389 +0.9 5.0 Flagellar basal-body rod modification protein FlgD compare
PP_4353 +0.9 3.4 Flagellar biosynthetic protein fliR compare
PP_4365 +0.9 4.9 Flagellar protein FliJ compare
PP_4354 +0.9 3.5 flagellar export apparatus subunit compare
PP_2903 +0.9 2.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4391 +0.9 4.4 flagellar basal-body rod protein FlgB compare
PP_2681 +0.9 2.2 coenzyme PQQ synthesis protein D compare
PP_4370 +0.9 4.1 Flagellar hook-basal body complex protein FliE compare
PP_3916 +0.9 2.1 conserved protein of unknown function compare
PP_0789 +0.8 2.5 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4388 +0.8 6.3 Flagellar hook protein FlgE compare
PP_4073 +0.8 2.6 conserved exported protein of unknown function compare
PP_4390 +0.8 6.3 flagellar basal-body rod protein FlgC compare
PP_2280 +0.8 2.0 conserved protein of unknown function compare
PP_5324 +0.8 1.7 Response regulator compare
PP_0377 +0.8 2.1 coenzyme PQQ synthesis protein D compare
PP_4367 +0.8 2.4 Flagellar assembly protein FliH compare
PP_4366 +0.8 5.5 flagellum-specific ATP synthase compare
PP_5456 +0.8 0.8 conserved protein of unknown function compare
PP_4669 +0.8 2.0 OmpA family protein compare
PP_1366 +0.8 1.3 Transcriptional regulator MvaT, P16 subunit compare
PP_3198 +0.8 1.0 Ferredoxin, 2Fe-2S compare
PP_4660 +0.8 2.4 Transcriptional regulator, LysR family compare
PP_3376 +0.8 2.9 putative phosphonate dehydrogenase compare
PP_2633 +0.8 1.4 conserved protein of unknown function compare
PP_4122 +0.8 1.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2331 +0.8 3.2 conserved membrane protein of unknown function compare
PP_2668 +0.8 1.6 ABC efflux transporter, ATP-binding protein compare
PP_4223 +0.8 2.5 diaminobutyrate-2-oxoglutarate transaminase compare
PP_5565 +0.8 2.1 conserved protein of unknown function compare
PP_1774 +0.8 2.1 conserved exported protein of unknown function compare
PP_4341 +0.7 4.8 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_3880 +0.7 1.3 conserved exported protein of unknown function compare
PP_3365 +0.7 1.3 Acetolactate synthase compare
PP_3946 +0.7 1.3 HTH-type transcriptional repressor NicR compare
PP_4396 +0.7 2.5 conserved protein of unknown function compare
PP_2677 +0.7 2.0 conserved exported protein of unknown function compare
PP_4136 +0.7 0.6 Transcriptional regulator, LuxR family compare
PP_1729 +0.7 2.0 conserved protein of unknown function compare
PP_0593 +0.7 1.0 putative ribosome-binding factor compare
PP_3559 +0.7 1.2 glycine betaine ABC transporter (permease) compare
PP_2880 +0.7 2.5 Transcriptional regulator, TetR family compare
PP_2800 +0.7 2.1 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_2403 +0.7 1.1 Chemotaxis protein CheY compare
PP_0916 +0.7 2.2 Amino acid transporter LysE compare
PP_4358 +0.7 3.5 flagellar synthesis, switching and energizing component compare
PP_0869 +0.7 1.4 osmoprotectant ABC transporter permease subunit compare
PP_2510 +0.7 1.3 conserved protein of unknown function compare
PP_5705 +0.7 2.1 protein of unknown function compare
PP_2307 +0.7 1.1 conserved protein of unknown function compare
PP_4361 +0.7 4.0 Flagellar hook-length control protein FliK compare
PP_0547 +0.7 2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_2342 +0.7 1.8 conserved protein of unknown function compare
PP_1513 +0.7 1.7 Ribosomal RNA small subunit methyltransferase J compare
PP_4352 +0.6 3.9 flagellin export apparatus, substrate specificity protein compare
PP_2900 +0.6 1.7 conserved protein of unknown function compare
PP_1550 +0.6 2.0 Transcriptional regulator, Cro/CI family compare
PP_1109 +0.6 4.7 Transcriptional regulator, GntR family compare
PP_0151 +0.6 2.0 conserved exported protein of unknown function compare
PP_5003 +0.6 3.7 poly(3-hydroxyalkanoate) polymerase 1 compare
PP_2404 +0.6 2.0 conserved exported protein of unknown function compare
PP_0627 +0.6 1.7 conserved protein of unknown function compare
