Experiment set38IT038 for Pseudomonas putida KT2440

Compare to:

R2A with Fusaric acid 120 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +2.1 20.1 Sensor protein GacS compare
PP_4099 +2.0 16.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4199 +1.6 3.2 putative Lipoprotein compare
PP_4373 +1.1 10.0 Transcriptional regulator FleQ compare
PP_5054 +1.0 4.0 glutaredoxin 3 compare
PP_4354 +1.0 2.4 flagellar export apparatus subunit compare
PP_5610 +1.0 2.5 protein of unknown function compare
PP_2280 +0.9 3.5 conserved protein of unknown function compare
PP_3580 +0.9 1.5 conserved protein of unknown function compare
PP_4368 +0.9 4.7 flagellar motor switch protein compare
PP_3481 +0.9 2.7 conserved exported protein of unknown function compare
PP_4171 +0.9 7.9 conserved exported protein of unknown function compare
PP_4369 +0.9 6.5 Flagellar M-ring protein compare
PP_5473 +0.8 2.4 putative transcriptional regulator, LuxR family compare
PP_3808 +0.8 2.5 Antibiotic synthesis protein MbtH compare
PP_0087 +0.8 2.7 conserved exported protein of unknown function compare
PP_4828 +0.8 1.8 Precorrin-8X methylmutase compare
PP_3971 +0.8 1.8 conserved protein of unknown function compare
PP_1428 +0.8 1.9 Sigma factor AlgU negative regulatory protein compare
PP_4353 +0.8 4.5 Flagellar biosynthetic protein fliR compare
PP_2793 +0.8 1.4 Acyl-CoA dehydrogenase family protein compare
PP_1479 +0.8 2.5 HicB protein compare
PP_4388 +0.7 5.7 Flagellar hook protein FlgE compare
PP_5017 +0.7 1.3 Sec-independent protein translocase protein TatB compare
PP_2668 +0.7 1.4 ABC efflux transporter, ATP-binding protein compare
PP_4385 +0.7 3.5 flagellar basal-body rod protein FlgG compare
PP_t29 +0.7 1.4 tRNA-Ala compare
PP_5267 +0.7 1.4 putative cytochrome c5 compare
PP_5537 +0.7 1.3 conserved membrane protein of unknown function compare
PP_2756 +0.7 1.5 conserved protein of unknown function compare
PP_4792 +0.7 1.9 conserved exported protein of unknown function compare
PP_t64 +0.7 2.3 tRNA-Gly compare
PP_0022 +0.7 1.2 hypothetical protein compare
PP_4396 +0.7 2.6 conserved protein of unknown function compare
PP_3035 +0.7 1.7 conserved protein of unknown function compare
PP_3198 +0.7 1.9 Ferredoxin, 2Fe-2S compare
PP_1556 +0.7 2.4 conserved protein of unknown function compare
PP_0345 +0.7 2.1 putative Heptose kinase WapP compare
PP_4389 +0.7 3.6 Flagellar basal-body rod modification protein FlgD compare
PP_4419 +0.7 3.5 transposase compare
PP_0750 +0.7 3.0 conserved protein of unknown function compare
PP_4390 +0.7 4.5 flagellar basal-body rod protein FlgC compare
PP_5145 +0.7 5.6 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1903 +0.7 2.3 putative phosphotyrosine-protein phosphatase compare
PP_4352 +0.7 5.2 flagellin export apparatus, substrate specificity protein compare
PP_4344 +0.7 4.7 flagellar export pore protein compare
PP_2416 +0.7 2.0 putative Iron ABC transporter, ATP-binding protein compare
PP_4386 +0.7 4.3 flagellar basal-body rod protein FlgF compare
PP_4136 +0.7 0.5 Transcriptional regulator, LuxR family compare
PP_1381 +0.7 1.3 4-carboxymuconolactone decarboxylase compare
PP_4358 +0.6 3.9 flagellar synthesis, switching and energizing component compare
PP_4370 +0.6 2.5 Flagellar hook-basal body complex protein FliE compare
PP_1004 +0.6 1.9 conserved protein of unknown function compare
PP_1269 +0.6 1.2 Universal stress protein family compare
PP_0274 +0.6 1.7 putative transcriptional regulator containing HTH domain compare
PP_0821 +0.6 2.3 conserved exported protein of unknown function compare
PP_4444 +0.6 2.1 transposase compare
PP_4382 +0.6 4.1 Peptidoglycan hydrolase FlgJ compare
PP_3378 +0.6 1.4 putative 2-ketogluconokinase compare
PP_4366 +0.6 4.3 flagellum-specific ATP synthase compare
PP_0574 +0.6 4.7 DNA-binding response regulator, LuxR family compare
PP_0377 +0.6 1.6 coenzyme PQQ synthesis protein D compare
PP_2046 +0.6 2.3 Transcriptional regulator, LysR family compare
PP_5456 +0.6 1.4 conserved protein of unknown function compare
PP_4162 +0.6 3.4 conserved membrane protein of unknown function compare
