Experiment set38IT018 for Pseudomonas putida KT2440

Compare to:

R2A control with 0.2X Vogels

200 most important genes:

  gene name fitness t score description  
PP_0691 -5.7 -4.0 Glutamate 5-kinase compare
PP_4265 -5.4 -3.7 DNA-binding transcriptional dual regulator compare
PP_5095 -5.2 -3.2 pyrroline-5-carboxylate reductase compare
PP_4799 -5.0 -3.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0856 -4.7 -8.0 conserved lipoprotein of unknown function compare
PP_4700 -4.4 -3.0 pantothenate synthetase compare
PP_0393 -4.0 -4.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4724 -4.0 -2.8 Carbamoyl-phosphate synthase small chain compare
PP_5748 -3.9 -1.6 cytochrome c heme lyase subunit compare
PP_4999 -3.6 -2.4 dihydroorotase-like protein compare
PP_4693 -3.1 -6.1 RNA polymerase-binding transcription factor DksA compare
PP_4964 -3.0 -5.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5328 -3.0 -3.2 putative phosphate transport system permease protein compare
PP_1568 -3.0 -1.9 conserved protein of unknown function compare
PP_4723 -2.9 -4.8 Carbamoyl-phosphate synthase large chain compare
PP_3999 -2.6 -7.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4804 -2.6 -3.6 RlpA-like lipoprotein compare
PP_1664 -2.6 -4.7 phosphoribosylglycinamide formyltransferase 1 compare
PP_2371 -2.6 -3.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1654 -2.5 -3.2 cysteine synthase B compare
PP_1999 -2.5 -1.6 membrane protein required for colicin V production compare
PP_0833 -2.4 -2.7 queuine tRNA-ribosyltransferase compare
PP_2328 -2.3 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_4120 -2.0 -3.1 NADH-quinone oxidoreductase subunit B compare
PP_5216 -1.8 -2.4 exopolyphosphatase compare
PP_4126 -1.7 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_4008 -1.7 -4.1 ATP-dependent serine protease compare
PP_0719 -1.7 -1.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4004 -1.7 -3.3 DNA translocase FtsK compare
PP_4268 -1.7 -1.8 nucleoid-associated broad specificity regulator compare
PP_2336 -1.7 -2.9 aconitate hydratase 1 compare
PP_2322 -1.6 -4.6 Major outer membrane lipoprotein compare
PP_1734 -1.6 -4.0 Probable septum site-determining protein MinC compare
PP_0401 -1.6 -3.0 Ribosomal RNA small subunit methyltransferase A compare
PP_2309 -1.6 -1.4 conserved protein of unknown function compare
PP_1002 -1.5 -3.9 arginine/ornithine antiporter compare
PP_t12 -1.5 -1.2 tRNA-Thr compare
PP_0874 -1.5 -2.5 conserved protein of unknown function compare
PP_1001 -1.5 -2.8 arginine deiminase compare
PP_3541 -1.5 -1.9 Transporter, MgtC family compare
PP_4902 -1.4 -3.0 Oligoribonuclease compare
PP_0339 -1.4 -2.9 Pyruvate dehydrogenase E1 component compare
PP_4560 -1.4 -3.4 putative Ribonuclease BN compare
PP_1224 -1.4 -5.2 periplasmic subunit of the TolQRA transport system compare
PP_4917 -1.4 -3.7 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4909 -1.3 -3.8 phosphoserine phosphatase compare
PP_5008 -1.3 -1.2 Poly granule-associated protein compare
PP_0888 -1.3 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4204 -1.3 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0846 -1.3 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_5456 -1.3 -1.6 conserved protein of unknown function compare
PP_2299 -1.3 -2.7 Trigger factor compare
PP_0293 -1.3 -2.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5162 -1.3 -2.7 conserved exported protein of unknown function compare
PP_0292 -1.3 -1.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0235 -1.2 -3.0 Peroxidase compare
PP_4262 -1.2 -2.1 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2337 -1.2 -1.8 aconitate isomerase compare
PP_4129 -1.2 -2.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1994 -1.2 -1.7 tRNA pseudouridine (38-40)synthase compare
PP_5274 -1.2 -1.2 conserved protein of unknown function compare
PP_4738 -1.2 -1.9 conserved exported protein of unknown function compare
PP_4471 -1.2 -2.7 Magnesium transporter compare
PP_1216 -1.2 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1729 -1.2 -1.1 conserved protein of unknown function compare
PP_4124 -1.1 -2.9 NADH-quinone oxidoreductase subunit G compare
PP_5253 -1.1 -1.5 Arylesterase compare
