Experiment set38IT038 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most important genes:

  gene name fitness t score description  
PP_0691 -6.0 -4.1 Glutamate 5-kinase compare
PP_4799 -5.2 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4265 -4.4 -6.0 DNA-binding transcriptional dual regulator compare
PP_0856 -4.3 -8.7 conserved lipoprotein of unknown function compare
PP_1654 -4.1 -2.8 cysteine synthase B compare
PP_4693 -4.0 -7.6 RNA polymerase-binding transcription factor DksA compare
PP_5095 -4.0 -3.6 pyrroline-5-carboxylate reductase compare
PP_4999 -3.7 -2.6 dihydroorotase-like protein compare
PP_0393 -3.2 -5.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1783 -3.0 -4.5 dTDP-glucose pyrophosphorylase compare
PP_4724 -2.9 -4.5 Carbamoyl-phosphate synthase small chain compare
PP_4723 -2.7 -6.5 Carbamoyl-phosphate synthase large chain compare
PP_4943 -2.7 -3.9 putative Glycosyl transferase compare
PP_4700 -2.5 -4.8 pantothenate synthetase compare
PP_1734 -2.4 -5.8 Probable septum site-determining protein MinC compare
PP_0833 -2.3 -3.1 queuine tRNA-ribosyltransferase compare
PP_4804 -2.0 -3.3 RlpA-like lipoprotein compare
PP_1664 -2.0 -3.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_2633 -1.9 -2.3 conserved protein of unknown function compare
PP_1898 -1.9 -2.3 MotA/TolQ/ExbB proton channel family protein compare
PP_2370 -1.9 -2.7 conserved protein of unknown function compare
PP_3999 -1.9 -5.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2402 -1.9 -2.4 putative Sensor histidine kinase compare
PP_5350 -1.8 -4.7 Transcriptional regulator, RpiR family compare
PP_4785 -1.8 -4.9 conserved exported protein of unknown function compare
PP_4895 -1.8 -3.5 tRNA dimethylallyltransferase compare
PP_4937 -1.8 -4.0 toluene tolerance protein compare
PP_4936 -1.7 -7.6 O-antigen polymerase compare
PP_2322 -1.7 -9.6 Major outer membrane lipoprotein compare
PP_4938 -1.6 -8.2 putative Glycosyl transferase compare
PP_5310 -1.6 -7.2 junction-specific ATP-dependent DNA helicase compare
PP_1215 -1.5 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_5393 -1.5 -2.2 putative metal-binding chaperone compare
PP_0164 -1.5 -4.5 conserved protein of unknown function compare
PP_5328 -1.5 -1.7 putative phosphate transport system permease protein compare
PP_4902 -1.5 -2.8 Oligoribonuclease compare
PP_1344 -1.4 -2.1 conserved protein of unknown function compare
PP_0339 -1.4 -3.4 Pyruvate dehydrogenase E1 component compare
PP_4004 -1.4 -4.3 DNA translocase FtsK compare
PP_4560 -1.4 -4.7 putative Ribonuclease BN compare
PP_0566 -1.4 -1.3 translation-related factor compare
PP_1224 -1.3 -5.9 periplasmic subunit of the TolQRA transport system compare
PP_1217 -1.3 -5.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5701 -1.3 -1.3 conserved protein of unknown function compare
PP_1232 -1.3 -4.4 conserved exported protein of unknown function compare
PP_5329 -1.3 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0855 -1.3 -1.5 conserved protein of unknown function compare
PP_2000 -1.3 -2.2 amidophosphoribosyl transferase compare
PP_4940 -1.3 -5.9 Putative glycosyltransferase compare
PP_1468 -1.2 -3.9 Tyrosine recombinase XerD compare
PP_4008 -1.2 -4.2 ATP-dependent serine protease compare
PP_0001 -1.2 -1.9 probable chromosome-partitioning protein compare
PP_5090 -1.2 -3.7 putative cell division protein compare
PP_0086 -1.2 -1.6 conserved protein of unknown function compare
PP_4342 -1.2 -3.6 flagellar synthesis regulator, putative ATPase compare
PP_0999 -1.2 -4.4 carbamate kinase compare
PP_1187 -1.1 -5.7 sensor protein compare
PP_2328 -1.1 -3.6 Phosphoadenosine phosphosulfate reductase compare
PP_2337 -1.1 -2.6 aconitate isomerase compare
PP_0127 -1.1 -3.0 Thiol:disulfide interchange protein compare
PP_4917 -1.1 -3.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1001 -1.1 -2.6 arginine deiminase compare
PP_1575 -1.1 -1.9 conserved protein of unknown function compare
PP_2433 -1.1 -2.0 conserved protein of unknown function compare
PP_3449 -1.1 -2.0 conserved exported protein of unknown function compare
PP_5230 -1.1 -2.6 Tyrosine recombinase XerC compare