PP_4836 +0.6 2.8 conserved exported protein of unknown function compare
PP_4384 +0.6 4.0 Flagellar L-ring protein compare
PP_4870 +0.6 1.4 Azurin compare
PP_0062 +0.6 2.1 3-methyl-adenine DNA glycosylase I compare
PP_4874 +0.6 1.7 50S ribosomal protein L9 compare
PP_5001 +0.6 2.9 protease HslVU, ATPase component compare
PP_2889 +0.6 2.2 putative Transmembrane regulator PrtR compare
PP_5241 +0.6 0.6 DNA-binding response regulator, LuxR family compare
PP_4365 +0.6 2.6 Flagellar protein FliJ compare
PP_0848 +0.6 1.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1122 +0.6 0.9 OmpA family protein compare
PP_2747 +0.6 1.3 conserved protein of unknown function compare
PP_2387 +0.6 0.9 conserved protein of unknown function compare
PP_1110 +0.6 1.8 serine acetyltransferase compare
PP_3328 +0.5 0.9 putative Ring-cleaving dioxygenase compare
PP_2649 +0.5 2.4 Transcriptional regulator, LysR family compare
PP_0630 +0.5 0.9 DNA gyrase inhibitor YacG compare
PP_5453 +0.5 0.9 conserved protein of unknown function compare
PP_1410 +0.5 0.8 conserved protein of unknown function compare
PP_2403 +0.5 0.9 Chemotaxis protein CheY compare
PP_4341 +0.5 3.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_2349 +0.5 3.3 nitrite transporter, HPP family (from data) compare
PP_4391 +0.5 3.1 flagellar basal-body rod protein FlgB compare
PP_2675 +0.5 1.9 Cytochrome c-type protein compare
PP_5723 +0.5 2.3 protein of unknown function compare
PP_0919 +0.5 1.9 conserved protein of unknown function compare
PP_4381 +0.5 4.0 Flagellar hook-associated protein FlgK compare
PP_3726 +0.5 1.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_0880 +0.5 1.7 dipeptide ABC transporter - putative membrane subunit compare
PP_0805 +0.5 4.0 Outer membrane efflux protein compare
PP_4771 +0.5 2.0 conserved membrane protein of unknown function compare
PP_3539 +0.5 1.9 putative Transcriptional regulator compare
PP_5508 +0.5 0.8 conserved protein of unknown function compare
PP_t13 +0.5 1.1 tRNA-Lys compare
PP_2976 +0.5 1.4 putative transposase compare
PP_4367 +0.5 1.6 Flagellar assembly protein FliH compare
PP_2602 +0.5 2.5 putative 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
PP_4173 +0.5 3.7 Sensor histidine kinase/response regulator compare
PP_4905 +0.5 2.7 Flagellar motor rotation protein compare
PP_1672 +0.5 2.1 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2441 +0.5 2.0 conserved protein of unknown function compare
PP_4251 +0.5 1.7 cytochrome c oxidase subunit, cbb3-type compare
PP_1895 +0.5 1.8 putative ABC transporter - ATP binding subunit compare
PP_2526 +0.5 2.1 conserved membrane protein of unknown function compare
PP_0948 +0.5 1.0 Phosphocarrier protein HPr compare
PP_4054 +0.5 1.6 conserved protein of unknown function compare
PP_5471 +0.5 1.3 putative response regulator receiver protein compare
PP_3051 +0.5 1.5 Pyocin R2_PP, tail spike protein compare
PP_4380 +0.5 4.1 Flagellar hook-associated protein FlgL compare
PP_3374 +0.5 2.2 conserved protein of unknown function compare
PP_3800 +0.5 2.1 conserved protein of unknown function compare
PP_4449 +0.5 1.7 conserved protein of unknown function compare
PP_3840 +0.5 1.1 conserved protein of unknown function compare
PP_4904 +0.5 2.7 Flagellar motor rotation protein compare
PP_2231 +0.5 1.8 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_4359 +0.5 3.1 Flagellar protein FliL compare
PP_5597 +0.5 1.3 conserved protein of unknown function compare
PP_5628 +0.5 1.3 conserved protein of unknown function compare
PP_1970 +0.5 2.6 putative Lipoprotein compare
PP_2030 +0.5 2.3 conserved protein of unknown function compare
PP_3906 +0.5 1.5 conserved protein of unknown function compare
PP_1404 +0.5 1.8 conserved protein of unknown function compare
PP_4531 +0.5 1.8 conserved exported protein of unknown function compare
PP_4018 +0.5 1.1 Acetyltransferase, GNAT family compare
PP_2546 +0.5 2.5 conserved membrane protein of unknown function compare
PP_1109 +0.5 3.8 Transcriptional regulator, GntR family compare
PP_3164 +0.5 1.8 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_5669 +0.5 2.3 ABC transporter related compare
