Experiment set38IT027 for Pseudomonas putida KT2440

Compare to:

R2A with Polymyxin B sulfate 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
PP_4265 -5.6 -3.8 DNA-binding transcriptional dual regulator compare
PP_4799 -5.3 -3.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4943 -4.8 -4.5 putative Glycosyl transferase compare
PP_0856 -4.5 -7.1 conserved lipoprotein of unknown function compare
PP_4724 -4.3 -2.9 Carbamoyl-phosphate synthase small chain compare
PP_4693 -4.1 -7.6 RNA polymerase-binding transcription factor DksA compare
PP_4999 -3.9 -2.7 dihydroorotase-like protein compare
PP_3821 -3.7 -9.7 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1232 -3.6 -10.2 conserved exported protein of unknown function compare
PP_4940 -3.2 -9.2 Putative glycosyltransferase compare
PP_0691 -3.1 -3.9 Glutamate 5-kinase compare
PP_2145 -2.9 -4.2 beta-N-acetylglucosaminidase compare
PP_2322 -2.8 -4.6 Major outer membrane lipoprotein compare
PP_4804 -2.7 -5.1 RlpA-like lipoprotein compare
PP_0127 -2.5 -5.5 Thiol:disulfide interchange protein compare
PP_4902 -2.4 -4.6 Oligoribonuclease compare
PP_4895 -2.4 -5.7 tRNA dimethylallyltransferase compare
PP_1654 -2.4 -3.8 cysteine synthase B compare
PP_1898 -2.4 -4.2 MotA/TolQ/ExbB proton channel family protein compare
PP_4593 -2.4 -2.2 conserved protein of unknown function compare
PP_1237 -2.3 -2.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4994 -2.3 -6.3 conserved protein of unknown function compare
PP_5095 -2.2 -2.5 pyrroline-5-carboxylate reductase compare
PP_4560 -2.2 -6.6 putative Ribonuclease BN compare
PP_4936 -2.1 -8.5 O-antigen polymerase compare
PP_4723 -2.1 -6.9 Carbamoyl-phosphate synthase large chain compare
PP_4938 -2.1 -9.0 putative Glycosyl transferase compare
PP_1733 -2.0 -4.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_2328 -2.0 -5.2 Phosphoadenosine phosphosulfate reductase compare
PP_1776 -1.9 -10.1 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_0855 -1.9 -2.3 conserved protein of unknown function compare
PP_0809 -1.8 -9.9 disulfide bond formation protein B compare
PP_1802 -1.8 -11.3 glycosyl transferase compare
PP_1779 -1.8 -6.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1002 -1.8 -6.8 arginine/ornithine antiporter compare
PP_1778 -1.8 -6.9 Lipopolysaccharide ABC export system, permease protein compare
PP_1217 -1.7 -5.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1799 -1.7 -9.4 GDP-mannose 4,6-dehydratase compare
PP_1801 -1.7 -6.7 Glycosyl transferase WbpY compare
PP_4126 -1.7 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_1804 -1.7 -6.6 Glycosyl transferase WbpL compare
PP_0406 -1.7 -2.5 Nucleotidyltransferase family protein compare
PP_1598 -1.7 -4.7 regulatory intramembrane protein RIP zinc protease compare
PP_1805 -1.6 -10.3 Polysaccharide biosynthesis protein compare
PP_1198 -1.6 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5230 -1.6 -5.9 Tyrosine recombinase XerC compare
PP_4004 -1.6 -5.6 DNA translocase FtsK compare
PP_1215 -1.5 -2.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1468 -1.5 -4.5 Tyrosine recombinase XerD compare
PP_1780 -1.5 -10.7 putative mannosyltransferase compare
PP_1803 -1.5 -7.5 UDP-sugar epimerase compare
PP_1800 -1.4 -5.8 Oxidoreductase Rmd compare
PP_1216 -1.4 -3.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5093 -1.4 -1.8 twitching motility protein compare
PP_1734 -1.4 -3.1 Probable septum site-determining protein MinC compare
PP_2337 -1.4 -2.0 aconitate isomerase compare
PP_3519 -1.3 -1.4 putative Lipoprotein compare
PP_0339 -1.3 -3.3 Pyruvate dehydrogenase E1 component compare
PP_4271 -1.3 -1.2 conserved protein of unknown function compare
PP_0957 -1.3 -1.9 D-arabinose 5-phosphate isomerase compare
PP_0001 -1.3 -1.2 probable chromosome-partitioning protein compare
PP_0938 -1.3 -6.9 conserved protein of unknown function compare
PP_2700 -1.3 -3.0 AhpC/TSA family protein compare
PP_2299 -1.2 -3.1 Trigger factor compare
PP_1224 -1.2 -4.2 periplasmic subunit of the TolQRA transport system compare
PP_2720 -1.2 -1.3 conserved protein of unknown function compare
PP_2320 -1.2 -7.1 conserved exported protein of unknown function compare