PP_4378 +0.6 5.3 flagellin, filament structural protein compare
PP_2360 +0.6 2.6 putative type 1 pili subunit CsuA/B protein compare
PP_1845 +0.6 2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_2970 +0.6 1.0 conserved exported protein of unknown function compare
PP_5610 +0.6 1.1 protein of unknown function compare
PP_5390 +0.6 2.0 conserved hypothetical protein compare
PP_0246 +0.6 2.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_5621 +0.6 1.0 protein of unknown function compare
PP_0425 +0.6 1.5 conserved protein of unknown function compare
PP_2253 +0.6 0.7 Transcriptional regulator, GntR family compare
PP_4359 +0.6 3.6 Flagellar protein FliL compare
PP_2946 +0.6 1.6 peptidyl-tRNA hydrolase, ribosome rescue factor compare
PP_5495 +0.6 1.3 protein of unknown function compare
PP_4561 +0.6 0.9 stress response protein compare
PP_5453 +0.6 1.3 conserved protein of unknown function compare
PP_0062 +0.6 1.9 3-methyl-adenine DNA glycosylase I compare
PP_4381 +0.6 4.2 Flagellar hook-associated protein FlgK compare
PP_1258 +0.6 2.1 4-hydroxyproline epimerase compare
PP_1113 +0.6 3.4 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5145 +0.6 5.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_3328 +0.6 0.7 putative Ring-cleaving dioxygenase compare
PP_1473 +0.6 2.7 conserved protein of unknown function compare
PP_2474 +0.6 2.3 Glutathione S-transferase family protein compare
PP_5569 +0.6 1.1 protein of unknown function of phage origin compare
PP_5658 +0.6 1.4 protein of unknown function compare
PP_5005 +0.6 4.3 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_2318 +0.6 2.4 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_0585 +0.6 1.1 putative metal-sensitive transcriptional regulator, MerR family compare
PP_1390 +0.6 2.6 conserved exported protein of unknown function compare
PP_2533 +0.6 1.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_2341 +0.6 1.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2332 +0.6 2.0 conserved exported protein of unknown function compare
PP_2950 +0.6 2.1 conserved protein of unknown function compare
PP_3891 +0.6 1.0 conserved protein of unknown function compare
PP_4256 +0.6 2.0 cytochrome c oxidase subunit, cbb3-type compare
PP_3374 +0.6 1.5 conserved protein of unknown function compare
PP_4376 +0.6 3.8 flagellar filament capping protein compare
PP_5448 +0.6 1.3 conserved protein of unknown function compare
PP_1742 +0.6 1.6 conserved inner membrane protein of unknown function compare
PP_0191 +0.5 2.1 Transcriptional regulatory protein AlgQ compare
PP_2504 +0.5 2.1 putative tautomerase K2 compare
PP_2715 +0.5 1.4 ArsH protein compare
PP_0368 +0.5 4.2 putative Acyl-CoA dehydrogenase compare
PP_4045 +0.5 0.8 conserved protein of unknown function compare
PP_1655 +0.5 2.5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_3169 +0.5 3.0 conserved membrane protein of unknown function compare
PP_3118 +0.5 2.2 DNA linked enzyme involved in DNA repair compare
PP_2447 +0.5 2.4 conserved exported protein of unknown function compare
PP_3833 +0.5 1.7 Response regulator compare
PP_4966 +0.5 1.4 transcriptional regulator of methionine metabolism compare
PP_5499 +0.5 1.4 conserved protein of unknown function compare
PP_2147 +0.5 2.0 conserved exported protein of unknown function compare
PP_1269 +0.5 0.8 Universal stress protein family compare
PP_4356 +0.5 1.6 Flagellar protein FliO compare
PP_2575 +0.5 1.1 conserved exported protein of unknown function compare
PP_3285 +0.5 1.9 detoxifying thioesterase of the phenylacetate degradation pathway compare
PP_2684 +0.5 1.4 conserved membrane protein of unknown function compare
PP_3245 +0.5 0.9 conserved protein of unknown function compare
PP_2031 +0.5 1.4 conserved protein of unknown function compare
PP_1683 +0.5 1.1 Transcriptional regulator, MarR family compare
PP_1497 +0.5 2.9 Transcriptional regulator, TetR family compare
PP_4394 +0.5 2.3 flagella basal body P-ring formation protein compare
