Experiment set38IT032 for Pseudomonas putida KT2440

Compare to:

R2A with Polymyxin B sulfate 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
PP_2903 -5.7 -3.7 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_2720 -5.3 -2.0 conserved protein of unknown function compare
PP_5022 -4.5 -2.4 Glutamine transport ATP-binding protein GlnQ compare
PP_t10 -4.5 -2.3 tRNA-Pro compare
PP_0691 -4.4 -3.1 Glutamate 5-kinase compare
PP_3098 -4.4 -1.7 conserved protein of unknown function compare
PP_3037 -4.4 -2.5 C4-type zinc finger protein, DksA/TraR family compare
PP_4701 -4.3 -1.6 glucose-6-phosphate isomerase compare
PP_0999 -4.1 -5.2 carbamate kinase compare
PP_5528 -4.1 -2.1 conserved protein of unknown function compare
PP_4265 -4.1 -2.8 DNA-binding transcriptional dual regulator compare
PP_2044 -4.1 -2.1 conserved inner membrane protein of unknown function compare
PP_5095 -4.0 -2.7 pyrroline-5-carboxylate reductase compare
PP_5471 -3.9 -1.9 putative response regulator receiver protein compare
PP_2847 -3.9 -2.0 Urease accessory protein UreJ compare
PP_1605 -3.9 -3.5 Ribonuclease HII compare
PP_1048 -3.8 -2.4 putative protein secretion protein for export compare
PP_4045 -3.8 -2.9 conserved protein of unknown function compare
PP_1353 -3.8 -3.7 conserved membrane protein of unknown function compare
PP_4424 -3.8 -2.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4799 -3.8 -2.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3946 -3.8 -2.0 HTH-type transcriptional repressor NicR compare
PP_1054 -3.7 -2.3 Type II secretion pathway protein XcpZ compare
PP_4693 -3.6 -7.0 RNA polymerase-binding transcription factor DksA compare
PP_1002 -3.5 -7.5 arginine/ornithine antiporter compare
PP_2880 -3.4 -2.2 Transcriptional regulator, TetR family compare
PP_1096 -3.4 -2.9 putative electron transport complex protein compare
PP_4098 -3.3 -2.6 UvrABC system protein C compare
PP_4938 -3.3 -7.0 putative Glycosyl transferase compare
PP_2337 -3.3 -3.2 aconitate isomerase compare
PP_0001 -3.3 -2.9 probable chromosome-partitioning protein compare
PP_1099 -3.2 -3.1 Cold shock protein CapB compare
PP_5202 -3.1 -1.6 putative cell division protein compare
PP_1783 -3.1 -2.2 dTDP-glucose pyrophosphorylase compare
PP_2341 -3.1 -1.9 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1322 -3.1 -1.4 putative Lipoprotein compare
PP_0856 -3.1 -5.2 conserved lipoprotein of unknown function compare
PP_5701 -3.0 -1.6 conserved protein of unknown function compare
PP_0833 -2.9 -2.0 queuine tRNA-ribosyltransferase compare
PP_1733 -2.9 -4.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4961 -2.9 -1.9 putative Lipoprotein compare
PP_1097 -2.8 -1.3 Methionine--tRNA ligase compare
PP_2930 -2.8 -4.1 putative L-serine dehydratase compare
PP_4124 -2.8 -2.7 NADH-quinone oxidoreductase subunit G compare
PP_2794 -2.8 -1.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4895 -2.8 -3.8 tRNA dimethylallyltransferase compare
PP_4253 -2.8 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_5054 -2.8 -2.6 glutaredoxin 3 compare
PP_5027 -2.8 -1.6 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4874 -2.8 -1.8 50S ribosomal protein L9 compare
PP_3541 -2.8 -2.0 Transporter, MgtC family compare
PP_0725 -2.7 -5.2 conserved hypothetical TPR repeat protein compare
PP_1802 -2.7 -8.8 glycosyl transferase compare
PP_4943 -2.7 -2.6 putative Glycosyl transferase compare
PP_4994 -2.7 -3.4 conserved protein of unknown function compare
PP_1001 -2.6 -4.1 arginine deiminase compare
PP_4555 -2.6 -2.6 conserved protein of unknown function compare
PP_4936 -2.6 -5.4 O-antigen polymerase compare
PP_5706 -2.5 -2.8 Sec translocation complex - SecG subunit compare
PP_4999 -2.5 -1.7 dihydroorotase-like protein compare
PP_2371 -2.5 -3.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2370 -2.5 -2.3 conserved protein of unknown function compare
PP_5198 -2.5 -3.7 conserved protein of unknown function compare
PP_1000 -2.5 -5.1 ornithine carbamoyltransferase, catabolic compare
PP_1779 -2.5 -4.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1801 -2.5 -5.4 Glycosyl transferase WbpY compare
PP_2073 -2.5 -1.6 Acetyltransferase, GNAT family compare
PP_1734 -2.5 -3.9 Probable septum site-determining protein MinC compare