PP_2371 -1.0 -1.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0809 -1.0 -5.5 disulfide bond formation protein B compare
PP_5225 -1.0 -1.5 frataxin compare
PP_1729 -1.0 -1.8 conserved protein of unknown function compare
PP_0401 -1.0 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_1045 -1.0 -1.4 Type II secretion pathway protein XcpP compare
PP_1733 -1.0 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_1237 -1.0 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_3241 -1.0 -1.3 conserved exported protein of unknown function compare
PP_1198 -0.9 -1.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4994 -0.9 -2.0 conserved protein of unknown function compare
PP_4942 -0.9 -1.9 conserved protein of unknown function compare
PP_3307 -0.9 -1.9 conserved protein of unknown function compare
PP_1513 -0.9 -1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_2088 -0.9 -2.1 RNA polymerase sigma factor SigX compare
PP_4124 -0.9 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_1216 -0.9 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5546 -0.9 -1.6 conserved protein of unknown function compare
PP_5331 -0.9 -2.7 Long-chain acyl-CoA thioester hydrolase compare
PP_4058 -0.9 -5.7 1,4-alpha-glucan branching enzyme compare
PP_2336 -0.8 -2.3 aconitate hydratase 1 compare
PP_3821 -0.8 -4.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3064 -0.8 -1.1 Phage tail protein compare
PP_5519 -0.8 -1.7 conserved protein of unknown function of phage origin compare
PP_2203 -0.8 -1.0 conserved protein of unknown function compare
PP_5217 -0.8 -5.6 Polyphosphate kinase compare
PP_0184 -0.8 -3.7 Argininosuccinate lyase compare
PP_5248 -0.8 -1.0 putative hydrolase compare
PP_4482 -0.8 -2.0 Transcriptional regulator, AraC family compare
PP_4129 -0.8 -1.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1002 -0.8 -3.3 arginine/ornithine antiporter compare
PP_1020 -0.8 -1.1 putative glucose-6-phosphate 1-epimerase compare
PP_2307 -0.8 -1.9 conserved protein of unknown function compare
PP_3237 -0.8 -2.1 Universal stress protein family compare
PP_2681 -0.8 -1.4 coenzyme PQQ synthesis protein D compare
PP_3365 -0.8 -1.1 Acetolactate synthase compare
PP_5045 -0.8 -2.8 tRNA sulfurtransferase compare
PP_5483 -0.8 -1.8 conserved protein of unknown function compare
PP_4204 -0.8 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0643 -0.8 -2.3 protein of unknown function compare
PP_4120 -0.8 -1.7 NADH-quinone oxidoreductase subunit B compare
PP_1186 -0.8 -2.7 two component system DNA-binding transcriptional dual regulator compare
PP_1656 -0.8 -3.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_2320 -0.8 -5.7 conserved exported protein of unknown function compare
PP_1128 -0.8 -2.4 OmpA family protein compare
PP_5093 -0.8 -1.2 twitching motility protein compare
PP_5580 -0.8 -1.2 protein of unknown function compare
PP_3192 -0.8 -3.0 conserved protein of unknown function compare
PP_0048 -0.8 -1.1 conserved protein of unknown function compare
PP_1000 -0.8 -2.8 ornithine carbamoyltransferase, catabolic compare
PP_1466 -0.8 -2.8 Long-chain acyl-CoA thioester hydrolase family protein compare
PP_2442 -0.8 -1.9 conserved protein of unknown function, DUF480 family compare
PP_2999 -0.7 -1.1 Glyoxalase family protein compare
PP_4555 -0.7 -2.0 conserved protein of unknown function compare
PP_5015 -0.7 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4263 -0.7 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0775 -0.7 -1.5 conserved protein of unknown function compare
PP_3508 -0.7 -2.3 Protein CobW compare
PP_5486 -0.7 -1.3 conserved protein of unknown function compare
PP_0998 -0.7 -3.1 conserved protein of unknown function compare
PP_3880 -0.7 -1.0 conserved exported protein of unknown function compare
PP_1185 -0.7 -3.5 Outer membrane protein H1 compare
PP_2299 -0.7 -2.4 Trigger factor compare
PP_1635 -0.7 -1.7 DNA-binding response regulator compare
PP_4909 -0.7 -3.2 phosphoserine phosphatase compare
PP_4130 -0.7 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2624 -0.7 -1.9 conserved protein of unknown function compare
PP_4122 -0.7 -0.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3505 -0.7 -1.6 conserved protein of unknown function compare