PP_4386 +0.5 1.9 flagellar basal-body rod protein FlgF compare
PP_3110 +0.5 0.9 protein of unknown function compare
PP_2785 +0.5 2.3 conserved exported protein of unknown function compare
PP_1633 +0.5 1.6 conserved exported protein of unknown function compare
PP_4905 +0.5 2.2 Flagellar motor rotation protein compare
PP_1178 +0.5 1.4 conserved protein of unknown function compare
PP_2210 +0.5 1.1 LysR family transcriptional regulator compare
PP_4337 +0.5 2.0 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_5054 +0.5 1.1 glutaredoxin 3 compare
PP_3204 +0.5 1.5 conserved protein of unknown function compare
PP_0138 +0.5 2.9 conserved membrane protein of unknown function compare
PP_1813 +0.5 1.3 ComEA-related protein compare
PP_0630 +0.5 0.7 DNA gyrase inhibitor YacG compare
PP_1731 +0.5 1.5 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_3487 +0.5 0.9 conserved exported protein of unknown function compare
PP_3460 +0.5 0.7 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1066 +0.5 1.2 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4380 +0.5 3.7 Flagellar hook-associated protein FlgL compare
PP_2583 +0.5 2.4 Acetyltransferase, GNAT family compare
PP_5338 +0.5 1.3 aspartate ammonia-lyase compare
PP_1679 +0.5 1.3 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0666 +0.5 1.4 conserved protein of unknown function compare
PP_2675 +0.5 1.5 Cytochrome c-type protein compare
PP_2137 +0.5 1.9 beta-ketoadipyl CoA thiolase, beta component compare
PP_0048 +0.5 0.9 conserved protein of unknown function compare
PP_0803 +0.5 2.8 Protein secretion ABC efflux system, membrane fusion protein compare
PP_1892 +0.5 1.1 conserved protein of unknown function compare
PP_3343 +0.5 2.2 nickel ABC transporter permease subunit compare
PP_3371 +0.5 2.3 Sensor histidine kinase compare
PP_2602 +0.5 1.7 putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
PP_2378 +0.5 0.6 Fe/S biogenesis protein NfuA compare
PP_1164 +0.5 1.3 Transcriptional regulator, LysR family compare
PP_4520 +0.5 1.7 conserved protein of unknown function compare
PP_3876 +0.5 1.1 conserved protein of unknown function compare
PP_3434 +0.5 1.5 conserved protein of unknown function compare
PP_2697 +0.5 1.6 putative oxidoreductase containing a flavin reductase domain compare
PP_3331 +0.5 2.3 conserved membrane protein of unknown function compare
PP_1575 +0.5 0.7 conserved protein of unknown function compare
PP_5077 +0.5 2.8 conserved protein of unknown function compare
PP_5549 +0.4 1.6 conserved protein of unknown function compare
PP_5221 +0.4 1.1 conserved protein of unknown function, UPF0178 family compare
PP_2098 +0.4 2.8 D-alanyl-D-alanine carboxypeptidase compare
PP_4172 +0.4 2.2 conserved exported protein of unknown function compare
PP_0865 +0.4 1.7 ECF subfamily RNA polymerase sigma-24 factor compare
PP_4911 +0.4 2.0 conserved protein of unknown function compare
PP_0796 +0.4 1.7 conserved protein of unknown function compare
PP_3539 +0.4 1.6 putative Transcriptional regulator compare
PP_3587 +0.4 1.5 lipid hydroperoxide peroxidase compare
PP_2889 +0.4 2.5 putative Transmembrane regulator PrtR compare
PP_3935 +0.4 1.3 conserved protein of unknown function compare
PP_1672 +0.4 1.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_0805 +0.4 2.8 Outer membrane efflux protein compare
PP_4904 +0.4 2.3 Flagellar motor rotation protein compare
PP_4094 +0.4 0.9 conserved protein of unknown function compare
PP_1054 +0.4 1.2 Type II secretion pathway protein XcpZ compare
PP_0190 +0.4 1.2 putative disulfide bond formation protein B compare
PP_3164 +0.4 1.0 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5473 +0.4 1.0 putative transcriptional regulator, LuxR family compare
PP_1713 +0.4 0.8 Transcriptional regulator PcaQ compare
PP_5719 +0.4 2.4 choline-responsive transcriptional repressor BetI compare
PP_1752 +0.4 2.5 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Fusaric acid across organisms