PP_0393 -1.2 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2331 -1.2 -4.3 conserved membrane protein of unknown function compare
PP_4848 -1.2 -2.6 Curved DNA-binding protein compare
PP_0999 -1.1 -4.1 carbamate kinase compare
PP_0401 -1.1 -3.6 Ribosomal RNA small subunit methyltransferase A compare
PP_2747 -1.1 -1.3 conserved protein of unknown function compare
PP_5652 -1.1 -1.7 conserved protein of unknown function, phage origin compare
PP_1325 -1.1 -5.4 putative lipoprotein compare
PP_5393 -1.1 -1.8 putative metal-binding chaperone compare
PP_1187 -1.1 -5.5 sensor protein compare
PP_5084 -1.1 -7.3 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_2192 -1.1 -3.3 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein compare
PP_0022 -1.1 -1.0 hypothetical protein compare
PP_2323 -1.1 -5.3 conserved protein of unknown function compare
PP_1000 -1.1 -3.7 ornithine carbamoyltransferase, catabolic compare
PP_4701 -1.1 -1.0 glucose-6-phosphate isomerase compare
PP_0719 -1.0 -1.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4592 -1.0 -7.0 putative metal dependent hydrolase conserved
PP_4094 -1.0 -1.9 conserved protein of unknown function compare
PP_2000 -1.0 -1.9 amidophosphoribosyl transferase compare
PP_2307 -1.0 -1.9 conserved protein of unknown function compare
PP_4785 -1.0 -5.8 conserved exported protein of unknown function compare
PP_5310 -1.0 -4.2 junction-specific ATP-dependent DNA helicase compare
PP_0998 -1.0 -4.0 conserved protein of unknown function compare
PP_1664 -1.0 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_2794 -1.0 -1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_4136 -1.0 -1.1 Transcriptional regulator, LuxR family compare
PP_5580 -1.0 -1.5 protein of unknown function compare
PP_1001 -1.0 -2.6 arginine deiminase compare
PP_1632 -1.0 -1.5 conserved protein of unknown function compare
PP_4880 -1.0 -6.2 exoribonuclease R compare
PP_4937 -1.0 -3.2 toluene tolerance protein compare
PP_2538 -1.0 -4.7 conserved exported protein of unknown function compare
PP_1097 -1.0 -1.3 Methionine--tRNA ligase compare
PP_4263 -1.0 -2.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2976 -1.0 -1.4 putative transposase compare
PP_1214 -0.9 -2.8 putative transcriptional regulatory protein compare
PP_5191 -0.9 -2.3 conserved exported protein of unknown function compare
PP_1691 -0.9 -2.1 conserved protein of unknown function compare
PP_0405 -0.9 -4.6 conserved protein of unknown function compare
PP_1783 -0.9 -1.6 dTDP-glucose pyrophosphorylase compare
PP_0435 -0.9 -3.6 Peptidase, M23/M37 family compare
PP_1562 -0.9 -1.6 putative Phage terminase, small subunit compare
PP_2324 -0.9 -3.4 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0164 -0.9 -3.8 conserved protein of unknown function compare
PP_2403 -0.9 -1.2 Chemotaxis protein CheY compare
PP_0888 -0.9 -1.6 Photosynthetic apparatus regulatory protein RegA compare
PP_2681 -0.9 -1.3 coenzyme PQQ synthesis protein D compare
PP_1317 -0.8 -2.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4262 -0.8 -1.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_0961 -0.8 -4.1 toluene tolerance protein compare
PP_3480 -0.8 -2.4 conserved protein of unknown function compare
PP_5217 -0.8 -5.7 Polyphosphate kinase compare
PP_5014 -0.8 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0678 -0.8 -4.7 conserved exported protein of unknown function compare
PP_2525 -0.8 -2.3 conserved protein of unknown function compare
PP_5090 -0.8 -1.9 putative cell division protein compare
PP_2054 -0.8 -2.7 putative DNA-binding transcriptional regulator compare
PP_2044 -0.8 -1.4 conserved inner membrane protein of unknown function compare
PP_0673 -0.8 -1.2 conserved protein of unknown function compare
PP_2319 -0.8 -2.6 conserved protein of unknown function compare
PP_0261 -0.8 -3.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0960 -0.8 -2.9 phospholipid ABC transporter binding protein compare
PP_4690 -0.8 -2.4 Rieske 2Fe-2S family protein compare
PP_3065 -0.8 -3.6 Pyocin R2_PP, tail formation compare
PP_2898 -0.8 -1.3 conserved exported protein of unknown function compare
PP_1301 -0.8 -4.4 quality control serine endoprotease DegS compare