PP_5659 +0.5 1.3 protein of unknown function compare
PP_2342 +0.5 2.6 conserved protein of unknown function compare
PP_4581 +0.5 1.4 putative amidotransferase compare
PP_2153 +0.5 1.5 conserved protein of unknown function compare
PP_0355 +0.5 2.0 Response regulator compare
PP_4361 +0.5 1.9 Flagellar hook-length control protein FliK compare
PP_1367 +0.5 2.2 formyltetrahydrofolate hydrolase compare
PP_5005 +0.5 3.5 Poly(3-hydroxyalkanoate) polymerase 2 compare
PP_4517 +0.5 1.0 conserved protein of unknown function compare
PP_3506 +0.5 2.6 Magnesium chelatase, subunit ChII compare
PP_1062 +0.5 1.7 MutT/nudix family protein compare
PP_0368 +0.5 3.5 putative Acyl-CoA dehydrogenase compare
PP_3712 +0.4 2.8 conserved protein of unknown function compare
PP_0876 +0.4 2.4 Transcriptional regulator, AraC family compare
PP_2500 +0.4 1.6 conserved protein of unknown function compare
PP_1028 +0.4 1.2 Transcriptional regulator, LysR family compare
PP_0071 +0.4 2.6 conserved protein of unknown function compare
PP_1358 +0.4 2.4 putative heme iron utilization protein compare
PP_3509 +0.4 1.6 Glyoxalase family protein compare
PP_0153 +0.4 1.3 hypothetical protein compare
PP_0051 +0.4 2.4 putative sigma-54 dependent transcriptional regulator compare
PP_3258 +0.4 0.9 conserved protein of unknown function compare
PP_3254 +0.4 1.8 putative Nucleosidase compare
PP_5598 +0.4 0.9 conserved protein of unknown function compare
PP_4050 +0.4 3.5 glycogen synthase compare
PP_5674 +0.4 1.7 conserved protein of unknown function compare
PP_5490 +0.4 2.4 site-specific DNA recombinase compare
PP_0784 +0.4 1.8 conserved protein of unknown function compare
PP_2348 +0.4 1.8 Sensor histidine kinase compare
PP_5705 +0.4 1.3 protein of unknown function compare
PP_4172 +0.4 2.1 conserved exported protein of unknown function compare
PP_0058 +0.4 3.1 putative 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_4378 +0.4 3.4 flagellin, filament structural protein compare
PP_1366 +0.4 0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_3484 +0.4 2.0 Response regulator receiver protein compare
PP_5240 +0.4 1.6 Response regulator compare
PP_2196 +0.4 1.3 agmatinase compare
PP_1239 +0.4 1.5 Metallo-beta-lactamase family protein compare
PP_2969 +0.4 1.7 putative repressor of copper utilisation proteins compare
PP_2175 +0.4 1.6 putative 3-oxoacyl-(Acyl-carrier-protein) reductase compare
PP_2717 +0.4 1.9 arsenite/antimonite transporter compare
PP_5004 +0.4 2.4 Poly(3-hydroxyalkanoate) depolymerase compare
PP_1925 +0.4 2.8 putative Monooxygenase compare
PP_1068 +0.4 1.5 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_3888 +0.4 1.6 conserved protein of unknown function compare
PP_0095 +0.4 2.2 putative enzyme of unknown function compare
PP_3050 +0.4 2.3 conserved protein of unknown function compare
PP_2720 +0.4 0.8 conserved protein of unknown function compare
PP_1808 +0.4 1.2 glucose-6-phosphate isomerase compare
PP_0440 +0.4 0.8 Elongation factor Tu-A compare
PP_0803 +0.4 2.8 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5448 +0.4 1.2 conserved protein of unknown function compare
PP_1683 +0.4 0.9 Transcriptional regulator, MarR family compare
PP_1113 +0.4 3.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_0806 +0.4 3.7 putative Surface adhesion protein compare
PP_2847 +0.4 0.9 Urease accessory protein UreJ compare
PP_2437 +0.4 2.2 putative Acyl-CoA dehydrogenase compare
PP_4890 +0.4 1.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_4337 +0.4 2.3 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2931 +0.4 0.7 conserved protein of unknown function compare
PP_0191 +0.4 1.5 Transcriptional regulatory protein AlgQ compare
PP_2011 +0.4 1.9 conserved exported protein of unknown function compare
PP_5475 +0.4 0.8 conserved protein of unknown function compare
PP_2722 +0.4 1.4 conserved protein of unknown function compare
PP_5505 +0.4 1.4 conserved transmembrane protein of unknown function compare
PP_0903 +0.4 1.8 conserved protein of unknown function compare
PP_3323 +0.4 1.4 CobW/P47K family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Fusaric acid across organisms