PP_3460 -2.5 -2.1 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_1217 -2.4 -4.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2070 -2.4 -1.4 Transcriptional regulator, AraC family compare
PP_0293 -2.4 -1.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2526 -2.4 -1.9 conserved membrane protein of unknown function compare
PP_1804 -2.4 -5.1 Glycosyl transferase WbpL compare
PP_0888 -2.4 -2.5 Photosynthetic apparatus regulatory protein RegA compare
PP_4122 -2.3 -2.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1764 -2.3 -3.2 Phosphoglycolate phosphatase 2 compare
PP_3140 -2.3 -3.6 Glycosyl transferase, group 2 family protein compare
PP_3821 -2.3 -5.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1799 -2.3 -6.6 GDP-mannose 4,6-dehydratase compare
PP_3241 -2.3 -1.2 conserved exported protein of unknown function compare
PP_4724 -2.3 -2.2 Carbamoyl-phosphate synthase small chain compare
PP_1568 -2.2 -1.2 conserved protein of unknown function compare
PP_5571 -2.2 -1.2 conserved protein of unknown function compare
PP_4503 -2.2 -2.3 DNA-binding response regulator compare
PP_1268 -2.2 -1.7 putative HtrA suppressor protein sohA compare
PP_4804 -2.2 -3.3 RlpA-like lipoprotein compare
PP_2631 -2.2 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1803 -2.2 -6.0 UDP-sugar epimerase compare
PP_0393 -2.2 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0152 -2.2 -1.9 conserved exported protein of unknown function compare
PP_3043 -2.1 -1.1 conserved protein of unknown function compare
PP_5552 -2.1 -1.3 conserved protein of unknown function compare
PP_3551 -2.1 -1.2 DNA-binding response regulator, LuxR family compare
PP_2511 -2.1 -2.4 conserved protein of unknown function compare
PP_3365 -2.1 -1.1 Acetolactate synthase compare
PP_4560 -2.1 -3.7 putative Ribonuclease BN compare
PP_2121 -2.1 -1.6 putative Lipoprotein compare
PP_0998 -2.0 -4.1 conserved protein of unknown function compare
PP_0855 -2.0 -1.8 conserved protein of unknown function compare
PP_3576 -2.0 -2.5 putative Transmembrane sensor compare
PP_4556 -2.0 -2.5 conserved protein of unknown function compare
PP_3346 -1.9 -2.0 Nickel transporter ATP-binding protein compare
PP_1729 -1.9 -1.5 conserved protein of unknown function compare
PP_5483 -1.9 -1.4 conserved protein of unknown function compare
PP_5604 -1.9 -1.1 putative subtilisin-like serine protease compare
PP_1994 -1.9 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_4940 -1.9 -4.3 Putative glycosyltransferase compare
PP_2497 -1.9 -1.7 conserved protein of unknown function compare
PP_4204 -1.8 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2809 -1.8 -1.8 conserved membrane protein of unknown function compare
PP_1812 -1.8 -1.6 conserved protein of unknown function compare
PP_1831 -1.8 -3.2 putative Membrane protein compare
PP_4268 -1.8 -1.0 nucleoid-associated broad specificity regulator compare
PP_3564 -1.8 -2.4 Transcriptional regulator, AraC family compare
PP_0809 -1.8 -5.7 disulfide bond formation protein B compare
PP_1800 -1.8 -4.6 Oxidoreductase Rmd compare
PP_4723 -1.8 -3.2 Carbamoyl-phosphate synthase large chain compare
PP_2718 -1.8 -1.6 arsenic resistance transcriptional regulator compare
PP_5329 -1.8 -2.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1232 -1.7 -3.5 conserved exported protein of unknown function compare
PP_2330 -1.7 -2.0 conserved protein of unknown function compare
PP_1176 -1.7 -1.1 conserved protein of unknown function compare
PP_1898 -1.7 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4609 -1.7 -2.6 conserved membrane protein of unknown function compare
PP_2409 -1.7 -1.4 cobalt-zinc-cadmium resistance protein compare
PP_1076 -1.7 -3.8 aquaglyceroporin compare
PP_5426 -1.7 -3.1 conserved protein of unknown function compare
PP_1198 -1.7 -2.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4880 -1.7 -6.4 exoribonuclease R compare
PP_1808 -1.7 -2.3 glucose-6-phosphate isomerase compare
PP_1730 -1.7 -2.4 Probable M18 family aminopeptidase 2 compare
PP_1049 -1.7 -2.3 putative protein secretion protein for export compare
PP_1116 -1.7 -3.7 Site-specific recombinase, resolvase family compare