PP_0902 -0.8 -3.4 integral membrane sensor signal transduction histidine kinase compare
PP_0123 -0.8 -4.9 DNA polymerase I, 5 compare
PP_4342 -0.8 -4.0 flagellar synthesis regulator, putative ATPase compare
PP_1318 -0.8 -2.7 Cytochrome b compare
PP_0040 -0.8 -2.3 hypothetical protein compare
PP_5311 -0.8 -3.9 putative signal transduction protein compare
PP_3105 -0.8 -1.2 conserved membrane protein of unknown function compare
PP_2118 -0.8 -1.1 conserved protein of unknown function compare
PP_5253 -0.8 -2.1 Arylesterase compare
PP_2835 -0.8 -1.6 putative oxidoreductase compare
PP_0653 -0.8 -1.1 conserved protein of unknown function compare
PP_4227 -0.8 -1.5 conserved protein of unknown function compare
PP_1326 -0.8 -1.9 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_0901 -0.8 -3.7 DNA-binding response regulator compare
PP_t12 -0.8 -0.9 tRNA-Thr compare
PP_5350 -0.8 -2.2 Transcriptional regulator, RpiR family compare
PP_1207 -0.8 -2.4 conserved protein of unknown function compare
PP_3365 -0.8 -0.9 Acetolactate synthase compare
PP_1344 -0.7 -1.3 conserved protein of unknown function compare
PP_5556 -0.7 -3.0 putative bacteriophage lysis protein compare
PP_1079 -0.7 -2.6 Ornithine carbamoyltransferase compare
PP_4683 -0.7 -4.7 transglycosylase/transpeptidase compare
PP_1186 -0.7 -1.2 two component system DNA-binding transcriptional dual regulator compare
PP_2302 -0.7 -2.3 DNA-binding, ATP-dependent protease compare
PP_2121 -0.7 -1.2 putative Lipoprotein compare
PP_0599 -0.7 -5.8 paraquat-inducible protein B compare
PP_4941 -0.7 -4.1 conserved exported protein of unknown function compare
PP_3384 -0.7 -2.1 gluconate 2-dehydrogenase gamma subunit compare
PP_1690 -0.7 -2.8 conserved protein of unknown function compare
PP_0293 -0.7 -1.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5146 -0.7 -3.9 RNA pyrophosphohydrolase compare
PP_4204 -0.7 -2.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3100 -0.7 -2.0 conserved protein of unknown function compare
PP_5058 -0.7 -2.6 Carboxy-terminal-processing protease compare
PP_2672 -0.7 -2.4 Transcriptional activator protein ExaE compare
PP_5051 -0.7 -2.2 conserved protein of unknown function compare
PP_5483 -0.7 -1.4 conserved protein of unknown function compare
PP_1454 -0.7 -2.2 conserved protein of unknown function compare
PP_2883 -0.7 -1.1 conserved protein of unknown function compare
PP_0135 -0.7 -3.6 conserved exported protein of unknown function compare
PP_4138 -0.7 -2.8 Chromate reductase compare
PP_2217 -0.7 -1.8 enoyl-CoA hydratase compare
PP_0598 -0.7 -4.7 paraquat-inducible protein A compare
PP_4264 -0.7 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2306 -0.7 -1.4 conserved exported protein of unknown function compare
PP_1656 -0.7 -1.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_5745 -0.7 -3.7 paraquat-inducible protein A compare
PP_2816 -0.7 -1.9 putative Transcriptional regulator NfxB compare
PP_1999 -0.7 -1.2 membrane protein required for colicin V production compare
PP_1829 -0.7 -1.8 Hydrolase, alpha/beta fold family compare
PP_5331 -0.7 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_5328 -0.7 -1.2 putative phosphate transport system permease protein compare
PP_3204 -0.7 -2.1 conserved protein of unknown function compare
PP_0887 -0.7 -3.7 Sensor histidine kinase compare
PP_4253 -0.7 -1.3 cytochrome c oxidase subunit, cbb3-type compare
PP_3715 -0.7 -2.8 Muconate cycloisomerase 1 compare
PP_1554 -0.7 -1.9 conserved protein of unknown function compare
PP_5491 -0.7 -1.4 conserved protein of unknown function with SEC-C motif domain compare
PP_4847 -0.7 -1.7 chaperone modulatory of CbpA co-chaperone protein compare
PP_0556 -0.7 -2.0 Acetoin catabolism protein compare
PP_3767 -0.7 -2.4 conserved protein of unknown function compare
PP_5582 -0.7 -0.7 conserved protein of unknown function compare
PP_1570 -0.6 -3.0 Head-tail adaptor compare
PP_4914 -0.6 -2.4 putative phytase-like protein compare
PP_2327 -0.6 -2.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1719 -0.6 -3.6 Tail-specific protease prc compare


Specific Phenotypes

For 3 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas putida KT2440

For stress Polymyxin B sulfate across organisms