PP_4130 -1.1 -2.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3384 -1.1 -3.0 gluconate 2-dehydrogenase gamma subunit compare
PP_4874 -1.1 -1.0 50S ribosomal protein L9 compare
PP_1187 -1.1 -4.8 sensor protein compare
PP_0184 -1.1 -3.3 Argininosuccinate lyase compare
PP_3821 -1.1 -3.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3770 -1.1 -3.5 conserved protein of unknown function compare
PP_5015 -1.1 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2378 -1.1 -1.5 Fe/S biogenesis protein NfuA compare
PP_1198 -1.1 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2640 -1.1 -2.6 Acetyltransferase, GNAT family compare
PP_0760 -1.0 -2.5 conserved membrane protein of unknown function compare
PP_4785 -1.0 -4.6 conserved exported protein of unknown function compare
PP_4546 -1.0 -2.3 ATP-dependent helicase HrpA compare
PP_0164 -1.0 -2.9 conserved protein of unknown function compare
PP_0999 -1.0 -2.6 carbamate kinase compare
PP_5393 -1.0 -0.9 putative metal-binding chaperone compare
PP_4121 -1.0 -2.7 NADH-quinone oxidoreductase subunit C/D compare
PP_2002 -1.0 -2.4 putative enzyme compare
PP_2341 -1.0 -1.1 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2550 -1.0 -1.8 putative transcriptional regulatory protein compare
PP_0998 -1.0 -3.1 conserved protein of unknown function compare
PP_2747 -1.0 -1.3 conserved protein of unknown function compare
PP_5667 -1.0 -2.2 putative microcin B17-like-processing protein, McbC family compare
PP_5329 -1.0 -1.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4362 -1.0 -1.8 conserved protein of unknown function compare
PP_1317 -1.0 -2.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1269 -1.0 -0.9 Universal stress protein family compare
PP_4482 -1.0 -2.1 Transcriptional regulator, AraC family compare
PP_3346 -1.0 -2.2 Nickel transporter ATP-binding protein compare
PP_1366 -1.0 -1.1 Transcriptional regulator MvaT, P16 subunit compare
PP_1232 -0.9 -4.1 conserved exported protein of unknown function compare
PP_1147 -0.9 -3.1 conserved protein of unknown function compare
PP_0566 -0.9 -0.9 translation-related factor compare
PP_5093 -0.9 -1.2 twitching motility protein compare
PP_4808 -0.9 -1.9 23S rRNA m3psi1915 methyltransferase compare
PP_2928 -0.9 -3.5 Saccharopine dehydrogenase compare
PP_5310 -0.9 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_1319 -0.9 -2.3 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_4271 -0.9 -0.8 conserved protein of unknown function compare
PP_0832 -0.9 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0319 -0.9 -1.4 conserved protein of unknown function compare
PP_1000 -0.9 -2.3 ornithine carbamoyltransferase, catabolic compare
PP_2540 -0.9 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_1528 -0.9 -1.1 conserved protein of unknown function compare
PP_3762 -0.9 -3.3 Response regulator compare
PP_5428 -0.9 -2.2 conserved exported protein of unknown function compare
PP_1268 -0.9 -2.5 putative HtrA suppressor protein sohA compare
PP_3773 -0.9 -1.0 conserved protein of unknown function compare
PP_4139 -0.9 -2.9 conserved protein of unknown function compare
PP_4556 -0.8 -1.3 conserved protein of unknown function compare
PP_1480 -0.8 -3.0 conserved protein of unknown function compare
PP_2442 -0.8 -1.7 conserved protein of unknown function, DUF480 family compare
PP_5628 -0.8 -1.1 conserved protein of unknown function compare
PP_4136 -0.8 -0.9 Transcriptional regulator, LuxR family compare
PP_1733 -0.8 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_5533 -0.8 -1.0 conserved protein of unknown function compare
PP_2857 -0.8 -1.5 conserved exported protein of unknown function compare
PP_2472 -0.8 -1.9 putative transcriptional regulator, MerR family compare
PP_0513 -0.8 -1.9 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4504 -0.8 -1.3 conserved exported protein of unknown function compare
PP_3411 -0.8 -1.1 conserved protein of unknown function compare
PP_1987 -0.8 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_2796 -0.8 -1.9 conserved protein of unknown function compare
PP_0065 -0.8 -2.2 NAD-binding component of TrK potassium transporter compare
PP_2433 -0.8 -1.3 conserved protein of unknown function compare