PP_3837 -1.7 -1.9 inner membrane protein of unknown function compare
PP_1022 -1.7 -3.1 glucose 6-phosphate-1-dehydrogenase compare
PP_1776 -1.6 -6.3 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1780 -1.6 -8.2 putative mannosyltransferase compare
PP_4690 -1.6 -2.5 Rieske 2Fe-2S family protein compare
PP_3411 -1.6 -1.0 conserved protein of unknown function compare
PP_4004 -1.6 -2.3 DNA translocase FtsK compare
PP_1513 -1.6 -1.2 Ribosomal RNA small subunit methyltransferase J compare
PP_4120 -1.6 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_4264 -1.6 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_5310 -1.6 -4.5 junction-specific ATP-dependent DNA helicase compare
PP_1055 -1.6 -1.4 Type II secretion pathway protein GspN compare
PP_4263 -1.5 -1.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2883 -1.5 -1.0 conserved protein of unknown function compare
PP_1621 -1.5 -2.8 Protein-L-isoaspartate O-methyltransferase compare
PP_1845 -1.5 -2.0 Enoyl-CoA hydratase/isomerase family protein compare
PP_2950 -1.5 -1.9 conserved protein of unknown function compare
PP_3336 -1.5 -2.6 conserved protein of unknown function compare
PP_0832 -1.5 -3.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0339 -1.5 -1.1 Pyruvate dehydrogenase E1 component compare
PP_2887 -1.5 -3.1 Catalase-related peroxidase compare
PP_1528 -1.5 -0.9 conserved protein of unknown function compare
PP_1318 -1.5 -3.1 Cytochrome b compare
PP_5331 -1.5 -1.8 Long-chain acyl-CoA thioester hydrolase compare
PP_2032 -1.5 -2.8 putative ATPase compare
PP_1493 -1.5 -2.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1805 -1.5 -6.3 Polysaccharide biosynthesis protein compare
PP_1713 -1.5 -0.8 Transcriptional regulator PcaQ compare
PP_4627 -1.5 -2.5 transcriptional regulator, LysR family compare
PP_5007 -1.5 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2290 -1.5 -1.2 conserved protein of unknown function compare
PP_1575 -1.5 -1.3 conserved protein of unknown function compare
PP_5328 -1.5 -2.0 putative phosphate transport system permease protein compare
PP_5121 -1.5 -1.4 conserved exported protein of unknown function compare
PP_1535 -1.5 -1.4 putative Methyltransferase compare
PP_1045 -1.4 -1.1 Type II secretion pathway protein XcpP compare
PP_0262 -1.4 -1.7 conserved protein of unknown function compare
PP_3508 -1.4 -2.0 Protein CobW compare
PP_1415 -1.4 -1.7 putative membrane associated enzyme subunit compare
PP_3532 -1.4 -1.1 Transcriptional regulator, AsnC family compare
PP_4130 -1.4 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2500 -1.4 -1.4 conserved protein of unknown function compare
PP_3812 -1.4 -3.5 putative Lipase compare
PP_3749 -1.4 -1.5 conserved protein of unknown function compare
PP_5546 -1.4 -1.5 conserved protein of unknown function compare
PP_3559 -1.4 -1.2 glycine betaine ABC transporter (permease) compare
PP_4989 -1.4 -1.8 Protein PilJ compare
PP_0738 -1.4 -1.7 conserved protein of unknown function compare
PP_4622 -1.4 -1.5 Hmg transcriptional repressor compare
PP_3295 -1.4 -1.4 YeeE/YedE family protein compare
PP_0949 -1.4 -2.8 putative ATP-binding protein UPF0042 compare
PP_4997 -1.4 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4273 -1.4 -1.2 Transcriptional regulator, MerR family compare
PP_5480 -1.4 -1.7 conserved exported protein of unknown function compare
PP_3337 -1.3 -2.2 conserved membrane protein of unknown function compare
PP_3880 -1.3 -0.9 conserved exported protein of unknown function compare
PP_2835 -1.3 -1.1 putative oxidoreductase compare
PP_1053 -1.3 -2.7 Type II secretion pathway protein XcpY compare
PP_4832 -1.3 -1.8 Precorrin-6x reductase compare
PP_3227 -1.3 -1.6 Transcriptional regulator, LysR family compare
PP_4739 -1.3 -1.2 conserved protein of unknown function compare
PP_5279 -1.3 -1.5 conserved protein of unknown function compare
PP_5514 -1.3 -2.6 conserved protein of unknown function compare
PP_5052 -1.3 -1.3 tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent compare
PP_0789 -1.3 -2.2 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_4666 -1.3 -3.0 3-hydroxyisobutyrate dehydrogenase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in stress experiments

For stress Polymyxin B sulfate across organisms