Experiment set38IT025 for Pseudomonas putida KT2440

Compare to:

R2A with Polymyxin B sulfate 0.001 mg/ml

200 most important genes:

  gene name fitness t score description  
PP_0691 -6.1 -4.2 Glutamate 5-kinase compare
PP_0856 -5.6 -7.6 conserved lipoprotein of unknown function compare
PP_4799 -5.4 -3.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4265 -4.6 -5.4 DNA-binding transcriptional dual regulator compare
PP_4999 -4.0 -2.7 dihydroorotase-like protein compare
PP_4693 -3.6 -6.7 RNA polymerase-binding transcription factor DksA compare
PP_4723 -3.2 -5.7 Carbamoyl-phosphate synthase large chain compare
PP_4724 -3.2 -4.8 Carbamoyl-phosphate synthase small chain compare
PP_4804 -3.2 -4.3 RlpA-like lipoprotein compare
PP_4902 -2.9 -4.7 Oligoribonuclease compare
PP_3821 -2.9 -8.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1232 -2.7 -6.1 conserved exported protein of unknown function compare
PP_2337 -2.7 -3.7 aconitate isomerase compare
PP_4940 -2.6 -8.7 Putative glycosyltransferase compare
PP_4943 -2.4 -2.2 putative Glycosyl transferase compare
PP_2322 -2.4 -5.7 Major outer membrane lipoprotein compare
PP_2336 -2.2 -5.1 aconitate hydratase 1 compare
PP_4136 -2.1 -2.1 Transcriptional regulator, LuxR family compare
PP_0393 -2.1 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0833 -2.0 -3.2 queuine tRNA-ribosyltransferase compare
PP_2000 -2.0 -2.4 amidophosphoribosyl transferase compare
PP_1216 -1.9 -3.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4938 -1.9 -7.8 putative Glycosyl transferase compare
PP_2145 -1.9 -2.6 beta-N-acetylglucosaminidase compare
PP_1783 -1.8 -2.8 dTDP-glucose pyrophosphorylase compare
PP_2320 -1.8 -8.8 conserved exported protein of unknown function compare
PP_1801 -1.8 -7.3 Glycosyl transferase WbpY compare
PP_1778 -1.8 -5.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0855 -1.7 -2.1 conserved protein of unknown function compare
PP_1799 -1.7 -7.8 GDP-mannose 4,6-dehydratase compare
PP_0127 -1.7 -5.5 Thiol:disulfide interchange protein compare
PP_2309 -1.7 -1.5 conserved protein of unknown function compare
PP_1734 -1.7 -5.3 Probable septum site-determining protein MinC compare
PP_0809 -1.7 -7.6 disulfide bond formation protein B compare
PP_1733 -1.6 -3.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_4994 -1.6 -4.1 conserved protein of unknown function compare
PP_3392 -1.6 -1.7 conserved protein of unknown function compare
PP_4936 -1.6 -6.2 O-antigen polymerase compare
PP_4895 -1.6 -3.3 tRNA dimethylallyltransferase compare
PP_1804 -1.5 -6.7 Glycosyl transferase WbpL compare
PP_1002 -1.5 -5.6 arginine/ornithine antiporter compare
PP_4004 -1.5 -6.1 DNA translocase FtsK compare
PP_1802 -1.5 -9.1 glycosyl transferase compare
PP_1805 -1.5 -9.7 Polysaccharide biosynthesis protein compare
PP_1664 -1.5 -3.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1776 -1.5 -9.4 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_1800 -1.4 -7.6 Oxidoreductase Rmd compare
PP_4560 -1.4 -3.7 putative Ribonuclease BN compare
PP_1224 -1.4 -3.5 periplasmic subunit of the TolQRA transport system compare
PP_1780 -1.4 -10.0 putative mannosyltransferase compare
PP_1198 -1.4 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1553 -1.4 -1.6 conserved protein of unknown function compare
PP_0293 -1.4 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1898 -1.4 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5090 -1.4 -2.5 putative cell division protein compare
PP_1779 -1.3 -5.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1654 -1.3 -2.2 cysteine synthase B compare
PP_t10 -1.3 -2.2 tRNA-Pro compare
PP_1293 -1.3 -1.9 molybdopterin synthase small subunit compare
PP_4964 -1.3 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_1217 -1.3 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2402 -1.3 -1.4 putative Sensor histidine kinase compare
PP_0406 -1.3 -2.7 Nucleotidyltransferase family protein compare
PP_2217 -1.2 -2.0 enoyl-CoA hydratase compare
PP_2302 -1.2 -3.5 DNA-binding, ATP-dependent protease compare
PP_1325 -1.2 -5.3 putative lipoprotein compare
PP_2328 -1.2 -3.0 Phosphoadenosine phosphosulfate reductase compare