PP_0048 -0.8 -1.0 conserved protein of unknown function compare
PP_5139 -0.8 -2.9 cadmium translocating P-type ATPase compare
PP_0905 -0.8 -0.9 conserved exported protein of unknown function compare
PP_1833 -0.8 -2.5 conserved protein of unknown function compare
PP_1328 -0.8 -1.1 Protein MraZ compare
PP_5289 -0.8 -1.7 Acetylglutamate kinase compare
PP_4058 -0.8 -4.3 1,4-alpha-glucan branching enzyme compare
PP_2575 -0.8 -1.3 conserved exported protein of unknown function compare
PP_1439 -0.8 -1.2 conserved exported protein of unknown function compare
PP_3757 -0.8 -1.6 Chemotaxis protein CheY compare
PP_5038 -0.8 -2.1 conserved lipoprotein of unknown function compare
PP_4571 -0.8 -3.2 cysteine synthase A compare
PP_1076 -0.8 -2.3 aquaglyceroporin compare
PP_2535 -0.8 -2.3 putative inner membrane transport protein compare
PP_4993 -0.8 -2.2 Glutathione synthetase compare
PP_4285 -0.8 -2.2 5-hydroxyisourate hydrolase compare
PP_5717 -0.8 -1.2 conserved protein of unknown function compare
PP_4131 -0.8 -2.4 NADH-quinone oxidoreductase subunit N compare
PP_2122 -0.8 -2.0 molybdenum cofactor biosynthesis protein B compare
PP_3036 -0.8 -1.7 conserved protein of unknown function compare
PP_5014 -0.8 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4925 -0.8 -1.8 conserved protein of unknown function compare
PP_3924 -0.8 -1.4 conserved protein of unknown function compare
PP_1697 -0.8 -1.8 transcriptional regulator, GntR family compare
PP_2226 -0.8 -2.0 putative K(+)/H(+) antiporter subunit F compare
PP_5028 -0.8 -2.1 proline iminopeptidase compare
PP_3117 -0.7 -1.8 putative protein involved in error-prone processing of DNA lesions compare
PP_3447 -0.7 -0.8 conserved membrane protein of unknown function compare
PP_1390 -0.7 -1.4 conserved exported protein of unknown function compare
PP_5638 -0.7 -2.1 conserved protein of unknown function compare
PP_4690 -0.7 -1.7 Rieske 2Fe-2S family protein compare
PP_2908 -0.7 -2.6 DNA-binding transcriptional repressor compare
PP_3627 -0.7 -2.8 conserved protein of unknown function compare
PP_5580 -0.7 -1.3 protein of unknown function compare
PP_3474 -0.7 -2.8 putative Curli fiber protein CsgE compare
PP_1468 -0.7 -2.5 Tyrosine recombinase XerD compare
PP_3449 -0.7 -0.7 conserved exported protein of unknown function compare
PP_3051 -0.7 -1.4 Pyocin R2_PP, tail spike protein compare
PP_0209 -0.7 -1.9 ATP-binding taurine transporter subunit compare
PP_3362 -0.7 -1.9 Transcriptional regulator, AsnC family compare
PP_2302 -0.7 -2.3 DNA-binding, ATP-dependent protease compare
PP_4880 -0.7 -3.6 exoribonuclease R compare
PP_4253 -0.7 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_1764 -0.7 -1.5 Phosphoglycolate phosphatase 2 compare
PP_2370 -0.7 -1.0 conserved protein of unknown function compare
PP_1979 -0.7 -1.2 putative Hydrolase compare
PP_2752 -0.7 -2.1 conserved exported protein of unknown function compare
PP_4499 -0.7 -2.3 putative maturation enzyme compare
PP_0195 -0.7 -1.6 conserved protein of unknown function compare
PP_2972 -0.7 -0.8 conserved protein of unknown function compare
PP_2000 -0.7 -1.3 amidophosphoribosyl transferase compare
PP_0972 -0.7 -1.5 UPF0213 protein PP_0972 compare
PP_2144 -0.7 -1.4 Transcriptional regulator, TetR family compare
PP_4895 -0.7 -1.4 tRNA dimethylallyltransferase compare
PP_4273 -0.7 -1.1 Transcriptional regulator, MerR family compare
PP_5248 -0.7 -1.2 putative hydrolase compare
PP_1598 -0.7 -2.6 regulatory intramembrane protein RIP zinc protease compare
PP_2145 -0.7 -1.5 beta-N-acetylglucosaminidase compare
PP_5714 -0.7 -1.9 conserved protein of unknown function compare
PP_4875 -0.7 -1.7 conserved membrane protein of unknown function compare
PP_1038 -0.7 -1.3 conserved protein of unknown function compare
PP_2929 -0.7 -3.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5422 -0.7 -1.2 hypothetical protein compare
PP_1326 -0.7 -2.3 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2958 -0.7 -1.1 Glutaredoxin compare
PP_3903 -0.7 -0.9 conserved protein of unknown function compare
PP_1318 -0.7 -2.5 Cytochrome b compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in r2a control with 0.2x vogels experiments

For r2a control with 0.2x vogels Vogels_fungal_media across organisms