PP_1553 -0.7 -1.7 conserved protein of unknown function compare
PP_1987 -0.7 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_3903 -0.7 -1.1 conserved protein of unknown function compare
PP_t11 -0.7 -1.6 tRNA-Lys compare
PP_1076 -0.7 -3.2 aquaglyceroporin compare
PP_4131 -0.7 -2.5 NADH-quinone oxidoreductase subunit N compare
PP_t10 -0.7 -0.7 tRNA-Pro compare
PP_2077 -0.7 -2.5 diaminopimelate decarboxylase compare
PP_4964 -0.7 -1.6 D-erythrose 4-phosphate dehydrogenase compare
PP_4166 -0.7 -2.4 conserved protein of unknown function compare
PP_5110 -0.7 -1.7 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_5216 -0.7 -0.9 exopolyphosphatase compare
PP_2108 -0.7 -2.7 conserved protein of unknown function compare
PP_0963 -0.7 -1.3 putative BolA family protein compare
PP_4340 -0.7 -2.7 response regulator for chemotactic signal transduction compare
PP_4126 -0.7 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_3637 -0.7 -0.9 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0082 -0.7 -2.9 tryptophan synthase alpha chain compare
PP_4571 -0.6 -3.3 cysteine synthase A compare
PP_0949 -0.6 -2.5 putative ATP-binding protein UPF0042 compare
PP_1022 -0.6 -3.3 glucose 6-phosphate-1-dehydrogenase compare
PP_5609 -0.6 -2.1 conserved protein of unknown function compare
PP_4261 -0.6 -2.0 cation-transporting P-type ATPase compare
PP_1055 -0.6 -1.3 Type II secretion pathway protein GspN compare
PP_4247 -0.6 -0.8 Exonuclease compare
PP_2378 -0.6 -1.6 Fe/S biogenesis protein NfuA compare
PP_1480 -0.6 -1.6 conserved protein of unknown function compare
PP_1554 -0.6 -1.7 conserved protein of unknown function compare
PP_2379 -0.6 -2.5 putative cytochrome oxidase biogenesis protein compare
PP_2475 -0.6 -2.4 Transcriptional regulator, TetR family compare
PP_4696 -0.6 -2.6 Nitrogen regulation protein NR(I) compare
PP_1779 -0.6 -3.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2748 -0.6 -1.6 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_2214 -0.6 -2.4 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_2323 -0.6 -3.5 conserved protein of unknown function compare
PP_5167 -0.6 -1.5 conserved hypothetical protein compare
PP_2784 -0.6 -1.3 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4236 -0.6 -2.0 putative Thiol:disulfide interchange protein dsbE compare
PP_4213 -0.6 -1.2 putative dipeptidase compare
PP_1663 -0.6 -3.2 conserved exported protein of unknown function compare
PP_3447 -0.6 -0.8 conserved membrane protein of unknown function compare
PP_5185 -0.6 -2.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4941 -0.6 -2.7 conserved exported protein of unknown function compare
PP_4832 -0.6 -2.1 Precorrin-6x reductase compare
PP_4982 -0.6 -3.0 putative cytochrome b561, iron-regulated compare
PP_4546 -0.6 -1.7 ATP-dependent helicase HrpA compare
PP_5279 -0.6 -1.6 conserved protein of unknown function compare
PP_2152 -0.6 -2.2 glycerophosphoryl diester phosphodiesterase compare
PP_0035 -0.6 -1.5 putative bactoprenol-linked glycose transferase compare
PP_0236 -0.6 -1.1 NAD(P)H-dependent FMN reductase subunit compare
PP_0063 -0.6 -2.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3946 -0.6 -1.0 HTH-type transcriptional repressor NicR compare
PP_3596 -0.6 -2.6 D-lysine oxidase compare
PP_2883 -0.6 -0.7 conserved protein of unknown function compare
PP_5706 -0.6 -0.9 Sec translocation complex - SecG subunit compare
PP_5571 -0.6 -0.8 conserved protein of unknown function compare
PP_2989 -0.6 -2.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4121 -0.6 -2.0 NADH-quinone oxidoreductase subunit C/D compare
PP_2422 -0.6 -1.6 conserved protein of unknown function compare
PP_1938 -0.6 -1.0 conserved protein of unknown function compare
PP_2234 -0.6 -2.2 Transcriptional regulator, AraC family compare
PP_0673 -0.6 -1.8 conserved protein of unknown function compare
PP_0677 -0.6 -2.3 putative Lipoprotein compare
PP_3473 -0.5 -1.5 curli secretion and assembly outer membrane associated component compare
PP_2232 -0.5 -1.4 XRE family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Fusaric acid across organisms