Experiment set38IT028 for Pseudomonas putida KT2440

Compare to:

R2A with Polymyxin B sulfate 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
PP_4943 -5.2 -2.9 putative Glycosyl transferase compare
PP_4265 -5.0 -3.4 DNA-binding transcriptional dual regulator compare
PP_0691 -4.9 -4.7 Glutamate 5-kinase compare
PP_4799 -4.7 -3.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -4.1 -7.1 conserved lipoprotein of unknown function compare
PP_4693 -3.9 -7.7 RNA polymerase-binding transcription factor DksA compare
PP_4724 -3.4 -3.3 Carbamoyl-phosphate synthase small chain compare
PP_4999 -3.3 -1.9 dihydroorotase-like protein compare
PP_3821 -3.1 -8.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1237 -3.1 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5508 -3.0 -1.1 conserved protein of unknown function compare
PP_0127 -2.8 -4.6 Thiol:disulfide interchange protein compare
PP_1734 -2.8 -5.3 Probable septum site-determining protein MinC compare
PP_5328 -2.8 -3.2 putative phosphate transport system permease protein compare
PP_4940 -2.7 -7.4 Putative glycosyltransferase compare
PP_2402 -2.7 -2.8 putative Sensor histidine kinase compare
PP_4804 -2.6 -4.3 RlpA-like lipoprotein compare
PP_4895 -2.5 -5.5 tRNA dimethylallyltransferase compare
PP_1232 -2.5 -5.7 conserved exported protein of unknown function compare
PP_5095 -2.4 -1.6 pyrroline-5-carboxylate reductase compare
PP_2337 -2.3 -2.9 aconitate isomerase compare
PP_4004 -2.2 -6.6 DNA translocase FtsK compare
PP_1562 -2.2 -1.9 putative Phage terminase, small subunit compare
PP_1215 -2.1 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_4938 -2.1 -8.3 putative Glycosyl transferase compare
PP_0566 -2.1 -1.1 translation-related factor compare
PP_4723 -2.1 -5.1 Carbamoyl-phosphate synthase large chain compare
PP_1198 -2.1 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2000 -2.1 -1.4 amidophosphoribosyl transferase compare
PP_2322 -2.0 -4.9 Major outer membrane lipoprotein compare
PP_1779 -2.0 -3.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4936 -1.9 -6.0 O-antigen polymerase compare
PP_1783 -1.9 -3.1 dTDP-glucose pyrophosphorylase compare
PP_1217 -1.9 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4942 -1.9 -2.9 conserved protein of unknown function compare
PP_2307 -1.9 -2.7 conserved protein of unknown function compare
PP_0809 -1.9 -6.8 disulfide bond formation protein B compare
PP_1999 -1.8 -0.9 membrane protein required for colicin V production compare
PP_1317 -1.8 -4.3 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4902 -1.8 -3.8 Oligoribonuclease compare
PP_1428 -1.8 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_1778 -1.7 -5.9 Lipopolysaccharide ABC export system, permease protein compare
PP_4785 -1.7 -7.1 conserved exported protein of unknown function compare
PP_1804 -1.7 -4.8 Glycosyl transferase WbpL compare
PP_1776 -1.7 -8.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4262 -1.7 -2.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_1800 -1.7 -7.5 Oxidoreductase Rmd compare
PP_5329 -1.7 -3.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1898 -1.7 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_3903 -1.7 -2.0 conserved protein of unknown function compare
PP_2328 -1.7 -3.5 Phosphoadenosine phosphosulfate reductase compare
PP_2302 -1.7 -4.9 DNA-binding, ATP-dependent protease compare
PP_1224 -1.7 -4.7 periplasmic subunit of the TolQRA transport system compare
PP_4247 -1.6 -1.3 Exonuclease compare
PP_1002 -1.6 -4.3 arginine/ornithine antiporter compare
PP_0293 -1.6 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0938 -1.6 -7.4 conserved protein of unknown function compare
PP_1544 -1.6 -3.2 conserved protein of unknown function compare
PP_5393 -1.6 -1.5 putative metal-binding chaperone compare
PP_1325 -1.6 -6.0 putative lipoprotein compare
PP_4253 -1.5 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_4102 -1.5 -1.8 conserved protein of unknown function compare
PP_2622 -1.5 -2.5 conserved protein of unknown function compare
PP_1802 -1.5 -7.1 glycosyl transferase compare
PP_1186 -1.5 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_1805 -1.5 -7.5 Polysaccharide biosynthesis protein compare