PP_3926 -1.2 -0.8 short-chain dehydrogenase compare
PP_0435 -1.2 -4.4 Peptidase, M23/M37 family compare
PP_2737 -1.2 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4204 -1.2 -2.6 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2203 -1.2 -1.3 conserved protein of unknown function compare
PP_4342 -1.2 -2.7 flagellar synthesis regulator, putative ATPase compare
PP_1468 -1.2 -3.5 Tyrosine recombinase XerD compare
PP_1186 -1.1 -2.1 two component system DNA-binding transcriptional dual regulator compare
PP_5328 -1.1 -1.7 putative phosphate transport system permease protein compare
PP_0405 -1.1 -5.6 conserved protein of unknown function compare
PP_1001 -1.1 -3.8 arginine deiminase compare
PP_1237 -1.1 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5253 -1.1 -2.4 Arylesterase compare
PP_1803 -1.1 -6.0 UDP-sugar epimerase compare
PP_0962 -1.1 -2.0 toluene-tolerance protein compare
PP_2299 -1.1 -2.5 Trigger factor compare
PP_1215 -1.1 -1.5 Crossover junction endodeoxyribonuclease RuvC compare
PP_1568 -1.0 -1.2 conserved protein of unknown function compare
PP_4700 -1.0 -2.5 pantothenate synthetase compare
PP_5310 -1.0 -5.0 junction-specific ATP-dependent DNA helicase compare
PP_3378 -1.0 -0.8 putative 2-ketogluconokinase compare
PP_1318 -1.0 -3.8 Cytochrome b compare
PP_0846 -1.0 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_4880 -1.0 -5.7 exoribonuclease R compare
PP_2442 -1.0 -1.9 conserved protein of unknown function, DUF480 family compare
PP_5350 -1.0 -2.7 Transcriptional regulator, RpiR family compare
PP_4874 -0.9 -0.8 50S ribosomal protein L9 compare
PP_3532 -0.9 -1.4 Transcriptional regulator, AsnC family compare
PP_1656 -0.9 -2.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_1269 -0.9 -1.0 Universal stress protein family compare
PP_1598 -0.9 -2.4 regulatory intramembrane protein RIP zinc protease compare
PP_0598 -0.9 -5.9 paraquat-inducible protein A compare
PP_3850 -0.9 -3.3 conserved protein of unknown function compare
PP_5706 -0.9 -1.8 Sec translocation complex - SecG subunit compare
PP_5217 -0.9 -5.2 Polyphosphate kinase compare
PP_0999 -0.9 -2.0 carbamate kinase compare
PP_4785 -0.9 -4.4 conserved exported protein of unknown function compare
PP_4942 -0.9 -1.2 conserved protein of unknown function compare
PP_4808 -0.9 -1.9 23S rRNA m3psi1915 methyltransferase compare
PP_2323 -0.9 -3.5 conserved protein of unknown function compare
PP_3891 -0.9 -1.5 conserved protein of unknown function compare
PP_5489 -0.9 -2.5 conserved protein of unknown function compare
PP_5500 -0.9 -2.5 protein of unknown function compare
PP_3320 -0.9 -2.4 conserved protein of unknown function compare
PP_5084 -0.9 -5.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5533 -0.9 -1.1 conserved protein of unknown function compare
PP_4504 -0.8 -1.7 conserved exported protein of unknown function compare
PP_1719 -0.8 -3.6 Tail-specific protease prc compare
PP_0901 -0.8 -4.0 DNA-binding response regulator compare
PP_4683 -0.8 -6.0 transglycosylase/transpeptidase compare
PP_0599 -0.8 -6.1 paraquat-inducible protein B compare
PP_3211 -0.8 -1.9 ABC transporter, ATP-binding protein compare
PP_4669 -0.8 -1.5 OmpA family protein compare
PP_3449 -0.8 -1.3 conserved exported protein of unknown function compare
PP_1562 -0.8 -1.6 putative Phage terminase, small subunit compare
PP_0938 -0.8 -4.4 conserved protein of unknown function compare
PP_3064 -0.8 -1.7 Phage tail protein compare
PP_0678 -0.8 -4.2 conserved exported protein of unknown function compare
PP_5745 -0.8 -3.7 paraquat-inducible protein A compare
PP_1864 -0.8 -1.1 conserved protein of unknown function compare
PP_0292 -0.8 -1.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2749 -0.8 -2.7 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1764 -0.8 -1.7 Phosphoglycolate phosphatase 2 compare
PP_3105 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_5569 -0.8 -2.9 protein of unknown function of phage origin compare
PP_4262 -0.8 -0.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_5621 -0.8 -1.0 protein of unknown function compare
PP_5502 -0.8 -2.4 ribosome modulation factor compare