PP_1654 -1.5 -2.5 cysteine synthase B compare
PP_1055 -1.5 -1.5 Type II secretion pathway protein GspN compare
PP_1216 -1.5 -3.0 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4528 -1.5 -1.7 conserved protein of unknown function compare
PP_1598 -1.5 -3.5 regulatory intramembrane protein RIP zinc protease compare
PP_1876 -1.5 -2.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1381 -1.5 -1.0 4-carboxymuconolactone decarboxylase compare
PP_1000 -1.5 -3.4 ornithine carbamoyltransferase, catabolic compare
PP_2873 -1.4 -3.1 conserved protein of unknown function, UPF0145 family compare
PP_1780 -1.4 -8.4 putative mannosyltransferase compare
PP_0435 -1.4 -5.2 Peptidase, M23/M37 family compare
PP_2306 -1.4 -1.6 conserved exported protein of unknown function compare
PP_4560 -1.4 -3.8 putative Ribonuclease BN compare
PP_1001 -1.4 -2.4 arginine deiminase compare
PP_2336 -1.4 -2.9 aconitate hydratase 1 compare
PP_5090 -1.4 -1.7 putative cell division protein compare
PP_1803 -1.4 -6.8 UDP-sugar epimerase compare
PP_1318 -1.4 -4.0 Cytochrome b compare
PP_4504 -1.3 -1.3 conserved exported protein of unknown function compare
PP_1719 -1.3 -6.3 Tail-specific protease prc compare
PP_2661 -1.3 -2.6 conserved protein of unknown function compare
PP_1076 -1.3 -3.8 aquaglyceroporin compare
PP_0164 -1.3 -3.7 conserved protein of unknown function compare
PP_1404 -1.3 -2.2 conserved protein of unknown function compare
PP_2898 -1.3 -2.0 conserved exported protein of unknown function compare
PP_5093 -1.3 -1.0 twitching motility protein compare
PP_1468 -1.3 -2.2 Tyrosine recombinase XerD compare
PP_1799 -1.3 -6.7 GDP-mannose 4,6-dehydratase compare
PP_2313 -1.2 -1.5 conserved membrane protein of unknown function compare
PP_2330 -1.2 -2.5 conserved protein of unknown function compare
PP_4120 -1.2 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_0719 -1.2 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5706 -1.2 -1.4 Sec translocation complex - SecG subunit compare
PP_4343 -1.2 -3.4 Flagellar biosynthesis protein FlhF compare
PP_1733 -1.2 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_4964 -1.2 -2.9 D-erythrose 4-phosphate dehydrogenase compare
PP_5229 -1.2 -3.2 conserved protein of unknown function compare
PP_3888 -1.2 -3.1 conserved protein of unknown function compare
PP_5230 -1.2 -3.5 Tyrosine recombinase XerC compare
PP_2550 -1.2 -1.5 putative transcriptional regulatory protein compare
PP_5310 -1.2 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_0735 -1.2 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_0048 -1.1 -1.0 conserved protein of unknown function compare
PP_2090 -1.1 -2.6 Uroporphyrinogen-III C-methyltransferase compare
PP_3380 -1.1 -2.2 2-ketogluconate utilization repressor compare
PP_2073 -1.1 -1.9 Acetyltransferase, GNAT family compare
PP_5572 -1.1 -2.5 protein of unknown function compare
PP_0306 -1.1 -1.6 conserved protein of unknown function compare
PP_2320 -1.1 -3.7 conserved exported protein of unknown function compare
PP_4121 -1.1 -3.2 NADH-quinone oxidoreductase subunit C/D compare
PP_1801 -1.1 -3.0 Glycosyl transferase WbpY compare
PP_3474 -1.1 -4.0 putative Curli fiber protein CsgE compare
PP_4223 -1.1 -1.2 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4880 -1.1 -5.9 exoribonuclease R compare
PP_0999 -1.1 -2.7 carbamate kinase compare
PP_2274 -1.1 -2.2 conserved protein of unknown function compare
PP_2631 -1.1 -1.0 putative cellulose biosynthesis, BcsF/YhjT compare
PP_4994 -1.1 -2.1 conserved protein of unknown function compare
PP_3519 -1.1 -0.9 putative Lipoprotein compare
PP_1008 -1.1 -1.5 RNA polymerase subunit sigma-24 compare
PP_4937 -1.1 -3.2 toluene tolerance protein compare
PP_4952 -1.1 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0653 -1.1 -0.9 conserved protein of unknown function compare
PP_2070 -1.1 -0.8 Transcriptional regulator, AraC family compare
PP_1319 -1.1 -2.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5240 -1.1 -1.5 Response regulator compare
PP_1493 -1.0 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2720 -1.0 -0.9 conserved protein of unknown function compare
PP_4204 -1.0 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4471 -1.0 -3.0 Magnesium transporter compare
PP_0901 -1.0 -2.0 DNA-binding response regulator compare
PP_4126 -1.0 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_4669 -1.0 -2.1 OmpA family protein compare
PP_2016 -1.0 -1.7 conserved protein of unknown function compare
PP_5022 -1.0 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PP_0902 -1.0 -3.9 integral membrane sensor signal transduction histidine kinase compare
PP_2168 -1.0 -4.9 Transaldolase compare
PP_5217 -1.0 -6.4 Polyphosphate kinase compare
PP_2118 -1.0 -2.0 conserved protein of unknown function compare
PP_4941 -1.0 -3.6 conserved exported protein of unknown function compare
PP_5084 -1.0 -6.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0339 -1.0 -2.2 Pyruvate dehydrogenase E1 component compare
PP_2499 -1.0 -0.9 conserved protein of unknown function compare
PP_0007 -0.9 -2.3 conserved hypothetical protein compare
PP_0598 -0.9 -6.1 paraquat-inducible protein A compare
PP_1178 -0.9 -1.4 conserved protein of unknown function compare
PP_4320 -0.9 -2.2 cytochrome c-type biogenesis protein compare
PP_2882 -0.9 -2.6 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_1366 -0.9 -0.9 Transcriptional regulator MvaT, P16 subunit compare
PP_2592 -0.9 -2.1 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5289 -0.9 -3.3 Acetylglutamate kinase compare
PP_0261 -0.9 -3.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_3539 -0.9 -1.7 putative Transcriptional regulator compare
PP_2526 -0.9 -1.2 conserved membrane protein of unknown function compare
PP_4131 -0.9 -3.0 NADH-quinone oxidoreductase subunit N compare
PP_3627 -0.9 -1.9 conserved protein of unknown function compare
PP_4271 -0.9 -0.6 conserved protein of unknown function compare
PP_5507 -0.9 -2.0 protein of unknown function compare
PP_5083 -0.9 -1.9 putative Type IV pili biogenesis protein PilM compare
PP_0725 -0.9 -2.6 conserved hypothetical TPR repeat protein compare
PP_1271 -0.9 -2.8 putative Multidrug efflux MFS transporter compare
PP_3773 -0.9 -1.7 conserved protein of unknown function compare
PP_1702 -0.9 -2.2 Recombination-associated protein RdgC compare
PP_2323 -0.9 -3.0 conserved protein of unknown function compare
PP_2217 -0.9 -1.5 enoyl-CoA hydratase compare
PP_4571 -0.9 -3.2 cysteine synthase A compare
PP_1382 -0.9 -3.8 putative porin-encoding gene compare
PP_5274 -0.9 -1.3 conserved protein of unknown function compare
PP_0607 -0.8 -1.4 putative Type IV pili biogenesis protein FimT compare
PP_3073 -0.8 -3.4 3-hydroxybutyrate dehydrogenase compare
PP_2318 -0.8 -2.4 acyl-CoA thioesterase I/protease I/lysophospholipase L1 compare
PP_2764 -0.8 -1.7 FMN reductase (NADPH) compare
PP_2681 -0.8 -1.0 coenzyme PQQ synthesis protein D compare
PP_0801 -0.8 -0.8 conserved exported protein of unknown function compare
PP_4263 -0.8 -1.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5279 -0.8 -1.7 conserved protein of unknown function compare
PP_1829 -0.8 -1.5 Hydrolase, alpha/beta fold family compare
PP_4261 -0.8 -2.5 cation-transporting P-type ATPase compare
PP_4212 -0.8 -2.0 pyoverdine biosynthesis related protein compare
PP_4250 -0.8 -3.9 cytochrome c oxidase subunit I, cbb3-type compare
PP_2950 -0.8 -1.5 conserved protein of unknown function compare
PP_4859 -0.8 -2.2 Transcriptional regulator, TetR family compare
PP_2647 -0.8 -3.9 Major facilitator family transporter compare
PP_5486 -0.8 -1.0 conserved protein of unknown function compare
PP_3473 -0.8 -2.9 curli secretion and assembly outer membrane associated component compare
PP_4681 -0.8 -1.4 conserved protein of unknown function compare
PP_2365 -0.8 -1.8 Transcriptional regulator, AraC family compare
PP_2319 -0.8 -2.6 conserved protein of unknown function compare
PP_5327 -0.8 -2.2 putative phosphate ABC transporter, permease subunit compare
PP_0869 -0.8 -2.5 osmoprotectant ABC transporter permease subunit compare
PP_5350 -0.8 -2.4 Transcriptional regulator, RpiR family compare
PP_3530 -0.8 -2.4 putative S-ureidoglycine aminohydrolase compare
PP_2619 -0.8 -2.3 FHA domain protein compare
PP_2334 -0.8 -3.1 2-methylisocitrate lyase compare


Specific Phenotypes

For 3 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas putida KT2440

For stress Polymyxin B sulfate across organisms