PP_4642 -0.8 -0.9 Cyclic diguanosine monophosphate-binding protein compare
PP_4261 -0.8 -2.2 cation-transporting P-type ATPase compare
PP_2168 -0.8 -4.3 Transaldolase compare
PP_4471 -0.8 -2.6 Magnesium transporter compare
PP_0434 -0.8 -2.1 Anhydro-N-acetylmuramic acid kinase compare
PP_0401 -0.8 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_2330 -0.8 -1.4 conserved protein of unknown function compare
PP_4561 -0.8 -0.8 stress response protein compare
PP_5546 -0.8 -1.1 conserved protein of unknown function compare
PP_1729 -0.8 -1.6 conserved protein of unknown function compare
PP_4835 -0.8 -1.4 conserved exported protein of unknown function compare
PP_1605 -0.8 -1.7 Ribonuclease HII compare
PP_0998 -0.8 -3.5 conserved protein of unknown function compare
PP_3065 -0.8 -3.6 Pyocin R2_PP, tail formation compare
PP_4251 -0.8 -1.9 cytochrome c oxidase subunit, cbb3-type compare
PP_0902 -0.8 -3.5 integral membrane sensor signal transduction histidine kinase compare
PP_5022 -0.7 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_3332 -0.7 -2.0 putative cytochrome c-type protein compare
PP_2324 -0.7 -3.0 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_2087 -0.7 -1.6 CmpX protein compare
PP_1713 -0.7 -1.6 Transcriptional regulator PcaQ compare
PP_1777 -0.7 -4.7 phosphomannomutase compare
PP_1045 -0.7 -1.3 Type II secretion pathway protein XcpP compare
PP_3241 -0.7 -0.9 conserved exported protein of unknown function compare
PP_1623 -0.7 -4.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_2794 -0.7 -1.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_5162 -0.7 -2.3 conserved exported protein of unknown function compare
PP_4941 -0.7 -3.4 conserved exported protein of unknown function compare
PP_2835 -0.7 -2.1 putative oxidoreductase compare
PP_5146 -0.7 -3.5 RNA pyrophosphohydrolase compare
PP_2820 -0.7 -1.2 HTH-type transcriptional regulator nfxB compare
PP_3627 -0.7 -2.6 conserved protein of unknown function compare
PP_1187 -0.7 -4.8 sensor protein compare
PP_5625 -0.7 -2.4 conserved protein of unknown function compare
PP_0960 -0.7 -2.8 phospholipid ABC transporter binding protein compare
PP_3474 -0.7 -2.7 putative Curli fiber protein CsgE compare
PP_1556 -0.7 -1.4 conserved protein of unknown function compare
PP_5552 -0.7 -1.0 conserved protein of unknown function compare
PP_1427 -0.7 -4.1 RNA polymerase sigma E factor compare
PP_2341 -0.7 -1.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_1548 -0.7 -2.0 conserved protein of unknown function compare
PP_5580 -0.7 -1.1 protein of unknown function compare
PP_1131 -0.7 -2.4 outer membrane lipoprotein compare
PP_2032 -0.7 -3.2 putative ATPase compare
PP_4356 -0.7 -2.0 Flagellar protein FliO compare
PP_4850 -0.7 -3.8 conserved membrane protein of unknown function compare
PP_4005 -0.7 -2.6 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_4094 -0.7 -0.9 conserved protein of unknown function compare
PP_2030 -0.7 -2.0 conserved protein of unknown function compare
PP_2124 -0.7 -2.2 putative Glycosyl transferase compare
PP_1702 -0.6 -1.9 Recombination-associated protein RdgC compare
PP_0989 -0.6 -1.7 glycine cleavage system H protein 1 compare
PP_2828 -0.6 -1.9 conserved protein of unknown function compare
PP_4726 -0.6 -1.6 Chaperone protein DnaJ compare
PP_2371 -0.6 -2.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1054 -0.6 -1.5 Type II secretion pathway protein XcpZ compare
PP_1214 -0.6 -1.8 putative transcriptional regulatory protein compare
PP_1439 -0.6 -0.8 conserved exported protein of unknown function compare
PP_4133 -0.6 -1.3 Transcriptional regulator-related protein compare
PP_4952 -0.6 -0.7 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4591 -0.6 -2.3 Ribonuclease D compare
PP_0274 -0.6 -1.2 putative transcriptional regulator containing HTH domain compare
PP_3792 -0.6 -1.2 conserved protein of unknown function compare
PP_4482 -0.6 -1.7 Transcriptional regulator, AraC family compare
PP_3519 -0.6 -0.8 putative Lipoprotein compare


Specific Phenotypes

For 2 genes in this experiment

For stress Polymyxin B sulfate in Pseudomonas putida KT2440

For stress Polymyxin B sulfate across organisms